BL_sankey.md
... ...
@@ -1,8 +1,4 @@
1
-
2
-
3 1
```mermaid
4
-
5
-
6 2
---
7 3
config:
8 4
sankey:
... ...
@@ -13,39 +9,34 @@ config:
13 9
nodeAlignment: right
14 10
---
15 11
sankey-beta
16
-
17
-exome, 2012 exome studies, 64
18
-2012 exome studies, Richter 2012, 5
19
-2012 exome studies, Love 2012, 59
20
-
21
-Richter 2012, Tier 1 BL genes, 5
22
-
23
-Love 2012, Tier 1 BL genes, 3
24
-Love 2012, Tier 2 BL genes, 56
25
-
26
-RNA-seq, 2012 RNA-seq studies, 19
27
-2012 RNA-seq studies, Schmitz 2012, 19
28
-Schmitz 2012, Tier 1 BL genes, 3
29
-Schmitz 2012, Tier 2 BL genes, 16
30
-
31
-
32
-RNA-seq/exome, RNA-seq/exome studies,47
33
-RNA-seq/exome studies, Panea 2019, 47
34
-Panea 2019, Tier 2 BL genes, 43
35
-Panea 2019, Tier 1 BL genes, 4
36
-
37
-WGS,2019 WGS studies,13
38
-2019 WGS studies, Grande 2019, 13
39
-Grande 2019, Tier 1 BL genes, 8
40
-Grande 2019, Tier 2 BL genes, 5
41
-
42
-
43
-Panel, 2022 panel studies, 25
44
-2022 panel studies, Burkhardt 2022, 25
45
-Burkhardt 2022, Tier 2 BL genes, 25
46
-
47
-WGS, 2023 WGS studies, 3
48
-2023 WGS studies, Thomas 2023, 3
49
-Thomas 2023, Tier 2 BL genes, 1
50
-Thomas 2023, Tier 1 BL genes, 2
51
-```
... ...
\ No newline at end of file
0
+Love 2012, BL Tier 1, 3
1
+Love 2012, BL Tier 2, 56
2
+Muppidi 2014, BL Tier 1, 1
3
+Muppidi 2014, BL Tier 2, 2
4
+Schmitz 2012, BL Tier 1, 3
5
+Schmitz 2012, BL Tier 2, 16
6
+Richter 2012, BL Tier 1, 5
7
+Burkhardt 2022, BL Tier 2, 25
8
+Thomas 2023, BL Tier 1, 2
9
+Thomas 2023, BL Tier 2, 3
10
+Grande 2019, BL Tier 1, 9
11
+Grande 2019, BL Tier 2, 4
12
+Panea 2019, BL Tier 1, 4
13
+Panea 2019, BL Tier 2, 46
14
+BL, exome, 59
15
+exome, Love 2012, 59
16
+BL, RNA-seq/WGS/exome, 5
17
+RNA-seq/WGS/exome, Richter 2012, 5
18
+BL, Sanger, 3
19
+Sanger, Muppidi 2014, 3
20
+BL, RNA-seq, 19
21
+RNA-seq, Schmitz 2012, 19
22
+BL, WGS, 13
23
+WGS, Grande 2019, 13
24
+BL, RNA-seq/exome, 50
25
+RNA-seq/exome, Panea 2019, 50
26
+BL, panel, 25
27
+panel, Burkhardt 2022, 25
28
+BL, WGS, 5
29
+WGS, Thomas 2023, 5
30
+```
DLBCL_sankey.md
... ...
@@ -9,63 +9,63 @@ config:
9 9
nodeAlignment: right
10 10
---
11 11
sankey-beta
12
-Arthur 2018, DLBCL Tier 1, 8
13
-Arthur 2018, DLBCL Tier 2, 12
12
+Albuquerque 2017, DLBCL Tier 1, 3
13
+Morin 2016, DLBCL Tier 1, 2
14
+Schmitz 2018, DLBCL Tier 1, 7
15
+Schmitz 2018, DLBCL Tier 2, 9
16
+Pasqualucci 2001, DLBCL Tier 1, 2
17
+Pasqualucci 2001, DLBCL Tier 2, 2
18
+Pasqualucci 2011, DLBCL Tier 1, 3
19
+Pasqualucci 2011, DLBCL Tier 2, 4
14 20
Chapuy 2018, DLBCL Tier 1, 2
15 21
Chapuy 2018, DLBCL Tier 2, 17
16
-Morin 2013, DLBCL Tier 1, 11
17
-Morin 2013, DLBCL Tier 2, 29
18
-Mareschal 2016, DLBCL Tier 1, 2
19
-Pasqualucci 2011, DLBCL Tier 1, 2
20 22
Zhang 2013, DLBCL Tier 1, 11
21 23
Zhang 2013, DLBCL Tier 2, 8
24
+Pasqualucci 2011, DLBCL Tier 1, 2
25
+Lohr 2012, DLBCL Tier 1, 3
26
+Lohr 2012, DLBCL Tier 2, 1
22 27
Pararajalingam 2020, DLBCL Tier 2, 2
23
-Pasqualucci 2001, DLBCL Tier 1, 2
24
-Pasqualucci 2001, DLBCL Tier 2, 2
25
-Reddy 2017, DLBCL Tier 1, 7
26
-Reddy 2017, DLBCL Tier 2, 53
27 28
Hubschmann 2021, DLBCL Tier 1, 3
28 29
Hubschmann 2021, DLBCL Tier 2, 20
29
-Morin 2016, DLBCL Tier 1, 2
30
-Lohr 2012, DLBCL Tier 1, 3
31
-Lohr 2012, DLBCL Tier 2, 1
32
-Albuquerque 2017, DLBCL Tier 1, 3
30
+Mareschal 2016, DLBCL Tier 1, 2
33 31
Morin 2011, DLBCL Tier 1, 24
34 32
Morin 2011, DLBCL Tier 2, 1
35
-Schmitz 2018, DLBCL Tier 1, 7
36
-Schmitz 2018, DLBCL Tier 2, 9
37
-Pasqualucci 2011, DLBCL Tier 1, 3
38
-Pasqualucci 2011, DLBCL Tier 2, 4
39
-DLBCL, Sanger, 4
40
-Sanger, Pasqualucci 2001, 4
41
-DLBCL, WGS/exome, 2
42
-WGS/exome, Pararajalingam 2020, 2
33
+Reddy 2017, DLBCL Tier 1, 7
34
+Reddy 2017, DLBCL Tier 2, 53
35
+Morin 2013, DLBCL Tier 1, 11
36
+Morin 2013, DLBCL Tier 2, 29
37
+Arthur 2018, DLBCL Tier 1, 8
38
+Arthur 2018, DLBCL Tier 2, 12
43 39
DLBCL, exome, 2
44 40
exome, Mareschal 2016, 2
45
-DLBCL, exome, 2
46
-exome, Pasqualucci 2011, 2
47
-DLBCL, WGS, 40
48
-WGS, Morin 2013, 40
49
-DLBCL, exome, 19
50
-exome, Chapuy 2018, 19
41
+DLBCL, WGS, 23
42
+WGS, Hubschmann 2021, 23
43
+DLBCL, WGS/exome, 2
44
+WGS/exome, Pararajalingam 2020, 2
45
+DLBCL, exome, 4
46
+exome, Lohr 2012, 4
51 47
DLBCL, exome, 19
52 48
exome, Zhang 2013, 19
53
-DLBCL, WGS, 20
54
-WGS, Arthur 2018, 20
49
+DLBCL, exome, 2
50
+exome, Pasqualucci 2011, 2
55 51
DLBCL, RNA-seq/WGS, 25
56 52
RNA-seq/WGS, Morin 2011, 25
53
+DLBCL, exome, 60
54
+exome, Reddy 2017, 60
55
+DLBCL, WGS, 20
56
+WGS, Arthur 2018, 20
57
+DLBCL, WGS, 40
58
+WGS, Morin 2013, 40
59
+DLBCL, exome, 2
60
+exome, Morin 2016, 2
57 61
DLBCL, exome, 3
58 62
exome, Albuquerque 2017, 3
59
-DLBCL, exome, 7
60
-exome, Pasqualucci 2011, 7
61 63
DLBCL, exome, 16
62 64
exome, Schmitz 2018, 16
63
-DLBCL, exome, 2
64
-exome, Morin 2016, 2
65
-DLBCL, exome, 4
66
-exome, Lohr 2012, 4
67
-DLBCL, WGS, 23
68
-WGS, Hubschmann 2021, 23
69
-DLBCL, exome, 60
70
-exome, Reddy 2017, 60
65
+DLBCL, Sanger, 4
66
+Sanger, Pasqualucci 2001, 4
67
+DLBCL, exome, 7
68
+exome, Pasqualucci 2011, 7
69
+DLBCL, exome, 19
70
+exome, Chapuy 2018, 19
71 71
```
FL_sankey.md
... ...
@@ -11,24 +11,24 @@ config:
11 11
sankey-beta
12 12
Krysiak 2017, FL Tier 1, 17
13 13
Krysiak 2017, FL Tier 2, 5
14
-Okosun 2016, FL Tier 1, 2
15
-Pasqualucci 2011, FL Tier 1, 2
16 14
Morin 2011, FL Tier 1, 14
17 15
Morin 2011, FL Tier 2, 1
18
-Russler-germain 2023, FL Tier 1, 1
19
-Russler-germain 2023, FL Tier 2, 19
20 16
Hubschmann 2021, FL Tier 1, 2
21 17
Hubschmann 2021, FL Tier 2, 15
22
-FL, RNA-seq/WGS, 15
23
-RNA-seq/WGS, Morin 2011, 15
18
+Pasqualucci 2011, FL Tier 1, 2
19
+Russler-germain 2023, FL Tier 1, 1
20
+Russler-germain 2023, FL Tier 2, 19
21
+Okosun 2016, FL Tier 1, 2
22
+FL, WGS, 2
23
+WGS, Okosun 2016, 2
24 24
FL, exome, 20
25 25
exome, Russler-germain 2023, 20
26
+FL, exome, 2
27
+exome, Pasqualucci 2011, 2
26 28
FL, WGS, 17
27 29
WGS, Hubschmann 2021, 17
28
-FL, WGS, 2
29
-WGS, Okosun 2016, 2
30
+FL, RNA-seq/WGS, 15
31
+RNA-seq/WGS, Morin 2011, 15
30 32
FL, exome, 22
31 33
exome, Krysiak 2017, 22
32
-FL, exome, 2
33
-exome, Pasqualucci 2011, 2
34 34
```
MCL_sankey.md
... ...
@@ -0,0 +1,28 @@
1
+```mermaid
2
+---
3
+config:
4
+ sankey:
5
+ showValues: false
6
+ linkColor: target
7
+ width: 800
8
+ height: 1000
9
+ nodeAlignment: right
10
+---
11
+sankey-beta
12
+Nadeu 2020, MCL Tier 1, 3
13
+Nadeu 2020, MCL Tier 2, 2
14
+Zhang 2014, MCL Tier 1, 2
15
+Zhang 2014, MCL Tier 2, 26
16
+Pararajalingam 2020, MCL Tier 1, 6
17
+Pararajalingam 2020, MCL Tier 2, 1
18
+Bea 2013, MCL Tier 1, 11
19
+Bea 2013, MCL Tier 2, 16
20
+MCL, WGS/exome, 27
21
+WGS/exome, Bea 2013, 27
22
+MCL, WGS, 5
23
+WGS, Nadeu 2020, 5
24
+MCL, exome, 28
25
+exome, Zhang 2014, 28
26
+MCL, WGS/exome, 7
27
+WGS/exome, Pararajalingam 2020, 7
28
+```
all_sankey.md
... ...
@@ -9,131 +9,131 @@ config:
9 9
nodeAlignment: right
10 10
---
11 11
sankey-beta
12
-Arthur 2018, DLBCL Tier 1, 8
13
-Arthur 2018, DLBCL Tier 2, 12
12
+Albuquerque 2017, DLBCL Tier 1, 3
13
+Morin 2016, DLBCL Tier 1, 2
14
+Schmitz 2018, DLBCL Tier 1, 7
15
+Schmitz 2018, DLBCL Tier 2, 9
16
+Pasqualucci 2001, DLBCL Tier 1, 2
17
+Pasqualucci 2001, DLBCL Tier 2, 2
18
+Pasqualucci 2011, DLBCL Tier 1, 3
19
+Pasqualucci 2011, DLBCL Tier 2, 4
14 20
Chapuy 2018, DLBCL Tier 1, 2
15 21
Chapuy 2018, DLBCL Tier 2, 17
16
-Morin 2013, DLBCL Tier 1, 11
17
-Morin 2013, DLBCL Tier 2, 29
18
-Mareschal 2016, DLBCL Tier 1, 2
19
-Pasqualucci 2011, DLBCL Tier 1, 2
20 22
Zhang 2013, DLBCL Tier 1, 11
21 23
Zhang 2013, DLBCL Tier 2, 8
24
+Pasqualucci 2011, DLBCL Tier 1, 2
25
+Lohr 2012, DLBCL Tier 1, 3
26
+Lohr 2012, DLBCL Tier 2, 1
22 27
Pararajalingam 2020, DLBCL Tier 2, 2
23
-Pasqualucci 2001, DLBCL Tier 1, 2
24
-Pasqualucci 2001, DLBCL Tier 2, 2
25
-Reddy 2017, DLBCL Tier 1, 7
26
-Reddy 2017, DLBCL Tier 2, 53
27 28
Hubschmann 2021, DLBCL Tier 1, 3
28 29
Hubschmann 2021, DLBCL Tier 2, 20
29
-Morin 2016, DLBCL Tier 1, 2
30
-Lohr 2012, DLBCL Tier 1, 3
31
-Lohr 2012, DLBCL Tier 2, 1
32
-Albuquerque 2017, DLBCL Tier 1, 3
30
+Mareschal 2016, DLBCL Tier 1, 2
33 31
Morin 2011, DLBCL Tier 1, 24
34 32
Morin 2011, DLBCL Tier 2, 1
35
-Schmitz 2018, DLBCL Tier 1, 7
36
-Schmitz 2018, DLBCL Tier 2, 9
37
-Pasqualucci 2011, DLBCL Tier 1, 3
38
-Pasqualucci 2011, DLBCL Tier 2, 4
33
+Reddy 2017, DLBCL Tier 1, 7
34
+Reddy 2017, DLBCL Tier 2, 53
35
+Morin 2013, DLBCL Tier 1, 11
36
+Morin 2013, DLBCL Tier 2, 29
37
+Arthur 2018, DLBCL Tier 1, 8
38
+Arthur 2018, DLBCL Tier 2, 12
39 39
Krysiak 2017, FL Tier 1, 17
40 40
Krysiak 2017, FL Tier 2, 5
41
-Okosun 2016, FL Tier 1, 2
42
-Pasqualucci 2011, FL Tier 1, 2
43 41
Morin 2011, FL Tier 1, 14
44 42
Morin 2011, FL Tier 2, 1
45
-Russler-germain 2023, FL Tier 1, 1
46
-Russler-germain 2023, FL Tier 2, 19
47 43
Hubschmann 2021, FL Tier 1, 2
48 44
Hubschmann 2021, FL Tier 2, 15
45
+Pasqualucci 2011, FL Tier 1, 2
46
+Russler-germain 2023, FL Tier 1, 1
47
+Russler-germain 2023, FL Tier 2, 19
48
+Okosun 2016, FL Tier 1, 2
49
+Love 2012, BL Tier 1, 3
50
+Love 2012, BL Tier 2, 56
51
+Muppidi 2014, BL Tier 1, 1
52
+Muppidi 2014, BL Tier 2, 2
49 53
Schmitz 2012, BL Tier 1, 3
50 54
Schmitz 2012, BL Tier 2, 16
51 55
Richter 2012, BL Tier 1, 5
52
-Panea 2019, BL Tier 1, 4
53
-Panea 2019, BL Tier 2, 46
54
-Love 2012, BL Tier 1, 3
55
-Love 2012, BL Tier 2, 56
56
+Burkhardt 2022, BL Tier 2, 25
56 57
Thomas 2023, BL Tier 1, 2
57 58
Thomas 2023, BL Tier 2, 3
58
-Burkhardt 2022, BL Tier 2, 25
59 59
Grande 2019, BL Tier 1, 9
60 60
Grande 2019, BL Tier 2, 4
61
-Muppidi 2014, BL Tier 1, 1
62
-Muppidi 2014, BL Tier 2, 2
61
+Panea 2019, BL Tier 1, 4
62
+Panea 2019, BL Tier 2, 46
63
+Nadeu 2020, MCL Tier 1, 3
64
+Nadeu 2020, MCL Tier 2, 2
63 65
Zhang 2014, MCL Tier 1, 2
64 66
Zhang 2014, MCL Tier 2, 26
65
-Bea 2013, MCL Tier 1, 11
66
-Bea 2013, MCL Tier 2, 16
67 67
Pararajalingam 2020, MCL Tier 1, 6
68 68
Pararajalingam 2020, MCL Tier 2, 1
69
-Nadeu 2020, MCL Tier 1, 3
70
-Nadeu 2020, MCL Tier 2, 2
71
-DLBCL, Sanger, 4
72
-Sanger, Pasqualucci 2001, 4
73
-DLBCL, WGS/exome, 2
74
-WGS/exome, Pararajalingam 2020, 2
69
+Bea 2013, MCL Tier 1, 11
70
+Bea 2013, MCL Tier 2, 16
75 71
DLBCL, exome, 2
76 72
exome, Mareschal 2016, 2
77
-DLBCL, exome, 2
78
-exome, Pasqualucci 2011, 2
79
-DLBCL, WGS, 40
80
-WGS, Morin 2013, 40
81
-DLBCL, exome, 19
82
-exome, Chapuy 2018, 19
73
+DLBCL, WGS, 23
74
+WGS, Hubschmann 2021, 23
75
+DLBCL, WGS/exome, 2
76
+WGS/exome, Pararajalingam 2020, 2
77
+DLBCL, exome, 4
78
+exome, Lohr 2012, 4
83 79
DLBCL, exome, 19
84 80
exome, Zhang 2013, 19
85
-DLBCL, WGS, 20
86
-WGS, Arthur 2018, 20
81
+DLBCL, exome, 2
82
+exome, Pasqualucci 2011, 2
87 83
DLBCL, RNA-seq/WGS, 25
88 84
RNA-seq/WGS, Morin 2011, 25
85
+DLBCL, exome, 60
86
+exome, Reddy 2017, 60
87
+DLBCL, WGS, 20
88
+WGS, Arthur 2018, 20
89
+DLBCL, WGS, 40
90
+WGS, Morin 2013, 40
91
+DLBCL, exome, 2
92
+exome, Morin 2016, 2
89 93
DLBCL, exome, 3
90 94
exome, Albuquerque 2017, 3
91
-DLBCL, exome, 7
92
-exome, Pasqualucci 2011, 7
93 95
DLBCL, exome, 16
94 96
exome, Schmitz 2018, 16
95
-DLBCL, exome, 2
96
-exome, Morin 2016, 2
97
-DLBCL, exome, 4
98
-exome, Lohr 2012, 4
99
-DLBCL, WGS, 23
100
-WGS, Hubschmann 2021, 23
101
-DLBCL, exome, 60
102
-exome, Reddy 2017, 60
103
-FL, RNA-seq/WGS, 15
104
-RNA-seq/WGS, Morin 2011, 15
97
+DLBCL, Sanger, 4
98
+Sanger, Pasqualucci 2001, 4
99
+DLBCL, exome, 7
100
+exome, Pasqualucci 2011, 7
101
+DLBCL, exome, 19
102
+exome, Chapuy 2018, 19
103
+FL, WGS, 2
104
+WGS, Okosun 2016, 2
105 105
FL, exome, 20
106 106
exome, Russler-germain 2023, 20
107
+FL, exome, 2
108
+exome, Pasqualucci 2011, 2
107 109
FL, WGS, 17
108 110
WGS, Hubschmann 2021, 17
109
-FL, WGS, 2
110
-WGS, Okosun 2016, 2
111
+FL, RNA-seq/WGS, 15
112
+RNA-seq/WGS, Morin 2011, 15
111 113
FL, exome, 22
112 114
exome, Krysiak 2017, 22
113
-FL, exome, 2
114
-exome, Pasqualucci 2011, 2
115
-BL, WGS, 5
116
-WGS, Thomas 2023, 5
117
-BL, RNA-seq/exome, 50
118
-RNA-seq/exome, Panea 2019, 50
119 115
BL, exome, 59
120 116
exome, Love 2012, 59
121
-BL, panel, 25
122
-panel, Burkhardt 2022, 25
123
-BL, WGS, 13
124
-WGS, Grande 2019, 13
125
-BL, Sanger, 3
126
-Sanger, Muppidi 2014, 3
127 117
BL, RNA-seq/WGS/exome, 5
128 118
RNA-seq/WGS/exome, Richter 2012, 5
119
+BL, Sanger, 3
120
+Sanger, Muppidi 2014, 3
129 121
BL, RNA-seq, 19
130 122
RNA-seq, Schmitz 2012, 19
131
-MCL, WGS/exome, 7
132
-WGS/exome, Pararajalingam 2020, 7
133
-MCL, WGS, 5
134
-WGS, Nadeu 2020, 5
123
+BL, WGS, 13
124
+WGS, Grande 2019, 13
125
+BL, RNA-seq/exome, 50
126
+RNA-seq/exome, Panea 2019, 50
127
+BL, panel, 25
128
+panel, Burkhardt 2022, 25
129
+BL, WGS, 5
130
+WGS, Thomas 2023, 5
135 131
MCL, WGS/exome, 27
136 132
WGS/exome, Bea 2013, 27
133
+MCL, WGS, 5
134
+WGS, Nadeu 2020, 5
137 135
MCL, exome, 28
138 136
exome, Zhang 2014, 28
137
+MCL, WGS/exome, 7
138
+WGS/exome, Pararajalingam 2020, 7
139 139
```