ARID1B.md
... ...
@@ -15,7 +15,7 @@ timeline
15 15
16 16
|Entity|Tier|Description |
17 17
|:------:|:----:|-----------------------------------------|
18
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
18
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
19 19
|![MCL](images/icons/MCL_tier2.png) |2 |relevance in MCL not firmly established |
20 20
21 21
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
CBLB.md
... ...
@@ -16,7 +16,8 @@ timeline
16 16
17 17
|Entity|Tier|Description |
18 18
|:------:|:----:|-----------------------------------------|
19
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
19
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
20
+
20 21
21 22
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
22 23
GNAS.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
MCL1.md
... ...
@@ -61,6 +61,61 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M
61 61
## MCL1 Expression
62 62
![](images/gene_expression/MCL1_by_pathology.svg)
63 63
64
+## All Mutations
65
+
66
+[Reddy_2074T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2074T.html)
67
+[Reddy_2114T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2114T.html)
68
+[Reddy_2124T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2124T.html)
69
+[Reddy_2148T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2148T.html)
70
+[Reddy_2150T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2150T.html)
71
+[Reddy_2153T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2153T.html)
72
+[Reddy_2156T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2156T.html)
73
+[Reddy_2215T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2215T.html)
74
+[Reddy_2233T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2233T.html)
75
+[Reddy_2476T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2476T.html)
76
+[Reddy_2478T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2478T.html)
77
+[Reddy_2482T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2482T.html)
78
+[Reddy_2525T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2525T.html)
79
+[Reddy_2540T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2540T.html)
80
+[Reddy_2542T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2542T.html)
81
+[Reddy_2554T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2554T.html)
82
+[Reddy_2649T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2649T.html)
83
+[Reddy_2706T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2706T.html)
84
+[Reddy_2713T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2713T.html)
85
+[Reddy_2727T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2727T.html)
86
+[Reddy_2819T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2819T.html)
87
+[Reddy_2832T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2832T.html)
88
+[Reddy_2874T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2874T.html)
89
+[Reddy_2948T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2948T.html)
90
+[Reddy_2952T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2952T.html)
91
+[Reddy_3385T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3385T.html)
92
+[Reddy_3454T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3454T.html)
93
+[Reddy_3468T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3468T.html)
94
+[Reddy_3471T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3471T.html)
95
+[Reddy_3476T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3476T.html)
96
+[Reddy_3527T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3527T.html)
97
+[Reddy_3547T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3547T.html)
98
+[Reddy_3593T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3593T.html)
99
+[Reddy_3602T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3602T.html)
100
+[Reddy_3622T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3622T.html)
101
+[Reddy_3664T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3664T.html)
102
+[Reddy_3667T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3667T.html)
103
+[Reddy_3766T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3766T.html)
104
+[Reddy_3777T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3777T.html)
105
+[Reddy_3782T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3782T.html)
106
+[Reddy_3811T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3811T.html)
107
+[Reddy_3817T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3817T.html)
108
+[Reddy_3825T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3825T.html)
109
+[Reddy_3829T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3829T.html)
110
+[Reddy_3837T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3837T.html)
111
+[Reddy_3927T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3927T.html)
112
+[Reddy_3952T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3952T.html)
113
+[Reddy_3965T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3965T.html)
114
+[Reddy_3966T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3966T.html)
115
+[Reddy_3984T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3984T.html)
116
+[Reddy_689T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_689T.html)
117
+[Reddy_830T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_830T.html)
118
+
64 119
65 120
66 121
## References
MSH2.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
MYB.md
... ...
@@ -16,7 +16,7 @@ timeline
16 16
|Entity|Tier|Description |
17 17
|:------:|:----:|-----------------------------------------|
18 18
|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established|
19
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
19
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
20 20
21 21
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
22 22
NCOR1.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
NFKB2.md
... ...
@@ -16,7 +16,7 @@ timeline
16 16
|Entity|Tier|Description |
17 17
|:------:|:----:|-----------------------------------------|
18 18
|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established|
19
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
19
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
20 20
21 21
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
22 22
PHF6.md
... ...
@@ -16,7 +16,7 @@ timeline
16 16
|Entity|Tier|Description |
17 17
|:------:|:----:|-----------------------------------------|
18 18
|![BL](images/icons/BL_tier1.png) |1 |high-confidence BL gene |
19
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
19
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
20 20
21 21
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
22 22
PIK3CD.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
PTPRK.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
RUNX1.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
ZFAT.md
... ...
@@ -14,7 +14,7 @@ timeline
14 14
15 15
|Entity|Tier|Description |
16 16
|:------:|:----:|-----------------------------------------|
17
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established|
17
+|![DLBCL](images/icons/DLBCL_tier2.png) |2-F |failed QC|
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20