abateDistinctViralMutational2015a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @abateDistinctViralMutational2015a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CCNF|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[CCNF](CCNF)|2 |
10 10
11 11
# References
12 12
albuquerqueEnhancingKnowledgeDiscovery2017a.md
... ...
@@ -4,11 +4,11 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @albuquerqueEnhancingKnowledgeDiscovery2017a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TMSB4X|DLBCL|
10
-|BTK|DLBCL|
11
-|TET2|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[BTK](BTK)|1 |
10
+|[TET2](TET2)|1 |
11
+|[TMSB4X](TMSB4X)|1 |
12 12
13 13
# References
14 14
arthurGenomewideDiscoverySomatic2018.md
... ...
@@ -4,28 +4,28 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @arthurGenomewideDiscoverySomatic2018
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ETV6|DLBCL|
10
-|AICDA|DLBCL|
11
-|PIM2|DLBCL|
12
-|TBC1D4|DLBCL|
13
-|NEAT1|DLBCL|
14
-|LCOR|DLBCL|
15
-|RFTN1|DLBCL|
16
-|MALAT1|DLBCL|
17
-|OSBPL10|DLBCL|
18
-|CD74|DLBCL|
19
-|MEF2C|DLBCL|
20
-|SERPINA9|DLBCL|
21
-|ZC3H12A|DLBCL|
22
-|BIRC3|DLBCL|
23
-|ZCCHC7|DLBCL|
24
-|CD44|DLBCL|
25
-|GRHPR|DLBCL|
26
-|LPP|DLBCL|
27
-|BCL7A|DLBCL|
28
-|ST6GAL1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[AICDA](AICDA)|2 |
10
+|[BCL7A](BCL7A)|1 |
11
+|[BIRC3](BIRC3)|2 |
12
+|[CD44](CD44)|2 |
13
+|[CD74](CD74)|2 |
14
+|[ETV6](ETV6)|1 |
15
+|[GRHPR](GRHPR)|1 |
16
+|[LCOR](LCOR)|1 |
17
+|[LPP](LPP)|2 |
18
+|[MALAT1](MALAT1)|2 |
19
+|[MEF2C](MEF2C)|1 |
20
+|[NEAT1](NEAT1)|2 |
21
+|[OSBPL10](OSBPL10)|1 |
22
+|[PIM2](PIM2)|1 |
23
+|[RFTN1](RFTN1)|2 |
24
+|[SERPINA9](SERPINA9)|2 |
25
+|[ST6GAL1](ST6GAL1)|2 |
26
+|[TBC1D4](TBC1D4)|2 |
27
+|[ZC3H12A](ZC3H12A)|1 |
28
+|[ZCCHC7](ZCCHC7)|2 |
29 29
30 30
# References
31 31
barariaCathepsinAlterationsInduce2020c.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @barariaCathepsinAlterationsInduce2020c
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CTSS|FL|
7
+|New gene|FL tier|
8
+|:-|:-:|
9
+|[CTSS](CTSS)|1 |
10 10
11 11
# References
12 12
beaLandscapeSomaticMutations2013.md
... ...
@@ -4,35 +4,35 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @beaLandscapeSomaticMutations2013
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PDLIM3|MCL|
10
-|NOTCH1|MCL|
11
-|CCND1|MCL|
12
-|BIRC3|MCL|
13
-|TRPM6|MCL|
14
-|TLR2|MCL|
15
-|CHMP4C|MCL|
16
-|ABCA3|MCL|
17
-|LUZP4|MCL|
18
-|RGS4|MCL|
19
-|KMT2D|MCL|
20
-|KIAA1671|MCL|
21
-|PCSK2|MCL|
22
-|ATM|MCL|
23
-|CRYBG3|MCL|
24
-|KCNC2|MCL|
25
-|ABCC9|MCL|
26
-|SP140|MCL|
27
-|MEF2B|MCL|
28
-|TP53|MCL|
29
-|TNRC6B|MCL|
30
-|DLGAP2|MCL|
31
-|DCP1B|MCL|
32
-|NSD2|MCL|
33
-|DNAJC6|MCL|
34
-|NOTCH2|MCL|
35
-|SLC17A6|MCL|
7
+|New gene|MCL tier|
8
+|:-|:-:|
9
+|[ABCA3](ABCA3)|2 |
10
+|[ABCC9](ABCC9)|2 |
11
+|[ATM](ATM)|1 |
12
+|[BIRC3](BIRC3)|1 |
13
+|[CCND1](CCND1)|1 |
14
+|[CHMP4C](CHMP4C)|2 |
15
+|[CRYBG3](CRYBG3)|2 |
16
+|[DCP1B](DCP1B)|2 |
17
+|[DLGAP2](DLGAP2)|2 |
18
+|[DNAJC6](DNAJC6)|2 |
19
+|[KCNC2](KCNC2)|2 |
20
+|[KIAA1671](KIAA1671)|2 |
21
+|[KMT2D](KMT2D)|1 |
22
+|[LUZP4](LUZP4)|2 |
23
+|[MEF2B](MEF2B)|1 |
24
+|[NOTCH1](NOTCH1)|1 |
25
+|[NOTCH2](NOTCH2)|1 |
26
+|[NSD2](NSD2)|1 |
27
+|[PCSK2](PCSK2)|2 |
28
+|[PDLIM3](PDLIM3)|2 |
29
+|[RGS4](RGS4)|2 |
30
+|[SLC17A6](SLC17A6)|2 |
31
+|[SP140](SP140)|1 |
32
+|[TLR2](TLR2)|1 |
33
+|[TNRC6B](TNRC6B)|2 |
34
+|[TP53](TP53)|1 |
35
+|[TRPM6](TRPM6)|2 |
36 36
37 37
# References
38 38
bohleRoleEarlyBcell2013.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @bohleRoleEarlyBcell2013
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|EBF1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[EBF1](EBF1)|1 |
10 10
11 11
# References
12 12
braggioGenomicAnalysisMarginal2012.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @braggioGenomicAnalysisMarginal2012
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ATM|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[ATM](ATM)|1 |
10 10
11 11
# References
12 12
burkhardtClinicalRelevanceMolecular2022b.md
... ...
@@ -4,33 +4,33 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @burkhardtClinicalRelevanceMolecular2022b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|SAL3|BL|
10
-|REV3L|BL|
11
-|PIM1|BL|
12
-|E2F2|BL|
13
-|PPP6R2|BL|
14
-|ADNP|BL|
15
-|ZAN|BL|
16
-|CHD4|BL|
17
-|RPL10|BL|
18
-|KLHL26|BL|
19
-|BTG1|BL|
20
-|ADAMTS5|BL|
21
-|BCL2|BL|
22
-|EDNRB|BL|
23
-|TTN|BL|
24
-|HLA-DQB1|BL|
25
-|PREX1|BL|
26
-|ERAP1|BL|
27
-|CPXM2|BL|
28
-|ZNF85|BL|
29
-|VWA7|BL|
30
-|CD79A|BL|
31
-|ZBTB7A|BL|
32
-|AGO4|BL|
33
-|NOA1|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[ADAMTS5](ADAMTS5)|2 |
10
+|[ADNP](ADNP)|2 |
11
+|[AGO4](AGO4)|2 |
12
+|[BCL2](BCL2)|2 |
13
+|[BTG1](BTG1)|2 |
14
+|[CD79A](CD79A)|2 |
15
+|[CHD4](CHD4)|2 |
16
+|[CPXM2](CPXM2)|2 |
17
+|[E2F2](E2F2)|2 |
18
+|[EDNRB](EDNRB)|2 |
19
+|[ERAP1](ERAP1)|2 |
20
+|[HLA-DQB1](HLA-DQB1)|2 |
21
+|[KLHL26](KLHL26)|2 |
22
+|[NOA1](NOA1)|2 |
23
+|[PIM1](PIM1)|2 |
24
+|[PPP6R2](PPP6R2)|2 |
25
+|[PREX1](PREX1)|2 |
26
+|[REV3L](REV3L)|2 |
27
+|[RPL10](RPL10)|2 |
28
+|[SAL3](SAL3)|2 |
29
+|[TTN](TTN)|2 |
30
+|[VWA7](VWA7)|2 |
31
+|[ZAN](ZAN)|2 |
32
+|[ZBTB7A](ZBTB7A)|2 |
33
+|[ZNF85](ZNF85)|2 |
34 34
35 35
# References
36 36
chapuyMolecularSubtypesDiffuse2018b.md
... ...
@@ -4,27 +4,27 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @chapuyMolecularSubtypesDiffuse2018b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CCL4|DLBCL|
10
-|TLR2|DLBCL|
11
-|LYN|DLBCL|
12
-|LTB|DLBCL|
13
-|GABRA2|DLBCL|
14
-|NAV1|DLBCL|
15
-|IL6|DLBCL|
16
-|NLRP8|DLBCL|
17
-|NANOG|DLBCL|
18
-|CRIP1|DLBCL|
19
-|PRPS1|DLBCL|
20
-|COQ7|DLBCL|
21
-|FUT5|DLBCL|
22
-|HIST1H1B|DLBCL|
23
-|SMEK1|DLBCL|
24
-|DOCK1|DLBCL|
25
-|PDE4DIP|DLBCL|
26
-|ZNF423|DLBCL|
27
-|RAD9A|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[CCL4](CCL4)|2 |
10
+|[COQ7](COQ7)|2 |
11
+|[CRIP1](CRIP1)|2 |
12
+|[DOCK1](DOCK1)|2 |
13
+|[FUT5](FUT5)|2 |
14
+|[GABRA2](GABRA2)|2 |
15
+|[HIST1H1B](HIST1H1B)|1 |
16
+|[IL6](IL6)|2 |
17
+|[LTB](LTB)|1 |
18
+|[LYN](LYN)|2 |
19
+|[NANOG](NANOG)|2 |
20
+|[NAV1](NAV1)|2 |
21
+|[NLRP8](NLRP8)|2 |
22
+|[PDE4DIP](PDE4DIP)|2 |
23
+|[PRPS1](PRPS1)|2 |
24
+|[RAD9A](RAD9A)|2 |
25
+|[SMEK1](SMEK1)|2 |
26
+|[TLR2](TLR2)|2 |
27
+|[ZNF423](ZNF423)|2 |
28 28
29 29
# References
30 30
cheungAcquiredTNFRSF14Mutations2010a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @cheungAcquiredTNFRSF14Mutations2010a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TNFRSF14|FL,DLBCL|
7
+|New gene|FL tier|DLBCL tier|
8
+|:-|:-:|:-:|
9
+|[TNFRSF14](TNFRSF14)|1 |1 |
10 10
11 11
# References
12 12
compagnoMutationsMultipleGenes2009a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @compagnoMutationsMultipleGenes2009a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TNFAIP3|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[TNFAIP3](TNFAIP3)|1 |
10 10
11 11
# References
12 12
deschGenotypingCirculatingTumor2020.md
... ...
@@ -4,18 +4,18 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @deschGenotypingCirculatingTumor2020
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|EZR|PMBL|
10
-|CDH2|PMBL|
11
-|KLF2|PMBL|
12
-|LTB|PMBL|
13
-|IGLL5|PMBL|
14
-|KMT2D|PMBL|
15
-|ACTG1|PMBL|
16
-|HLA-A|PMBL|
17
-|MYB|PMBL|
18
-|CCND3|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[ACTG1](ACTG1)|2 |
10
+|[CCND3](CCND3)|2 |
11
+|[CDH2](CDH2)|2 |
12
+|[EZR](EZR)|2 |
13
+|[HLA-A](HLA-A)|2 |
14
+|[IGLL5](IGLL5)|2 |
15
+|[KLF2](KLF2)|2 |
16
+|[KMT2D](KMT2D)|2 |
17
+|[LTB](LTB)|1 |
18
+|[MYB](MYB)|2 |
19 19
20 20
# References
21 21
dunsCharacterizationDLBCLPMBL2021b.md
... ...
@@ -4,22 +4,22 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @dunsCharacterizationDLBCLPMBL2021b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CREBBP|PMBL|
10
-|RFTN1|PMBL|
11
-|MYC|PMBL|
12
-|LPHN3|PMBL|
13
-|CD83|PMBL|
14
-|SGK1|PMBL|
15
-|MCL1|PMBL|
16
-|PIM1|PMBL|
17
-|HRNR|PMBL|
18
-|DUSP2|PMBL|
19
-|BIRC3|PMBL|
20
-|IL4R|DLBCL|
21
-|FOXO1|PMBL|
22
-|WDR87|PMBL|
7
+|New gene|PMBL tier|DLBCL tier|
8
+|:-|:-:|:-:|
9
+|[BIRC3](BIRC3)|2 |2 |
10
+|[CD83](CD83)|1 |1 |
11
+|[CREBBP](CREBBP)|1 |1 |
12
+|[DUSP2](DUSP2)|1 |1 |
13
+|[FOXO1](FOXO1)|2 |1 |
14
+|[HRNR](HRNR)|2 | |
15
+|[IL4R](IL4R)|1 |1 |
16
+|[LPHN3](LPHN3)|2 | |
17
+|[MCL1](MCL1)|2 |2 |
18
+|[MYC](MYC)|2 |1 |
19
+|[PIM1](PIM1)|1 |1 |
20
+|[RFTN1](RFTN1)|2 |2 |
21
+|[SGK1](SGK1)|1 |1 |
22
+|[WDR87](WDR87)|2 | |
23 23
24 24
# References
25 25
ganapathiGeneticLandscapeDural2016.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @ganapathiGeneticLandscapeDural2016
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|KLHL6|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[KLHL6](KLHL6)|1 |
10 10
11 11
# References
12 12
gomezUltraDeepSequencingReveals2023.md
... ...
@@ -4,15 +4,15 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @gomezUltraDeepSequencingReveals2023
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|DTX1|PMBL|
10
-|CDH5|PMBL|
11
-|ARID5B|PMBL|
12
-|OR13C2|PMBL|
13
-|LIMD2|PMBL|
14
-|AXDND1|PMBL|
15
-|HLA-C|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[ARID5B](ARID5B)|1 |
10
+|[AXDND1](AXDND1)|2 |
11
+|[CDH5](CDH5)|2 |
12
+|[DTX1](DTX1)|1 |
13
+|[HLA-C](HLA-C)|2 |
14
+|[LIMD2](LIMD2)|2 |
15
+|[OR13C2](OR13C2)|2 |
16 16
17 17
# References
18 18
grandeGenomewideDiscoverySomatic2019.md
... ...
@@ -4,21 +4,21 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @grandeGenomewideDiscoverySomatic2019
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CDKN2A|BL|
10
-|SIN3A|BL|
11
-|KMT2D|BL|
12
-|RFX7|BL|
13
-|TFAP4|BL|
14
-|CHD8|BL|
15
-|USP7|BL|
16
-|BCL7A|BL|
17
-|TCL1A|BL|
18
-|GNAI2|BL|
19
-|HIST1H1E|BL|
20
-|MIR142|BL|
21
-|BACH2|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[BACH2](BACH2)|2 |
10
+|[BCL7A](BCL7A)|1 |
11
+|[CDKN2A](CDKN2A)|2 |
12
+|[CHD8](CHD8)|1 |
13
+|[GNAI2](GNAI2)|1 |
14
+|[HIST1H1E](HIST1H1E)|2 |
15
+|[KMT2D](KMT2D)|1 |
16
+|[MIR142](MIR142)|2 |
17
+|[RFX7](RFX7)|1 |
18
+|[SIN3A](SIN3A)|1 |
19
+|[TCL1A](TCL1A)|1 |
20
+|[TFAP4](TFAP4)|1 |
21
+|[USP7](USP7)|1 |
22 22
23 23
# References
24 24
gunawardanaRecurrentSomaticMutations2014c.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @gunawardanaRecurrentSomaticMutations2014c
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PTPN1|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[PTPN1](PTPN1)|1 |
10 10
11 11
# References
12 12
hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -4,46 +4,46 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @hubschmannMutationalMechanismsShaping2021b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PDS5B|FL|
10
-|GAK|DLBCL|
11
-|ACTG1|DLBCL,FL|
12
-|ZNF217|DLBCL|
13
-|CCDC42BPB|FL|
14
-|LAPTM5|FL|
15
-|DHX15|FL|
16
-|MGEA5|FL|
17
-|EEF1A1|DLBCL,FL|
18
-|SLC34A2|DLBCL|
19
-|DHX16|DLBCL|
20
-|PPP4C|FL|
21
-|FZR1|FL|
22
-|IRF1|DLBCL|
23
-|HLA-DQA1|DLBCL|
24
-|RAC2|DLBCL|
25
-|PRKDC|FL|
26
-|MYCBP2|FL|
27
-|CADPS2|DLBCL|
28
-|RBM6|FL|
29
-|UNC5B|DLBCL|
30
-|CPNE8|FL|
31
-|LRP12|DLBCL|
32
-|CNOT2|DLBCL|
33
-|IKBKE|DLBCL|
34
-|SIAH2|DLBCL|
35
-|ANKRD12|DLBCL|
36
-|JUP|FL|
37
-|PNPO|DLBCL|
38
-|WNK1|DLBCL|
39
-|DNM2|DLBCL|
40
-|FBXO11|DLBCL|
41
-|N2RF2|DLBCL|
42
-|VMA21|FL|
43
-|ADAMTS1|DLBCL|
44
-|TRAF6|DLBCL|
45
-|TPP1|FL|
46
-|ATP6V1A|FL|
7
+|New gene|FL tier|DLBCL tier|
8
+|:-|:-:|:-:|
9
+|[ACTG1](ACTG1)|2 |1 |
10
+|[ADAMTS1](ADAMTS1)| |2 |
11
+|[ANKRD12](ANKRD12)| |2 |
12
+|[ATP6V1A](ATP6V1A)|2 | |
13
+|[CADPS2](CADPS2)| |2 |
14
+|[CCDC42BPB](CCDC42BPB)|2 | |
15
+|[CNOT2](CNOT2)| |2 |
16
+|[CPNE8](CPNE8)|2 | |
17
+|[DHX15](DHX15)|2 | |
18
+|[DHX16](DHX16)| |2 |
19
+|[DNM2](DNM2)| |2 |
20
+|[EEF1A1](EEF1A1)|1 |1 |
21
+|[FBXO11](FBXO11)| |1 |
22
+|[FZR1](FZR1)|2 | |
23
+|[GAK](GAK)| |2 |
24
+|[HLA-DQA1](HLA-DQA1)| |2 |
25
+|[IKBKE](IKBKE)| |2 |
26
+|[IRF1](IRF1)| |2 |
27
+|[JUP](JUP)|2 | |
28
+|[LAPTM5](LAPTM5)|2 |2 |
29
+|[LRP12](LRP12)| |2 |
30
+|[MGEA5](MGEA5)|2 | |
31
+|[MYCBP2](MYCBP2)|2 | |
32
+|[N2RF2](N2RF2)| |2 |
33
+|[PDS5B](PDS5B)|2 |2 |
34
+|[PNPO](PNPO)| |2 |
35
+|[PPP4C](PPP4C)|2 | |
36
+|[PRKDC](PRKDC)|2 |2 |
37
+|[RAC2](RAC2)| |2 |
38
+|[RBM6](RBM6)|2 | |
39
+|[SIAH2](SIAH2)| |2 |
40
+|[SLC34A2](SLC34A2)| |2 |
41
+|[TPP1](TPP1)|2 | |
42
+|[TRAF6](TRAF6)| |2 |
43
+|[UNC5B](UNC5B)| |2 |
44
+|[VMA21](VMA21)|1 | |
45
+|[WNK1](WNK1)| |2 |
46
+|[ZNF217](ZNF217)| |2 |
47 47
48 48
# References
49 49
jalladesExomeSequencingIdentifies2017.md
... ...
@@ -4,36 +4,36 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @jalladesExomeSequencingIdentifies2017
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|KLF2|MZL|
10
-|MYC|MZL|
11
-|WNK1|MZL|
12
-|KIF26A|MZL|
13
-|HIST1H2AD|MZL|
14
-|ARHGEF17|MZL|
15
-|EZH1|MZL|
16
-|DTX3L|MZL|
17
-|NCOA6|MZL|
18
-|MYLK|MZL|
19
-|CCND3|MZL|
20
-|ARHGAP20|MZL|
21
-|HRAS|MZL|
22
-|DNAH5|MZL|
23
-|HIST1H1D|MZL|
24
-|MGA|MZL|
25
-|KDM6A|MZL|
26
-|ROCK1|MZL|
27
-|RAF1|MZL|
28
-|NRAS|MZL|
29
-|DNAH7|MZL|
30
-|ARHGEF15|MZL|
31
-|BCOR|MZL|
32
-|TBK1|MZL|
33
-|DNAI1|MZL|
34
-|KAT6A|MZL|
35
-|DOCK6|MZL|
36
-|HIST4H4|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[ARHGAP20](ARHGAP20)|2 |
10
+|[ARHGEF15](ARHGEF15)|2 |
11
+|[ARHGEF17](ARHGEF17)|2 |
12
+|[BCOR](BCOR)|2 |
13
+|[CCND3](CCND3)|1 |
14
+|[DNAH5](DNAH5)|2 |
15
+|[DNAH7](DNAH7)|2 |
16
+|[DNAI1](DNAI1)|2 |
17
+|[DOCK6](DOCK6)|2 |
18
+|[DTX3L](DTX3L)|2 |
19
+|[EZH1](EZH1)|2 |
20
+|[HIST1H1D](HIST1H1D)|2 |
21
+|[HIST1H2AD](HIST1H2AD)|2 |
22
+|[HIST4H4](HIST4H4)|2 |
23
+|[HRAS](HRAS)|2 |
24
+|[KAT6A](KAT6A)|2 |
25
+|[KDM6A](KDM6A)|2 |
26
+|[KIF26A](KIF26A)|2 |
27
+|[KLF2](KLF2)|1 |
28
+|[MGA](MGA)|2 |
29
+|[MYC](MYC)|2 |
30
+|[MYLK](MYLK)|2 |
31
+|[NCOA6](NCOA6)|2 |
32
+|[NRAS](NRAS)|2 |
33
+|[RAF1](RAF1)|2 |
34
+|[ROCK1](ROCK1)|2 |
35
+|[TBK1](TBK1)|2 |
36
+|[WNK1](WNK1)|2 |
37 37
38 38
# References
39 39
jardinRecurrentMutationsExportin2016a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @jardinRecurrentMutationsExportin2016a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|XPO1|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[XPO1](XPO1)|1 |
10 10
11 11
# References
12 12
khodabakhshiRecurrentTargetsAberrant2012.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @khodabakhshiRecurrentTargetsAberrant2012
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CXCR4|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[CXCR4](CXCR4)|1 |
10 10
11 11
# References
12 12
krysiakRecurrentSomaticMutations2017b.md
... ...
@@ -4,30 +4,30 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @krysiakRecurrentSomaticMutations2017b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|EGR1|FL|
10
-|BTK|FL|
11
-|ARID1A|FL|
12
-|HIST1H2BG|FL|
13
-|HIST1H2AM|FL|
14
-|HIST1H3G|FL|
15
-|HIST1H1E|FL|
16
-|HIST1H2AC|FL|
17
-|HVCN1|FL|
18
-|ZNF608|FL|
19
-|HIST1H3I|FL|
20
-|HIST1H1D|FL|
21
-|HIST1H2BD|FL|
22
-|HIST1H1B|FL|
23
-|SMARCA4|FL|
24
-|POU2F2|FL|
25
-|POU2AF1|FL|
26
-|HIST1H2AG|FL|
27
-|BCL7A|FL|
28
-|HIST1H2BM|FL|
29
-|CXCR4|FL|
30
-|HIST1H2BC|FL|
7
+|New gene|FL tier|
8
+|:-|:-:|
9
+|[ARID1A](ARID1A)|1 |
10
+|[BCL7A](BCL7A)|1 |
11
+|[BTK](BTK)|1 |
12
+|[CXCR4](CXCR4)|2 |
13
+|[EGR1](EGR1)|2 |
14
+|[HIST1H1B](HIST1H1B)|1 |
15
+|[HIST1H1D](HIST1H1D)|1 |
16
+|[HIST1H1E](HIST1H1E)|1 |
17
+|[HIST1H2AC](HIST1H2AC)|1 |
18
+|[HIST1H2AG](HIST1H2AG)|1 |
19
+|[HIST1H2AM](HIST1H2AM)|1 |
20
+|[HIST1H2BC](HIST1H2BC)|1 |
21
+|[HIST1H2BD](HIST1H2BD)|1 |
22
+|[HIST1H2BG](HIST1H2BG)|1 |
23
+|[HIST1H2BM](HIST1H2BM)|2 |
24
+|[HIST1H3G](HIST1H3G)|1 |
25
+|[HIST1H3I](HIST1H3I)|2 |
26
+|[HVCN1](HVCN1)|1 |
27
+|[POU2AF1](POU2AF1)|1 |
28
+|[POU2F2](POU2F2)|1 |
29
+|[SMARCA4](SMARCA4)|1 |
30
+|[ZNF608](ZNF608)|2 |
31 31
32 32
# References
33 33
kwanhianMicroRNA142Mutated202012b.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @kwanhianMicroRNA142Mutated202012b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MIR142|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[MIR142](MIR142)|2 |
10 10
11 11
# References
12 12
lakeMutationsNFKBIAEncoding2009.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @lakeMutationsNFKBIAEncoding2009
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|NFKBIA|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[NFKBIA](NFKBIA)|1 |
10 10
11 11
# References
12 12
lenzOncogenicCARD11Mutations2008.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @lenzOncogenicCARD11Mutations2008
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CARD11|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[CARD11](CARD11)|1 |
10 10
11 11
# References
12 12
lohrDiscoveryPrioritizationSomatic2012a.md
... ...
@@ -4,12 +4,12 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @lohrDiscoveryPrioritizationSomatic2012a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PCLO|DLBCL|
10
-|KRAS|DLBCL|
11
-|ACTB|DLBCL|
12
-|P2RY8|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[ACTB](ACTB)|1 |
10
+|[KRAS](KRAS)|1 |
11
+|[P2RY8](P2RY8)|1 |
12
+|[PCLO](PCLO)|2 |
13 13
14 14
# References
15 15
louissaintPediatrictypeNodalFollicular2016a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @louissaintPediatrictypeNodalFollicular2016a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MAP2K1|FL|
7
+|New gene|FL tier|
8
+|:-|:-:|
9
+|[MAP2K1](MAP2K1)|1 |
10 10
11 11
# References
12 12
loveGeneticLandscapeMutations2012.md
... ...
@@ -4,67 +4,67 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @loveGeneticLandscapeMutations2012
7
-|New gene|Entity (Current Tier)|
8
-|:-:|:-:|
9
-|NOTCH1|BL (2) |
10
-|PC|BL (2) |
11
-|EZH2|BL (2) |
12
-|FAM129B|BL (2) |
13
-|PRSS22|BL (2) |
14
-|CYP4F22|BL (2) |
15
-|MAP3K6|BL (2) |
16
-|FGFR3|BL (2) |
17
-|ZNF229|BL (2) |
18
-|EPHB2|BL (2) |
19
-|EML2|BL (2) |
20
-|CREBBP|BL (2) |
21
-|BRD4|BL (2) |
22
-|POLRMT|BL (2) |
23
-|C6orf27|BL (2) |
24
-|RBP3|BL (2) |
25
-|EIF2C4|BL (2) |
26
-|ICK|BL (2) |
27
-|POR|BL (2) |
28
-|ATP2C2|BL (2) |
29
-|NRXN2|BL (2) |
30
-|TIGD6|BL (2) |
31
-|ENTPD3|BL (2) |
32
-|SF3B1|BL (2) |
33
-|DLGAP1|BL (2) |
34
-|PTPRN|BL (2) |
35
-|RET|BL (2) |
36
-|TPST2|BL (2) |
37
-|FTCD|BL (2) |
38
-|TBC1D9B|BL (2) |
39
-|RANBP6|BL (2) |
40
-|CAD|BL (2) |
41
-|P2RY2|BL (2) |
42
-|SYNGAP1|BL (2) |
43
-|CCT6B|BL (2) |
44
-|CYB5D1|BL (2) |
45
-|ARID1A|BL (1) |
46
-|CARD4|BL (2) |
47
-|BRAF|BL (2) |
48
-|SBF1|BL (2) |
49
-|MYH10|BL (2) |
50
-|SHANK1|BL (2) |
51
-|GRIK5|BL (2) |
52
-|SALL3|BL (2) |
53
-|SAPS2|BL (2) |
54
-|NBEAL1|BL (2) |
55
-|CDH17|BL (2) |
56
-|CDC73|BL (2) |
57
-|COL4A2|BL (2) |
58
-|GGTLA4|BL (2) |
59
-|SLC29A2|BL (2) |
60
-|BCL6|BL (2) |
61
-|GNA13|BL (1) |
62
-|ACAD9|BL (2) |
63
-|PTEN|BL (1) |
64
-|BTG2|BL (2) |
65
-|KIFC3|BL (2) |
66
-|ITPR3|BL (2) |
67
-|ACE|BL (2) |
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[ACAD9](ACAD9)|2 |
10
+|[ACE](ACE)|2 |
11
+|[ARID1A](ARID1A)|1 |
12
+|[ATP2C2](ATP2C2)|2 |
13
+|[BCL6](BCL6)|2 |
14
+|[BRAF](BRAF)|2 |
15
+|[BRD4](BRD4)|2 |
16
+|[BTG2](BTG2)|2 |
17
+|[C6orf27](C6orf27)|2 |
18
+|[CAD](CAD)|2 |
19
+|[CARD4](CARD4)|2 |
20
+|[CCT6B](CCT6B)|2 |
21
+|[CDC73](CDC73)|2 |
22
+|[CDH17](CDH17)|2 |
23
+|[COL4A2](COL4A2)|2 |
24
+|[CREBBP](CREBBP)|2 |
25
+|[CYB5D1](CYB5D1)|2 |
26
+|[CYP4F22](CYP4F22)|2 |
27
+|[DLGAP1](DLGAP1)|2 |
28
+|[EIF2C4](EIF2C4)|2 |
29
+|[EML2](EML2)|2 |
30
+|[ENTPD3](ENTPD3)|2 |
31
+|[EPHB2](EPHB2)|2 |
32
+|[EZH2](EZH2)|2 |
33
+|[FAM129B](FAM129B)|2 |
34
+|[FGFR3](FGFR3)|2 |
35
+|[FTCD](FTCD)|2 |
36
+|[GGTLA4](GGTLA4)|2 |
37
+|[GNA13](GNA13)|1 |
38
+|[GRIK5](GRIK5)|2 |
39
+|[ICK](ICK)|2 |
40
+|[ITPR3](ITPR3)|2 |
41
+|[KIFC3](KIFC3)|2 |
42
+|[MAP3K6](MAP3K6)|2 |
43
+|[MYH10](MYH10)|2 |
44
+|[NBEAL1](NBEAL1)|2 |
45
+|[NOTCH1](NOTCH1)|2 |
46
+|[NRXN2](NRXN2)|2 |
47
+|[P2RY2](P2RY2)|2 |
48
+|[PC](PC)|2 |
49
+|[POLRMT](POLRMT)|2 |
50
+|[POR](POR)|2 |
51
+|[PRSS22](PRSS22)|2 |
52
+|[PTEN](PTEN)|1 |
53
+|[PTPRN](PTPRN)|2 |
54
+|[RANBP6](RANBP6)|2 |
55
+|[RBP3](RBP3)|2 |
56
+|[RET](RET)|2 |
57
+|[SALL3](SALL3)|2 |
58
+|[SAPS2](SAPS2)|2 |
59
+|[SBF1](SBF1)|2 |
60
+|[SF3B1](SF3B1)|2 |
61
+|[SHANK1](SHANK1)|2 |
62
+|[SLC29A2](SLC29A2)|2 |
63
+|[SYNGAP1](SYNGAP1)|2 |
64
+|[TBC1D9B](TBC1D9B)|2 |
65
+|[TIGD6](TIGD6)|2 |
66
+|[TPST2](TPST2)|2 |
67
+|[ZNF229](ZNF229)|2 |
68 68
69 69
# References
70 70
mansouriFrequentNFKBIEDeletions2016.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @mansouriFrequentNFKBIEDeletions2016
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|NFKBIE|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[NFKBIE](NFKBIE)|1 |
10 10
11 11
# References
12 12
mareschalWholeExomeSequencing2016.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @mareschalWholeExomeSequencing2016
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|XPO1|DLBCL|
10
-|TBL1XR1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[TBL1XR1](TBL1XR1)|1 |
10
+|[XPO1](XPO1)|1 |
11 11
12 12
# References
13 13
mottokGenomicAlterationsCIITA2015b.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @mottokGenomicAlterationsCIITA2015b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CIITA|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[CIITA](CIITA)|1 |
10 10
11 11
# References
12 12
mottokIntegrativeGenomicAnalysis2019b.md
... ...
@@ -4,29 +4,29 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @mottokIntegrativeGenomicAnalysis2019b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|DDX3X|PMBL|
10
-|EZH2|PMBL|
11
-|HIST1H4J|PMBL|
12
-|JAK1|PMBL|
13
-|CISH|PMBL|
14
-|CXCR5|PMBL|
15
-|IRF2BP2|PMBL|
16
-|IL13RA1|PMBL|
17
-|HIST1H2BC|PMBL|
18
-|VMP1|PMBL|
19
-|IRF8|PMBL|
20
-|MAGEC2|PMBL|
21
-|IRF4|PMBL|
22
-|HIST1H4E|PMBL|
23
-|NFKB2|PMBL|
24
-|RGS1|PMBL|
25
-|MS4A1|PMBL|
26
-|JUNB|PMBL|
27
-|EPHA7|PMBL|
28
-|GCSAM|PMBL|
29
-|IL1RAPL2|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[CISH](CISH)|1 |
10
+|[CXCR5](CXCR5)|2 |
11
+|[DDX3X](DDX3X)|1 |
12
+|[EPHA7](EPHA7)|2 |
13
+|[EZH2](EZH2)|1 |
14
+|[GCSAM](GCSAM)|2 |
15
+|[HIST1H2BC](HIST1H2BC)|2 |
16
+|[HIST1H4E](HIST1H4E)|2 |
17
+|[HIST1H4J](HIST1H4J)|2 |
18
+|[IL13RA1](IL13RA1)|2 |
19
+|[IL1RAPL2](IL1RAPL2)|2 |
20
+|[IRF2BP2](IRF2BP2)|2 |
21
+|[IRF4](IRF4)|2 |
22
+|[IRF8](IRF8)|1 |
23
+|[JAK1](JAK1)|1 |
24
+|[JUNB](JUNB)|2 |
25
+|[MAGEC2](MAGEC2)|2 |
26
+|[MS4A1](MS4A1)|1 |
27
+|[NFKB2](NFKB2)|2 |
28
+|[RGS1](RGS1)|2 |
29
+|[VMP1](VMP1)|2 |
30 30
31 31
# References
32 32
muppidiLossSignalingGa132014b.md
... ...
@@ -4,11 +4,11 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @muppidiLossSignalingGa132014b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ARHGEF1|BL|
10
-|S1PR2|BL|
11
-|P2RY8|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[ARHGEF1](ARHGEF1)|2 |
10
+|[P2RY8](P2RY8)|1 |
11
+|[S1PR2](S1PR2)|2 |
12 12
13 13
# References
14 14
nadeuGenomicEpigenomicInsights2020b.md
... ...
@@ -4,13 +4,13 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @nadeuGenomicEpigenomicInsights2020b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|SMARCB1|MCL|
10
-|TERT|MCL|
11
-|BCOR|MCL|
12
-|SMARCA4|MCL|
13
-|SYNE1|MCL|
7
+|New gene|MCL tier|
8
+|:-|:-:|
9
+|[BCOR](BCOR)|2 |
10
+|[SMARCA4](SMARCA4)|1 |
11
+|[SMARCB1](SMARCB1)|2 |
12
+|[SYNE1](SYNE1)|1 |
13
+|[TERT](TERT)|1 |
14 14
15 15
# References
16 16
ngoOncogenicallyActiveMYD882011a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @ngoOncogenicallyActiveMYD882011a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MYD88|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[MYD88](MYD88)|1 |
10 10
11 11
# References
12 12
ohgamiSTAT3MutationsAre2014.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @ohgamiSTAT3MutationsAre2014
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|STAT3|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[STAT3](STAT3)|1 |
10 10
11 11
# References
12 12
okosunRecurrentMTORC1activatingRRAGC2016a.md
... ...
@@ -4,11 +4,11 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @okosunRecurrentMTORC1activatingRRAGC2016a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ATP6V1B2|FL|
10
-|RRAGC|DLBCL|
11
-|ATP6AP1|FL|
7
+|New gene|FL tier|DLBCL tier|
8
+|:-|:-:|:-:|
9
+|[ATP6AP1](ATP6AP1)|1 | |
10
+|[ATP6V1B2](ATP6V1B2)|1 | |
11
+|[RRAGC](RRAGC)|1 |1 |
12 12
13 13
# References
14 14
oricchioGeneticEpigeneticInactivation2017b.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @oricchioGeneticEpigeneticInactivation2017b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|SESN1|FL|
7
+|New gene|FL tier|
8
+|:-|:-:|
9
+|[SESN1](SESN1)|2 |
10 10
11 11
# References
12 12
ottoGeneticLesionsTRAF32012a.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @ottoGeneticLesionsTRAF32012a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TRAF3|PMBL|
10
-|MAP3K14|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[MAP3K14](MAP3K14)|1 |
10
+|[TRAF3](TRAF3)|1 |
11 11
12 12
# References
13 13
paneaWholeGenomeLandscape2019.md
... ...
@@ -4,58 +4,58 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @paneaWholeGenomeLandscape2019
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|HIST1H1C|BL|
10
-|IGLL5|BL|
11
-|CARD11|BL|
12
-|GRB2|BL|
13
-|CD79B|BL|
14
-|EIF4A1|BL|
15
-|PLCG2|BL|
16
-|EPPK1|BL|
17
-|WDR7|BL|
18
-|FZD3|BL|
19
-|HIST1H4J|BL|
20
-|IKZF3|BL|
21
-|MTOR|BL|
22
-|ZFP36L1|BL|
23
-|LTB|BL|
24
-|CTCF|BL|
25
-|HIST1H3J|BL|
26
-|HIST1H3H|BL|
27
-|WNK2|BL|
28
-|ETS1|BL|
29
-|RAC2|BL|
30
-|PABPC4L|BL|
31
-|BMP7|BL|
32
-|SYNCRIP|BL|
33
-|RNF144B|BL|
34
-|HNRNPU|BL|
35
-|HIST1H3I|BL|
36
-|HIST1H2BK|BL|
37
-|IRF8|BL|
38
-|KCNK10|BL|
39
-|SP3|BL|
40
-|ALPK2|BL|
41
-|MCL1|BL|
42
-|KLHL6|BL|
43
-|PIK3R1|BL|
44
-|HIST1H3D|BL|
45
-|EP300|BL|
46
-|HIST1H2AM|BL|
47
-|MME|BL|
48
-|DTX1|BL|
49
-|HIST1H2AG|BL|
50
-|CXCR4|BL|
51
-|TET2|BL|
52
-|PCDHA11|BL|
53
-|NOTCH2|BL|
54
-|PXDNL|BL|
55
-|SNTB2|BL|
56
-|DNMT1|BL|
57
-|CD83|BL|
58
-|PDZRN3|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[ALPK2](ALPK2)|2 |
10
+|[BMP7](BMP7)|1 |
11
+|[CARD11](CARD11)|2 |
12
+|[CD79B](CD79B)|2 |
13
+|[CD83](CD83)|2 |
14
+|[CTCF](CTCF)|2 |
15
+|[CXCR4](CXCR4)|2 |
16
+|[DNMT1](DNMT1)|2 |
17
+|[DTX1](DTX1)|2 |
18
+|[EIF4A1](EIF4A1)|1 |
19
+|[EP300](EP300)|2 |
20
+|[EPPK1](EPPK1)|1 |
21
+|[ETS1](ETS1)|2 |
22
+|[FZD3](FZD3)|2 |
23
+|[GRB2](GRB2)|2 |
24
+|[HIST1H1C](HIST1H1C)|2 |
25
+|[HIST1H2AG](HIST1H2AG)|2 |
26
+|[HIST1H2AM](HIST1H2AM)|2 |
27
+|[HIST1H2BK](HIST1H2BK)|2 |
28
+|[HIST1H3D](HIST1H3D)|2 |
29
+|[HIST1H3H](HIST1H3H)|2 |
30
+|[HIST1H3I](HIST1H3I)|2 |
31
+|[HIST1H3J](HIST1H3J)|2 |
32
+|[HIST1H4J](HIST1H4J)|2 |
33
+|[HNRNPU](HNRNPU)|1 |
34
+|[IGLL5](IGLL5)|2 |
35
+|[IKZF3](IKZF3)|2 |
36
+|[IRF8](IRF8)|2 |
37
+|[KCNK10](KCNK10)|2 |
38
+|[KLHL6](KLHL6)|2 |
39
+|[LTB](LTB)|2 |
40
+|[MCL1](MCL1)|2 |
41
+|[MME](MME)|2 |
42
+|[MTOR](MTOR)|2 |
43
+|[NOTCH2](NOTCH2)|2 |
44
+|[PABPC4L](PABPC4L)|2 |
45
+|[PCDHA11](PCDHA11)|2 |
46
+|[PDZRN3](PDZRN3)|2 |
47
+|[PIK3R1](PIK3R1)|2 |
48
+|[PLCG2](PLCG2)|2 |
49
+|[PXDNL](PXDNL)|2 |
50
+|[RAC2](RAC2)|2 |
51
+|[RNF144B](RNF144B)|2 |
52
+|[SNTB2](SNTB2)|2 |
53
+|[SP3](SP3)|2 |
54
+|[SYNCRIP](SYNCRIP)|2 |
55
+|[TET2](TET2)|2 |
56
+|[WDR7](WDR7)|2 |
57
+|[WNK2](WNK2)|2 |
58
+|[ZFP36L1](ZFP36L1)|2 |
59 59
60 60
# References
61 61
pararajalingamCodingNoncodingDrivers2020.md
... ...
@@ -4,15 +4,15 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @pararajalingamCodingNoncodingDrivers2020
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|S1PR1|MCL|
10
-|UBR5|MCL|
11
-|B2M|MCL|
12
-|HNRNPH1|MCL,DLBCL|
13
-|DAZAP1|DLBCL,MCL|
14
-|NFKBIE|MCL|
15
-|EWSR1|MCL|
7
+|New gene|DLBCL tier|MCL tier|
8
+|:-|:-:|:-:|
9
+|[B2M](B2M)|1 |2 |
10
+|[DAZAP1](DAZAP1)|2 |1 |
11
+|[EWSR1](EWSR1)| |1 |
12
+|[HNRNPH1](HNRNPH1)|2 |1 |
13
+|[NFKBIE](NFKBIE)|1 |1 |
14
+|[S1PR1](S1PR1)| |1 |
15
+|[UBR5](UBR5)|2 |1 |
16 16
17 17
# References
18 18
parryWholeExomeSequencing2013.md
... ...
@@ -4,16 +4,16 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @parryWholeExomeSequencing2013
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|FAT4|MZL|
10
-|AMOTL1|MZL|
11
-|FBXO11|MZL|
12
-|PLA2G4D|MZL|
13
-|TRRAP|DLBCL|
14
-|CBFA2T3|MZL|
15
-|USH2A|MZL|
16
-|CREBBP|MZL|
7
+|New gene|MZL tier|DLBCL tier|
8
+|:-|:-:|:-:|
9
+|[AMOTL1](AMOTL1)|2 | |
10
+|[CBFA2T3](CBFA2T3)|2 | |
11
+|[CREBBP](CREBBP)|2 |1 |
12
+|[FAT4](FAT4)|2 |2 |
13
+|[FBXO11](FBXO11)|2 |1 |
14
+|[PLA2G4D](PLA2G4D)|2 | |
15
+|[TRRAP](TRRAP)|2 |1 |
16
+|[USH2A](USH2A)|2 | |
17 17
18 18
# References
19 19
pasqualucciAnalysisCodingGenome2011.md
... ...
@@ -4,15 +4,15 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @pasqualucciAnalysisCodingGenome2011
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|HNF1B|DLBCL|
10
-|NOTCH1|DLBCL|
11
-|KLF2|DLBCL|
12
-|TRAF3|DLBCL|
13
-|MYOM2|DLBCL|
14
-|GRB2|DLBCL|
15
-|CD36|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[CD36](CD36)|2 |
10
+|[GRB2](GRB2)|1 |
11
+|[HNF1B](HNF1B)|2 |
12
+|[KLF2](KLF2)|1 |
13
+|[MYOM2](MYOM2)|2 |
14
+|[NOTCH1](NOTCH1)|1 |
15
+|[TRAF3](TRAF3)|2 |
16 16
17 17
# References
18 18
pasqualucciHypermutationMultipleProtooncogenes2001a.md
... ...
@@ -4,12 +4,12 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @pasqualucciHypermutationMultipleProtooncogenes2001a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|RHOH|DLBCL|
10
-|PAX5|DLBCL|
11
-|MYC|DLBCL|
12
-|PIM1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[MYC](MYC)|1 |
10
+|[PAX5](PAX5)|2 |
11
+|[PIM1](PIM1)|1 |
12
+|[RHOH](RHOH)|2 |
13 13
14 14
# References
15 15
pasqualucciInactivatingMutationsAcetyltransferase2011a.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @pasqualucciInactivatingMutationsAcetyltransferase2011a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CREBBP|DLBCL,FL|
10
-|EP300|DLBCL,FL|
7
+|New gene|DLBCL tier|FL tier|
8
+|:-|:-:|:-:|
9
+|[CREBBP](CREBBP)|1 |1 |
10
+|[EP300](EP300)|1 |1 |
11 11
12 12
# References
13 13
pasqualucciInactivationPRDM1BLIMP12006a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @pasqualucciInactivationPRDM1BLIMP12006a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PRDM1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[PRDM1](PRDM1)|1 |
10 10
11 11
# References
12 12
reddyGeneticFunctionalDrivers2017.md
... ...
@@ -4,68 +4,68 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @reddyGeneticFunctionalDrivers2017
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MECOM|DLBCL|
10
-|BTBD3|DLBCL|
11
-|BIRC6|DLBCL|
12
-|RARA|DLBCL|
13
-|LIN54|DLBCL|
14
-|DCAF6|DLBCL|
15
-|MET|DLBCL|
16
-|MSH2|DLBCL|
17
-|SETD1B|DLBCL|
18
-|PIK3CD|DLBCL|
19
-|TGFBR2|DLBCL|
20
-|MYB|DLBCL|
21
-|YY1|DLBCL|
22
-|MCL1|DLBCL|
23
-|CBLB|DLBCL|
24
-|ARID5B|DLBCL|
25
-|DDX10|DLBCL|
26
-|CHD8|DLBCL|
27
-|ATM|DLBCL|
28
-|ATR|DLBCL|
29
-|HRAS|DLBCL|
30
-|BRINP3|DLBCL|
31
-|UBE2A|DLBCL|
32
-|PTPN6|DLBCL|
33
-|TIPARP|DLBCL|
34
-|CD22|DLBCL|
35
-|PTPRK|DLBCL|
36
-|KCMF1|DLBCL|
37
-|ARID1B|DLBCL|
38
-|HNRNPU|DLBCL|
39
-|MARK1|DLBCL|
40
-|ZFAT|DLBCL|
41
-|CASP8|DLBCL|
42
-|IKBKB|DLBCL|
43
-|ANKRD17|DLBCL|
44
-|CHD1|DLBCL|
45
-|DICER1|DLBCL|
46
-|CHST2|DLBCL|
47
-|HIST1H2BC|DLBCL|
48
-|SYK|DLBCL|
49
-|PHF6|DLBCL|
50
-|MAP4K4|DLBCL|
51
-|GNAS|DLBCL|
52
-|MAGT1|DLBCL|
53
-|NF1|DLBCL|
54
-|CDC73|DLBCL|
55
-|DNMT3A|DLBCL|
56
-|TOX|DLBCL|
57
-|MSH6|DLBCL|
58
-|GOLGA5|DLBCL|
59
-|FOXP1|DLBCL|
60
-|NCOR1|DLBCL|
61
-|ZBTB7A|DLBCL|
62
-|NFKB2|DLBCL|
63
-|WAC|DLBCL|
64
-|RUNX1|DLBCL|
65
-|ZFX|DLBCL|
66
-|FUBP1|DLBCL|
67
-|JUNB|DLBCL|
68
-|SETD5|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[ANKRD17](ANKRD17)|2 |
10
+|[ARID1B](ARID1B)|2 |
11
+|[ARID5B](ARID5B)|2 |
12
+|[ATM](ATM)|1 |
13
+|[ATR](ATR)|2 |
14
+|[BIRC6](BIRC6)|1 |
15
+|[BRINP3](BRINP3)|2 |
16
+|[BTBD3](BTBD3)|2 |
17
+|[CASP8](CASP8)|2 |
18
+|[CBLB](CBLB)|2 |
19
+|[CD22](CD22)|2 |
20
+|[CDC73](CDC73)|2 |
21
+|[CHD1](CHD1)|2 |
22
+|[CHD8](CHD8)|2 |
23
+|[CHST2](CHST2)|2 |
24
+|[DCAF6](DCAF6)|2 |
25
+|[DDX10](DDX10)|2 |
26
+|[DICER1](DICER1)|2 |
27
+|[DNMT3A](DNMT3A)|2 |
28
+|[FOXP1](FOXP1)|2 |
29
+|[FUBP1](FUBP1)|2 |
30
+|[GNAS](GNAS)|2 |
31
+|[GOLGA5](GOLGA5)|2 |
32
+|[HIST1H2BC](HIST1H2BC)|1 |
33
+|[HNRNPU](HNRNPU)|1 |
34
+|[HRAS](HRAS)|2 |
35
+|[IKBKB](IKBKB)|2 |
36
+|[JUNB](JUNB)|2 |
37
+|[KCMF1](KCMF1)|2 |
38
+|[LIN54](LIN54)|2 |
39
+|[MAGT1](MAGT1)|2 |
40
+|[MAP4K4](MAP4K4)|2 |
41
+|[MARK1](MARK1)|2 |
42
+|[MCL1](MCL1)|2 |
43
+|[MECOM](MECOM)|2 |
44
+|[MET](MET)|2 |
45
+|[MSH2](MSH2)|2 |
46
+|[MSH6](MSH6)|2 |
47
+|[MYB](MYB)|2 |
48
+|[NCOR1](NCOR1)|2 |
49
+|[NF1](NF1)|2 |
50
+|[NFKB2](NFKB2)|2 |
51
+|[PHF6](PHF6)|2 |
52
+|[PIK3CD](PIK3CD)|2 |
53
+|[PTPN6](PTPN6)|2 |
54
+|[PTPRK](PTPRK)|2 |
55
+|[RARA](RARA)|2 |
56
+|[RUNX1](RUNX1)|2 |
57
+|[SETD1B](SETD1B)|1 |
58
+|[SETD5](SETD5)|2 |
59
+|[SYK](SYK)|2 |
60
+|[TGFBR2](TGFBR2)|2 |
61
+|[TIPARP](TIPARP)|2 |
62
+|[TOX](TOX)|1 |
63
+|[UBE2A](UBE2A)|1 |
64
+|[WAC](WAC)|2 |
65
+|[YY1](YY1)|2 |
66
+|[ZBTB7A](ZBTB7A)|2 |
67
+|[ZFAT](ZFAT)|2 |
68
+|[ZFX](ZFX)|2 |
69 69
70 70
# References
71 71
reichelFlowSortingExome2015a.md
... ...
@@ -4,37 +4,37 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @reichelFlowSortingExome2015a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|WEE1|PMBL|
10
-|TBC1D15|PMBL|
11
-|UBE2A|PMBL|
12
-|MPDZ|PMBL|
13
-|CSF2RB|PMBL|
14
-|B2M|PMBL|
15
-|DMD|PMBL|
16
-|HIST1H4C|PMBL|
17
-|HECW2|PMBL|
18
-|TRIP11|PMBL|
19
-|EGR1|PMBL|
20
-|SETDB1|PMBL|
21
-|PIM2|PMBL|
22
-|HIST1H1E|PMBL|
23
-|HIST1H3B|PMBL|
24
-|SIAH2|PMBL|
25
-|ZFP36L1|PMBL|
26
-|GNA13|PMBL|
27
-|BCL7A|PMBL|
28
-|TICRR|PMBL|
29
-|EEF1A1|PMBL|
30
-|SENP7|PMBL|
31
-|RANBP2|PMBL|
32
-|HELLS|PMBL|
33
-|ZNF217|PMBL|
34
-|ITPKB|PMBL|
35
-|NEK1|PMBL|
36
-|EBF1|PMBL|
37
-|ARIH2|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[ARIH2](ARIH2)|2 |
10
+|[B2M](B2M)|1 |
11
+|[BCL7A](BCL7A)|2 |
12
+|[CSF2RB](CSF2RB)|1 |
13
+|[DMD](DMD)|2 |
14
+|[EBF1](EBF1)|1 |
15
+|[EEF1A1](EEF1A1)|1 |
16
+|[EGR1](EGR1)|2 |
17
+|[GNA13](GNA13)|1 |
18
+|[HECW2](HECW2)|2 |
19
+|[HELLS](HELLS)|2 |
20
+|[HIST1H1E](HIST1H1E)|1 |
21
+|[HIST1H3B](HIST1H3B)|2 |
22
+|[HIST1H4C](HIST1H4C)|2 |
23
+|[ITPKB](ITPKB)|1 |
24
+|[MPDZ](MPDZ)|2 |
25
+|[NEK1](NEK1)|2 |
26
+|[PIM2](PIM2)|1 |
27
+|[RANBP2](RANBP2)|2 |
28
+|[SENP7](SENP7)|2 |
29
+|[SETDB1](SETDB1)|2 |
30
+|[SIAH2](SIAH2)|2 |
31
+|[TBC1D15](TBC1D15)|2 |
32
+|[TICRR](TICRR)|2 |
33
+|[TRIP11](TRIP11)|2 |
34
+|[UBE2A](UBE2A)|1 |
35
+|[WEE1](WEE1)|1 |
36
+|[ZFP36L1](ZFP36L1)|1 |
37
+|[ZNF217](ZNF217)|2 |
38 38
39 39
# References
40 40
richterRecurrentMutationID32012a.md
... ...
@@ -4,13 +4,13 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @richterRecurrentMutationID32012a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ID3|BL|
10
-|CCND3|BL|
11
-|SMARCA4|BL|
12
-|FBXO11|BL|
13
-|RHOA|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[CCND3](CCND3)|1 |
10
+|[FBXO11](FBXO11)|1 |
11
+|[ID3](ID3)|1 |
12
+|[RHOA](RHOA)|1 |
13
+|[SMARCA4](SMARCA4)|1 |
14 14
15 15
# References
16 16
ritzRecurrentMutationsSTAT62009a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @ritzRecurrentMutationsSTAT62009a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|STAT6|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[STAT6](STAT6)|1 |
10 10
11 11
# References
12 12
rossiAlterationBIRC3Multiple2011a.md
... ...
@@ -4,13 +4,13 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @rossiAlterationBIRC3Multiple2011a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TNFAIP3|MZL|
10
-|IKBKB|MZL|
11
-|MAP3K14|MZL|
12
-|TRAF3|MZL|
13
-|BIRC3|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[BIRC3](BIRC3)|1 |
10
+|[IKBKB](IKBKB)|2 |
11
+|[MAP3K14](MAP3K14)|1 |
12
+|[TNFAIP3](TNFAIP3)|1 |
13
+|[TRAF3](TRAF3)|1 |
14 14
15 15
# References
16 16
rossiCodingGenomeSplenic2012c.md
... ...
@@ -4,29 +4,29 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @rossiCodingGenomeSplenic2012c
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|NOTCH2|MZL|
10
-|CD79A|MZL|
11
-|TBL1XR1|MZL|
12
-|ARID1A|MZL|
13
-|EGR1|MZL|
14
-|KMT2D|MZL|
15
-|SIN3A|MZL|
16
-|EP300|MZL|
17
-|DTX1|MZL|
18
-|EGR2|MZL|
19
-|HIST1H2AG|MZL|
20
-|TRRAP|MZL|
21
-|HIST1H2BK|MZL|
22
-|SWAP70|MZL|
23
-|MSL2|MZL|
24
-|SPEN|DLBCL,MZL|
25
-|GPS2|MZL|
26
-|MCRS1|MZL|
27
-|TP53|MZL|
28
-|NOTCH1|MZL|
29
-|WAC|MZL|
7
+|New gene|DLBCL tier|MZL tier|
8
+|:-|:-:|:-:|
9
+|[ARID1A](ARID1A)|1 |1 |
10
+|[CD79A](CD79A)| |2 |
11
+|[DTX1](DTX1)|1 |1 |
12
+|[EGR1](EGR1)| |2 |
13
+|[EGR2](EGR2)| |2 |
14
+|[EP300](EP300)|1 |1 |
15
+|[GPS2](GPS2)| |2 |
16
+|[HIST1H2AG](HIST1H2AG)|2 |2 |
17
+|[HIST1H2BK](HIST1H2BK)|1 |2 |
18
+|[KMT2D](KMT2D)|1 |1 |
19
+|[MCRS1](MCRS1)| |2 |
20
+|[MSL2](MSL2)| |2 |
21
+|[NOTCH1](NOTCH1)|1 |1 |
22
+|[NOTCH2](NOTCH2)|1 |1 |
23
+|[SIN3A](SIN3A)|1 |1 |
24
+|[SPEN](SPEN)|1 |1 |
25
+|[SWAP70](SWAP70)| |2 |
26
+|[TBL1XR1](TBL1XR1)|1 |1 |
27
+|[TP53](TP53)|1 |1 |
28
+|[TRRAP](TRRAP)|1 |2 |
29
+|[WAC](WAC)|2 |2 |
30 30
31 31
# References
32 32
rushtonGeneticEvolutionaryPatterns2020.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @rushtonGeneticEvolutionaryPatterns2020
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MS4A1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[MS4A1](MS4A1)|1 |
10 10
11 11
# References
12 12
russler-germainMutationsAssociatedProgression2023b.md
... ...
@@ -4,28 +4,28 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @russler-germainMutationsAssociatedProgression2023b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PZP|FL|
10
-|BCL10|FL|
11
-|CYP2A6|FL|
12
-|XIRP2|FL|
13
-|CD83|FL|
14
-|KIR3DL1|FL|
15
-|MAGEC1|FL|
16
-|CILP|FL|
17
-|GBP7|FL|
18
-|GRM6|FL|
19
-|OR8H2|FL|
20
-|SRRM2|FL|
21
-|STAB2|FL|
22
-|MAP7D1|FL|
23
-|MKI67|FL|
24
-|ABL2|FL|
25
-|NFKBIA|FL|
26
-|IGLL5|FL|
27
-|SHROOM3|FL|
28
-|CD70|FL|
7
+|New gene|FL tier|
8
+|:-|:-:|
9
+|[ABL2](ABL2)|2 |
10
+|[BCL10](BCL10)|2 |
11
+|[CD70](CD70)|2 |
12
+|[CD83](CD83)|1 |
13
+|[CILP](CILP)|2 |
14
+|[CYP2A6](CYP2A6)|2 |
15
+|[GBP7](GBP7)|2 |
16
+|[GRM6](GRM6)|2 |
17
+|[IGLL5](IGLL5)|2 |
18
+|[KIR3DL1](KIR3DL1)|2 |
19
+|[MAGEC1](MAGEC1)|2 |
20
+|[MAP7D1](MAP7D1)|2 |
21
+|[MKI67](MKI67)|2 |
22
+|[NFKBIA](NFKBIA)|2 |
23
+|[OR8H2](OR8H2)|2 |
24
+|[PZP](PZP)|2 |
25
+|[SHROOM3](SHROOM3)|2 |
26
+|[SRRM2](SRRM2)|2 |
27
+|[STAB2](STAB2)|2 |
28
+|[XIRP2](XIRP2)|2 |
29 29
30 30
# References
31 31
sarkozyMutationalLandscapeGray2021a.md
... ...
@@ -4,19 +4,19 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @sarkozyMutationalLandscapeGray2021a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|SPEN|PMBL|
10
-|BCL2|PMBL|
11
-|BTG1|PMBL|
12
-|RELN|PMBL|
13
-|MFHAS1|PMBL|
14
-|LRRN3|PMBL|
15
-|ABCA13|PMBL|
16
-|BIRC6|PMBL|
17
-|HIST1H1B|PMBL|
18
-|KMT2C|PMBL|
19
-|NCOR2|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[ABCA13](ABCA13)|2 |
10
+|[BCL2](BCL2)|2 |
11
+|[BIRC6](BIRC6)|1 |
12
+|[BTG1](BTG1)|1 |
13
+|[HIST1H1B](HIST1H1B)|1 |
14
+|[KMT2C](KMT2C)|1 |
15
+|[LRRN3](LRRN3)|2 |
16
+|[MFHAS1](MFHAS1)|2 |
17
+|[NCOR2](NCOR2)|2 |
18
+|[RELN](RELN)|2 |
19
+|[SPEN](SPEN)|1 |
20 20
21 21
# References
22 22
schmitzBurkittLymphomaPathogenesis2012.md
... ...
@@ -4,28 +4,28 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @schmitzBurkittLymphomaPathogenesis2012
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|KANK2|BL|
10
-|YY1AP1|BL|
11
-|DHCR7|BL|
12
-|GTSE1|BL|
13
-|WHAMM|BL|
14
-|PCBP1|BL|
15
-|ELP2|BL|
16
-|FOXO1|BL|
17
-|FLYWCH1|BL|
18
-|MKI67|BL|
19
-|EXOSC6|BL|
20
-|TCF3|BL|
21
-|MYO18A|BL|
22
-|WDR90|BL|
23
-|NCOR2|BL|
24
-|C16orf48|BL|
25
-|DDX3X|BL|
26
-|PDCD11|BL|
27
-|TOP2A|BL|
28
-|ID3|DLBCL|
7
+|New gene|DLBCL tier|BL tier|
8
+|:-|:-:|:-:|
9
+|[C16orf48](C16orf48)| |2 |
10
+|[DDX3X](DDX3X)|1 |1 |
11
+|[DHCR7](DHCR7)| |2 |
12
+|[ELP2](ELP2)| |2 |
13
+|[EXOSC6](EXOSC6)| |2 |
14
+|[FLYWCH1](FLYWCH1)| |2 |
15
+|[FOXO1](FOXO1)|1 |1 |
16
+|[GTSE1](GTSE1)| |2 |
17
+|[ID3](ID3)|2 |1 |
18
+|[KANK2](KANK2)| |2 |
19
+|[MKI67](MKI67)| |2 |
20
+|[MYO18A](MYO18A)| |2 |
21
+|[NCOR2](NCOR2)|2 |2 |
22
+|[PCBP1](PCBP1)|2 |2 |
23
+|[PDCD11](PDCD11)| |2 |
24
+|[TCF3](TCF3)| |1 |
25
+|[TOP2A](TOP2A)| |2 |
26
+|[WDR90](WDR90)| |2 |
27
+|[WHAMM](WHAMM)| |2 |
28
+|[YY1AP1](YY1AP1)| |2 |
29 29
30 30
# References
31 31
schmitzGeneticsPathogenesisDiffuse2018a.md
... ...
@@ -4,24 +4,24 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @schmitzGeneticsPathogenesisDiffuse2018a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MYBPC2|DLBCL|
10
-|GPC5|DLBCL|
11
-|DTX1|DLBCL|
12
-|WEE1|DLBCL|
13
-|FOXC1|DLBCL|
14
-|TAP1|DLBCL|
15
-|ITPKB|DLBCL|
16
-|PRKDC|DLBCL|
17
-|KLHL21|DLBCL|
18
-|GSG2|DLBCL|
19
-|LAMA5|DLBCL|
20
-|NOL9|DLBCL|
21
-|CXCR5|DLBCL|
22
-|PAPOLG|DLBCL|
23
-|DDX3X|DLBCL|
24
-|HIST2H2BE|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[CXCR5](CXCR5)|1 |
10
+|[DDX3X](DDX3X)|1 |
11
+|[DTX1](DTX1)|1 |
12
+|[FOXC1](FOXC1)|2 |
13
+|[GPC5](GPC5)|2 |
14
+|[GSG2](GSG2)|2 |
15
+|[HIST2H2BE](HIST2H2BE)|1 |
16
+|[ITPKB](ITPKB)|1 |
17
+|[KLHL21](KLHL21)|2 |
18
+|[LAMA5](LAMA5)|2 |
19
+|[MYBPC2](MYBPC2)|2 |
20
+|[NOL9](NOL9)|1 |
21
+|[PAPOLG](PAPOLG)|2 |
22
+|[PRKDC](PRKDC)|2 |
23
+|[TAP1](TAP1)|2 |
24
+|[WEE1](WEE1)|1 |
25 25
26 26
# References
27 27
schmitzTNFAIP3A20Tumor2009a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @schmitzTNFAIP3A20Tumor2009a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TNFAIP3|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[TNFAIP3](TNFAIP3)|1 |
10 10
11 11
# References
12 12
schneiderAlterationsCD58Gene2015a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @schneiderAlterationsCD58Gene2015a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CD58|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[CD58](CD58)|1 |
10 10
11 11
# References
12 12
schollMutationsRegionFAS2007.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @schollMutationsRegionFAS2007
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|FAS|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[FAS](FAS)|1 |
10 10
11 11
# References
12 12
shinBRAFV600EMAP2K12015.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @shinBRAFV600EMAP2K12015
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MAP2K1|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[MAP2K1](MAP2K1)|2 |
10 10
11 11
# References
12 12
spinaGeneticsNodalMarginal2016b.md
... ...
@@ -4,39 +4,39 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @spinaGeneticsNodalMarginal2016b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PTPRD|MZL|
10
-|RPL1L|MZL|
11
-|GPR98|MZL|
12
-|FAS|MZL|
13
-|RCOR1|MZL|
14
-|SAMD5|MZL|
15
-|TNFRSF14|MZL|
16
-|LRP1B|MZL|
17
-|BCL10|MZL|
18
-|STXBP5|MZL|
19
-|TCTN2|MZL|
20
-|TAF1|MZL|
21
-|ZNF9|MZL|
22
-|AMN|MZL|
23
-|CLGN|MZL|
24
-|SCG3|MZL|
25
-|AOC2|MZL|
26
-|NOL9|MZL|
27
-|CDKN2A|MZL|
28
-|NCOR2|MZL|
29
-|C6orf103|MZL|
30
-|ABCA13|MZL|
31
-|ID3|MZL|
32
-|ADD2|MZL|
33
-|PARK2|MZL|
34
-|PACRG|MZL|
35
-|CNKSR2|MZL|
36
-|ACTG1|MZL|
37
-|PLXNB3|MZL|
38
-|CDC42BPB|MZL|
39
-|FAT1|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[ABCA13](ABCA13)|2 |
10
+|[ACTG1](ACTG1)|2 |
11
+|[ADD2](ADD2)|2 |
12
+|[AMN](AMN)|2 |
13
+|[AOC2](AOC2)|2 |
14
+|[BCL10](BCL10)|1 |
15
+|[C6orf103](C6orf103)|2 |
16
+|[CDC42BPB](CDC42BPB)|2 |
17
+|[CDKN2A](CDKN2A)|2 |
18
+|[CLGN](CLGN)|2 |
19
+|[CNKSR2](CNKSR2)|2 |
20
+|[FAS](FAS)|1 |
21
+|[FAT1](FAT1)|1 |
22
+|[GPR98](GPR98)|2 |
23
+|[ID3](ID3)|1 |
24
+|[LRP1B](LRP1B)|2 |
25
+|[NCOR2](NCOR2)|1 |
26
+|[NOL9](NOL9)|1 |
27
+|[PACRG](PACRG)|2 |
28
+|[PARK2](PARK2)|2 |
29
+|[PLXNB3](PLXNB3)|2 |
30
+|[PTPRD](PTPRD)|1 |
31
+|[RCOR1](RCOR1)|2 |
32
+|[RPL1L](RPL1L)|2 |
33
+|[SAMD5](SAMD5)|2 |
34
+|[SCG3](SCG3)|2 |
35
+|[STXBP5](STXBP5)|2 |
36
+|[TAF1](TAF1)|2 |
37
+|[TCTN2](TCTN2)|2 |
38
+|[TNFRSF14](TNFRSF14)|1 |
39
+|[ZNF9](ZNF9)|2 |
40 40
41 41
# References
42 42
thomasGeneticSubgroupsInform2023.md
... ...
@@ -4,13 +4,13 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @thomasGeneticSubgroupsInform2023
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|EHD1|BL|
10
-|WNK1|BL|
11
-|EBF1|BL|
12
-|CDKN2C|BL|
13
-|PHF6|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[CDKN2C](CDKN2C)|2 |
10
+|[EBF1](EBF1)|2 |
11
+|[EHD1](EHD1)|2 |
12
+|[PHF6](PHF6)|1 |
13
+|[WNK1](WNK1)|1 |
14 14
15 15
# References
16 16
tiacciBRAFMutationsHairycell2011a.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @tiacciBRAFMutationsHairycell2011a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|BRAF|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[BRAF](BRAF)|1 |
10 10
11 11
# References
12 12
tiacciPervasiveMutationsJAKSTAT2018b.md
... ...
@@ -4,18 +4,18 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @tiacciPervasiveMutationsJAKSTAT2018b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|NUP214|PMBL|
10
-|AKAP6|PMBL|
11
-|DGKB|PMBL|
12
-|TNIP1|PMBL|
13
-|TP53|PMBL|
14
-|SETD5|PMBL|
15
-|STAT5B|PMBL|
16
-|PRUNE2|PMBL|
17
-|ITPR3|PMBL|
18
-|ZCCHC11|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[AKAP6](AKAP6)|2 |
10
+|[DGKB](DGKB)|2 |
11
+|[ITPR3](ITPR3)|2 |
12
+|[NUP214](NUP214)|2 |
13
+|[PRUNE2](PRUNE2)|2 |
14
+|[SETD5](SETD5)|2 |
15
+|[STAT5B](STAT5B)|2 |
16
+|[TNIP1](TNIP1)|2 |
17
+|[TP53](TP53)|1 |
18
+|[ZCCHC11](ZCCHC11)|2 |
19 19
20 20
# References
21 21
troenNOTCH2MutationsMarginal2008.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @troenNOTCH2MutationsMarginal2008
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|NOTCH2|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[NOTCH2](NOTCH2)|1 |
10 10
11 11
# References
12 12
vandenbrandRecurrentMutationsGenes2017.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @vandenbrandRecurrentMutationsGenes2017
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TNIP2|MZL|
10
-|CD9B|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[CD9B](CD9B)|2 |
10
+|[TNIP2](TNIP2)|2 |
11 11
12 12
# References
13 13
viganoSomaticIL4RMutations2018b.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @viganoSomaticIL4RMutations2018b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|IL4R|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[IL4R](IL4R)|1 |
10 10
11 11
# References
12 12
wenigerMutationsTumorSuppressor2006a.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @wenigerMutationsTumorSuppressor2006a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|SOCS1|PMBL|
10
-|GPR126|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[GPR126](GPR126)|2 |
10
+|[SOCS1](SOCS1)|1 |
11 11
12 12
# References
13 13
wienandGenomicAnalysesFlowsorted2019b.md
... ...
@@ -4,15 +4,15 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @wienandGenomicAnalysesFlowsorted2019b
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ACTB|PMBL|
10
-|DNAH12|PMBL|
11
-|HLA-B|PMBL|
12
-|ARID1A|PMBL|
13
-|IKBKB|PMBL|
14
-|NFKBIA|PMBL|
15
-|RBM38|PMBL|
7
+|New gene|PMBL tier|
8
+|:-|:-:|
9
+|[ACTB](ACTB)|1 |
10
+|[ARID1A](ARID1A)|1 |
11
+|[DNAH12](DNAH12)|2 |
12
+|[HLA-B](HLA-B)|1 |
13
+|[IKBKB](IKBKB)|2 |
14
+|[NFKBIA](NFKBIA)|1 |
15
+|[RBM38](RBM38)|2 |
16 16
17 17
# References
18 18
wildaInactivationARFMDM2p53Pathway2004.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @wildaInactivationARFMDM2p53Pathway2004
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|TP53|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[TP53](TP53)|1 |
10 10
11 11
# References
12 12
wuGeneticHeterogeneityPrimary2016.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @wuGeneticHeterogeneityPrimary2016
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|CARD11|MCL|
7
+|New gene|MCL tier|
8
+|:-|:-:|
9
+|[CARD11](CARD11)|1 |
10 10
11 11
# References
12 12
yanBCRTLRSignaling2012a.md
... ...
@@ -4,10 +4,10 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @yanBCRTLRSignaling2012a
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|MYD88|MZL|
10
-|CARD11|MZL|
7
+|New gene|MZL tier|
8
+|:-|:-:|
9
+|[CARD11](CARD11)|1 |
10
+|[MYD88](MYD88)|1 |
11 11
12 12
# References
13 13
yildizActivatingSTAT6Mutations2015c.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @yildizActivatingSTAT6Mutations2015c
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|STAT6|DLBCL,FL|
7
+|New gene|DLBCL tier|FL tier|
8
+|:-|:-:|:-:|
9
+|[STAT6](STAT6)|1 |1 |
10 10
11 11
# References
12 12
zhangGeneticHeterogeneityDiffuse2013.md
... ...
@@ -4,27 +4,27 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @zhangGeneticHeterogeneityDiffuse2013
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|ZNF292|DLBCL|
10
-|ZNF608|DLBCL|
11
-|STAT5B|DLBCL|
12
-|FBXW7|DLBCL|
13
-|SETD2|DLBCL|
14
-|KLHL14|DLBCL|
15
-|UBR5|DLBCL|
16
-|KMT2C|DLBCL|
17
-|JAK1|DLBCL|
18
-|INO80|DLBCL|
19
-|PIK3R1|DLBCL|
20
-|MGA|DLBCL|
21
-|ARID1A|DLBCL|
22
-|JAK3|DLBCL|
23
-|ZEB2|DLBCL|
24
-|HIST1H3B|DLBCL|
25
-|POU2F2|DLBCL|
26
-|SMARCA4|DLBCL|
27
-|MTOR|DLBCL|
7
+|New gene|DLBCL tier|
8
+|:-|:-:|
9
+|[ARID1A](ARID1A)|1 |
10
+|[FBXW7](FBXW7)|1 |
11
+|[HIST1H3B](HIST1H3B)|1 |
12
+|[INO80](INO80)|2 |
13
+|[JAK1](JAK1)|2 |
14
+|[JAK3](JAK3)|2 |
15
+|[KLHL14](KLHL14)|1 |
16
+|[KMT2C](KMT2C)|1 |
17
+|[MGA](MGA)|1 |
18
+|[MTOR](MTOR)|1 |
19
+|[PIK3R1](PIK3R1)|2 |
20
+|[POU2F2](POU2F2)|1 |
21
+|[SETD2](SETD2)|2 |
22
+|[SMARCA4](SMARCA4)|1 |
23
+|[STAT5B](STAT5B)|2 |
24
+|[UBR5](UBR5)|2 |
25
+|[ZEB2](ZEB2)|2 |
26
+|[ZNF292](ZNF292)|1 |
27
+|[ZNF608](ZNF608)|1 |
28 28
29 29
# References
30 30
zhangGenomicLandscapeMantle2014.md
... ...
@@ -4,36 +4,36 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @zhangGenomicLandscapeMantle2014
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|PCDHB2|MCL|
10
-|ATP11C|MCL|
11
-|COL16A1|MCL|
12
-|FAT4|MCL|
13
-|RB1|MCL|
14
-|SMC1A|MCL|
15
-|CDH8|MCL|
16
-|PLXNB3|MCL|
17
-|ZNF296|MCL|
18
-|HEPH|MCL|
19
-|CTNNA2|MCL|
20
-|POT1|MCL|
21
-|GRIN2A|MCL|
22
-|EIF2AK4|MCL|
23
-|ROBO2|MCL|
24
-|NIN|MCL|
25
-|DLC1|MCL|
26
-|ESX1|MCL|
27
-|ZNF117|MCL|
28
-|KMT2C|MCL|
29
-|SALL3|MCL|
30
-|TBC1D26|MCL|
31
-|SI|MCL|
32
-|ANK2|MCL|
33
-|MRGPRF|MCL|
34
-|OGDHL|MCL|
35
-|COL11A1|MCL|
36
-|DHDH|MCL|
7
+|New gene|MCL tier|
8
+|:-|:-:|
9
+|[ANK2](ANK2)|2 |
10
+|[ATP11C](ATP11C)|2 |
11
+|[CDH8](CDH8)|2 |
12
+|[COL11A1](COL11A1)|2 |
13
+|[COL16A1](COL16A1)|2 |
14
+|[CTNNA2](CTNNA2)|2 |
15
+|[DHDH](DHDH)|2 |
16
+|[DLC1](DLC1)|2 |
17
+|[EIF2AK4](EIF2AK4)|2 |
18
+|[ESX1](ESX1)|2 |
19
+|[FAT4](FAT4)|2 |
20
+|[GRIN2A](GRIN2A)|2 |
21
+|[HEPH](HEPH)|2 |
22
+|[KMT2C](KMT2C)|2 |
23
+|[MRGPRF](MRGPRF)|2 |
24
+|[NIN](NIN)|2 |
25
+|[OGDHL](OGDHL)|2 |
26
+|[PCDHB2](PCDHB2)|2 |
27
+|[PLXNB3](PLXNB3)|2 |
28
+|[POT1](POT1)|1 |
29
+|[RB1](RB1)|1 |
30
+|[ROBO2](ROBO2)|2 |
31
+|[SALL3](SALL3)|2 |
32
+|[SI](SI)|2 |
33
+|[SMC1A](SMC1A)|2 |
34
+|[TBC1D26](TBC1D26)|2 |
35
+|[ZNF117](ZNF117)|2 |
36
+|[ZNF296](ZNF296)|2 |
37 37
38 38
# References
39 39
zhouSporadicEndemicBurkitt2019.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
# @zhouSporadicEndemicBurkitt2019
7
-|Gene|Entities|
8
-|:-:|:-:|
9
-|KMT2C|BL|
7
+|New gene|BL tier|
8
+|:-|:-:|
9
+|[KMT2C](KMT2C)|2 |
10 10
11 11
# References
12 12