Papers.md
... ...
@@ -4,9 +4,9 @@ bibliography: 'morinlab.bib'
4 4
---
5 5
6 6
|Year|Focus|Methodology|Novel genes| Tier 1|Example gene|Study|
7
-|:-:|:-:|:-:|:----:|:-:|:-:|:-------:|
8
-|1992|BL|Sanger|1|1|MYC|[@johnstonCmycHypermutationBurkitt1992](papers/johnstonCmycHypermutationBurkitt1992.md)|
7
+|:-:|:-:|:-:|:-:|:-:|:-:|:-------:|
9 8
|1992|DLBCL|Sanger|1|1|BCL2|[@tanakaFrequentIncidenceSomatic1992](papers/tanakaFrequentIncidenceSomatic1992.md)|
9
+|1992|BL|Sanger|1|1|MYC|[@johnstonCmycHypermutationBurkitt1992](papers/johnstonCmycHypermutationBurkitt1992.md)|
10 10
|2001|DLBCL|Sanger|4|2|MYC|[@pasqualucciHypermutationMultipleProtooncogenes2001a](papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md)|
11 11
|2004|BL|Sanger|1|1|TP53|[@wildaInactivationARFMDM2p53Pathway2004](papers/wildaInactivationARFMDM2p53Pathway2004.md)|
12 12
|2006|PMBL|Sanger|2|1|GPR126|[@wenigerMutationsTumorSuppressor2006a](papers/wenigerMutationsTumorSuppressor2006a.md)|
... ...
@@ -14,77 +14,77 @@ bibliography: 'morinlab.bib'
14 14
|2007|DLBCL|Sanger|1|1|FAS|[@schollMutationsRegionFAS2007](papers/schollMutationsRegionFAS2007.md)|
15 15
|2008|DLBCL|Sanger|1|1|CARD11|[@lenzOncogenicCARD11Mutations2008](papers/lenzOncogenicCARD11Mutations2008.md)|
16 16
|2009|PMBL|Sanger|1|1|TNFAIP3|[@schmitzTNFAIP3A20Tumor2009a](papers/schmitzTNFAIP3A20Tumor2009a.md)|
17
+|2009|DLBCL|Sanger|1|1|NFKBIA|[@lakeMutationsNFKBIAEncoding2009](papers/lakeMutationsNFKBIAEncoding2009.md)|
17 18
|2009|DLBCL|Sanger|1|1|TNFAIP3|[@compagnoMutationsMultipleGenes2009a](papers/compagnoMutationsMultipleGenes2009a.md)|
18 19
|2009|PMBL|Sanger|1|1|STAT6|[@ritzRecurrentMutationsSTAT62009a](papers/ritzRecurrentMutationsSTAT62009a.md)|
19
-|2009|DLBCL|Sanger|1|1|NFKBIA|[@lakeMutationsNFKBIAEncoding2009](papers/lakeMutationsNFKBIAEncoding2009.md)|
20
+|2010|FL|RNA-seq/WGS|1|1|EZH2|[@morinSomaticMutationsAltering2010a](papers/morinSomaticMutationsAltering2010a.md)|
20 21
|2010|FL|Sanger|1|1|TNFRSF14|[@cheungAcquiredTNFRSF14Mutations2010a](papers/cheungAcquiredTNFRSF14Mutations2010a.md)|
21
-|2010|DLBCL|RNA-seq/WGS|1|1|EZH2|[@morinSomaticMutationsAltering2010a](papers/morinSomaticMutationsAltering2010a.md)|
22
-|2011|DLBCL|RNA-seq/WGS|29|27|B2M|[@morinFrequentMutationHistonemodifying2011](papers/morinFrequentMutationHistonemodifying2011.md)|
23 22
|2011|DLBCL|exome|7|3|CD36|[@pasqualucciAnalysisCodingGenome2011](papers/pasqualucciAnalysisCodingGenome2011.md)|
24
-|2011|DLBCL|Sanger|1|1|MYD88|[@ngoOncogenicallyActiveMYD882011a](papers/ngoOncogenicallyActiveMYD882011a.md)|
23
+|2011|DLBCL|exome|2|2|CREBBP|[@pasqualucciInactivatingMutationsAcetyltransferase2011a](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md)|
24
+|2011|DLBCL|RNA-seq/WGS|29|27|B2M|[@morinFrequentMutationHistonemodifying2011](papers/morinFrequentMutationHistonemodifying2011.md)|
25 25
|2011|MZL|Sanger|5|4|BIRC3|[@rossiAlterationBIRC3Multiple2011a](papers/rossiAlterationBIRC3Multiple2011a.md)|
26 26
|2011|DLBCL|exome/Sanger|1|1|BRAF|[@tiacciBRAFMutationsHairycell2011a](papers/tiacciBRAFMutationsHairycell2011a.md)|
27
-|2011|FL|exome|2|2|CREBBP|[@pasqualucciInactivatingMutationsAcetyltransferase2011a](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md)|
27
+|2011|DLBCL|Sanger|1|1|MYD88|[@ngoOncogenicallyActiveMYD882011a](papers/ngoOncogenicallyActiveMYD882011a.md)|
28
+|2012|BL|RNA-seq/WGS/exome|5|5|CCND3|[@richterRecurrentMutationID32012a](papers/richterRecurrentMutationID32012a.md)|
28 29
|2012|MZL|Panel|2|2|CARD11|[@yanBCRTLRSignaling2012a](papers/yanBCRTLRSignaling2012a.md)|
29
-|2012|MZL|exome|21|10|ARID1A|[@rossiCodingGenomeSplenic2012c](papers/rossiCodingGenomeSplenic2012c.md)|
30 30
|2012|MZL|Array/Sanger|1|1|ATM|[@braggioGenomicAnalysisMarginal2012](papers/braggioGenomicAnalysisMarginal2012.md)|
31
-|2012|BL|RNA-seq/WGS/exome|5|5|CCND3|[@richterRecurrentMutationID32012a](papers/richterRecurrentMutationID32012a.md)|
32
-|2012|BL|RNA-seq|20|4|C16orf48|[@schmitzBurkittLymphomaPathogenesis2012](papers/schmitzBurkittLymphomaPathogenesis2012.md)|
31
+|2012|DLBCL|exome|39|18|ACTB|[@lohrDiscoveryPrioritizationSomatic2012a](papers/lohrDiscoveryPrioritizationSomatic2012a.md)|
32
+|2012|DLBCL|Sanger|1|0|MIR142|[@kwanhianMicroRNA142Mutated202012b](papers/kwanhianMicroRNA142Mutated202012b.md)|
33 33
|2012|DLBCL|WGS|1|1|CXCR4|[@khodabakhshiRecurrentTargetsAberrant2012](papers/khodabakhshiRecurrentTargetsAberrant2012.md)|
34 34
|2012|BL|exome|60|3|ACAD9|[@loveGeneticLandscapeMutations2012](papers/loveGeneticLandscapeMutations2012.md)|
35
-|2012|DLBCL|Sanger|1|0|MIR142|[@kwanhianMicroRNA142Mutated202012b](papers/kwanhianMicroRNA142Mutated202012b.md)|
35
+|2012|MZL|exome|21|10|ARID1A|[@rossiCodingGenomeSplenic2012c](papers/rossiCodingGenomeSplenic2012c.md)|
36
+|2012|BL|RNA-seq|20|4|C16orf48|[@schmitzBurkittLymphomaPathogenesis2012](papers/schmitzBurkittLymphomaPathogenesis2012.md)|
36 37
|2012|PMBL|Array/Sanger|2|2|MAP3K14|[@ottoGeneticLesionsTRAF32012a](papers/ottoGeneticLesionsTRAF32012a.md)|
37
-|2012|DLBCL|exome|39|18|ACTB|[@lohrDiscoveryPrioritizationSomatic2012a](papers/lohrDiscoveryPrioritizationSomatic2012a.md)|
38
-|2013|DLBCL|Sanger|1|1|EBF1|[@bohleRoleEarlyBcell2013](papers/bohleRoleEarlyBcell2013.md)|
39 38
|2013|MZL|exome|8|0|AMOTL1|[@parryWholeExomeSequencing2013](papers/parryWholeExomeSequencing2013.md)|
40
-|2013|DLBCL|exome|16|8|ARID1A|[@zhangGeneticHeterogeneityDiffuse2013](papers/zhangGeneticHeterogeneityDiffuse2013.md)|
41
-|2013|DLBCL|WGS|38|9|ABI3BP|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013.md)|
42 39
|2013|MCL|WGS/exome|27|11|ABCA3|[@beaLandscapeSomaticMutations2013](papers/beaLandscapeSomaticMutations2013.md)|
43
-|2014|BL|Sanger|3|1|ARHGEF1|[@muppidiLossSignalingGa132014b](papers/muppidiLossSignalingGa132014b.md)|
40
+|2013|DLBCL|WGS|38|9|ABI3BP|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013.md)|
41
+|2013|DLBCL|Sanger|1|1|EBF1|[@bohleRoleEarlyBcell2013](papers/bohleRoleEarlyBcell2013.md)|
42
+|2013|DLBCL|exome|16|8|ARID1A|[@zhangGeneticHeterogeneityDiffuse2013](papers/zhangGeneticHeterogeneityDiffuse2013.md)|
44 43
|2014|MCL|exome|28|2|ANK2|[@zhangGenomicLandscapeMantle2014](papers/zhangGenomicLandscapeMantle2014.md)|
45 44
|2014|PMBL|WGS/Sanger|1|1|PTPN1|[@gunawardanaRecurrentSomaticMutations2014c](papers/gunawardanaRecurrentSomaticMutations2014c.md)|
45
+|2014|BL|Sanger|3|1|ARHGEF1|[@muppidiLossSignalingGa132014b](papers/muppidiLossSignalingGa132014b.md)|
46 46
|2015|BL|RNA-seq|1|0|CCNF|[@abateDistinctViralMutational2015a](papers/abateDistinctViralMutational2015a.md)|
47
-|2015|PMBL|exome|29|11|ARIH2|[@reichelFlowSortingExome2015a](papers/reichelFlowSortingExome2015a.md)|
48
-|2015|PMBL|Sanger|1|1|CD58|[@schneiderAlterationsCD58Gene2015a](papers/schneiderAlterationsCD58Gene2015a.md)|
49 47
|2015|PMBL|Sanger|1|1|CIITA|[@mottokGenomicAlterationsCIITA2015b](papers/mottokGenomicAlterationsCIITA2015b.md)|
50
-|2015|FL|Sanger|1|1|STAT6|[@yildizActivatingSTAT6Mutations2015c](papers/yildizActivatingSTAT6Mutations2015c.md)|
51 48
|2015|DLBCL|Sanger|1|0|MAP2K1|[@shinBRAFV600EMAP2K12015](papers/shinBRAFV600EMAP2K12015.md)|
52
-|2016|DLBCL|exome|1|1|XPO1|[@mareschalWholeExomeSequencing2016](papers/mareschalWholeExomeSequencing2016.md)|
53
-|2016|PMBL|exome/Sanger|1|1|NFKBIE|[@mansouriFrequentNFKBIEDeletions2016](papers/mansouriFrequentNFKBIEDeletions2016.md)|
54
-|2016|MCL|exome|1|1|CARD11|[@wuGeneticHeterogeneityPrimary2016](papers/wuGeneticHeterogeneityPrimary2016.md)|
55
-|2016|FL|exome|1|1|MAP2K1|[@louissaintPediatrictypeNodalFollicular2016a](papers/louissaintPediatrictypeNodalFollicular2016a.md)|
49
+|2015|PMBL|Sanger|1|1|CD58|[@schneiderAlterationsCD58Gene2015a](papers/schneiderAlterationsCD58Gene2015a.md)|
50
+|2015|PMBL|exome|29|11|ARIH2|[@reichelFlowSortingExome2015a](papers/reichelFlowSortingExome2015a.md)|
51
+|2015|DLBCL|Sanger|1|1|STAT6|[@yildizActivatingSTAT6Mutations2015c](papers/yildizActivatingSTAT6Mutations2015c.md)|
56 52
|2016|MZL|exome/panel|31|8|ABCA13|[@spinaGeneticsNodalMarginal2016b](papers/spinaGeneticsNodalMarginal2016b.md)|
53
+|2016|PMBL|Sanger|1|1|XPO1|[@jardinRecurrentMutationsExportin2016a](papers/jardinRecurrentMutationsExportin2016a.md)|
54
+|2016|MCL|exome|1|1|CARD11|[@wuGeneticHeterogeneityPrimary2016](papers/wuGeneticHeterogeneityPrimary2016.md)|
55
+|2016|PMBL|exome/Sanger|1|1|NFKBIE|[@mansouriFrequentNFKBIEDeletions2016](papers/mansouriFrequentNFKBIEDeletions2016.md)|
57 56
|2016|MZL|exome|1|1|KLHL6|[@ganapathiGeneticLandscapeDural2016](papers/ganapathiGeneticLandscapeDural2016.md)|
57
+|2016|DLBCL|exome|1|1|XPO1|[@mareschalWholeExomeSequencing2016](papers/mareschalWholeExomeSequencing2016.md)|
58 58
|2016|FL|WGS|3|3|ATP6AP1|[@okosunRecurrentMTORC1activatingRRAGC2016a](papers/okosunRecurrentMTORC1activatingRRAGC2016a.md)|
59
-|2016|PMBL|Sanger|1|1|XPO1|[@jardinRecurrentMutationsExportin2016a](papers/jardinRecurrentMutationsExportin2016a.md)|
60 59
|2016|DLBCL|exome|2|2|NFKBIE|[@morinGeneticLandscapesRelapsed2016](papers/morinGeneticLandscapesRelapsed2016.md)|
61
-|2017|MZL|exome|28|2|ARHGAP20|[@jalladesExomeSequencingIdentifies2017](papers/jalladesExomeSequencingIdentifies2017.md)|
60
+|2016|FL|exome|1|1|MAP2K1|[@louissaintPediatrictypeNodalFollicular2016a](papers/louissaintPediatrictypeNodalFollicular2016a.md)|
61
+|2017|MZL|panel|2|0|CD9B|[@vandenbrandRecurrentMutationsGenes2017](papers/vandenbrandRecurrentMutationsGenes2017.md)|
62 62
|2017|FL|exome|22|17|ARID1A|[@krysiakRecurrentSomaticMutations2017b](papers/krysiakRecurrentSomaticMutations2017b.md)|
63 63
|2017|DLBCL|exome|3|3|BTK|[@albuquerqueEnhancingKnowledgeDiscovery2017a](papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md)|
64 64
|2017|DLBCL|exome|59|6|ANKRD17|[@reddyGeneticFunctionalDrivers2017](papers/reddyGeneticFunctionalDrivers2017.md)|
65
-|2017|MZL|panel|2|0|CD9B|[@vandenbrandRecurrentMutationsGenes2017](papers/vandenbrandRecurrentMutationsGenes2017.md)|
65
+|2017|MZL|exome|28|2|ARHGAP20|[@jalladesExomeSequencingIdentifies2017](papers/jalladesExomeSequencingIdentifies2017.md)|
66 66
|2018|PMBL|exome|10|1|AKAP6|[@tiacciPervasiveMutationsJAKSTAT2018b](papers/tiacciPervasiveMutationsJAKSTAT2018b.md)|
67 67
|2018|DLBCL|exome|19|2|CCL4|[@chapuyMolecularSubtypesDiffuse2018b](papers/chapuyMolecularSubtypesDiffuse2018b.md)|
68
-|2018|DLBCL|WGS|19|7|AICDA|[@arthurGenomewideDiscoverySomatic2018](papers/arthurGenomewideDiscoverySomatic2018.md)|
69 68
|2018|PMBL|Sanger|1|1|IL4R|[@viganoSomaticIL4RMutations2018b](papers/viganoSomaticIL4RMutations2018b.md)|
70 69
|2018|DLBCL|exome|16|7|CXCR5|[@schmitzGeneticsPathogenesisDiffuse2018a](papers/schmitzGeneticsPathogenesisDiffuse2018a.md)|
71
-|2019|BL|RNA-seq/exome|47|4|ALPK2|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019.md)|
72
-|2019|PMBL|exome|21|6|CISH|[@mottokIntegrativeGenomicAnalysis2019b](papers/mottokIntegrativeGenomicAnalysis2019b.md)|
73
-|2019|BL|WGS|13|9|BACH2|[@grandeGenomewideDiscoverySomatic2019](papers/grandeGenomewideDiscoverySomatic2019.md)|
70
+|2018|DLBCL|WGS|19|7|AICDA|[@arthurGenomewideDiscoverySomatic2018](papers/arthurGenomewideDiscoverySomatic2018.md)|
74 71
|2019|BL|exome|1|0|KMT2C|[@zhouSporadicEndemicBurkitt2019](papers/zhouSporadicEndemicBurkitt2019.md)|
72
+|2019|BL|RNA-seq/exome|47|4|ALPK2|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019.md)|
75 73
|2019|PMBL|exome|7|4|ACTB|[@wienandGenomicAnalysesFlowsorted2019b](papers/wienandGenomicAnalysesFlowsorted2019b.md)|
76
-|2020|FL|panel|1|1|CTSS|[@barariaCathepsinAlterationsInduce2020c](papers/barariaCathepsinAlterationsInduce2020c.md)|
77
-|2020|MCL|WGS/exome|7|6|B2M|[@pararajalingamCodingNoncodingDrivers2020](papers/pararajalingamCodingNoncodingDrivers2020.md)|
74
+|2019|BL|WGS|13|9|BACH2|[@grandeGenomewideDiscoverySomatic2019](papers/grandeGenomewideDiscoverySomatic2019.md)|
75
+|2019|PMBL|exome|21|6|CISH|[@mottokIntegrativeGenomicAnalysis2019b](papers/mottokIntegrativeGenomicAnalysis2019b.md)|
78 76
|2020|PMBL|panel|10|1|ACTG1|[@deschGenotypingCirculatingTumor2020](papers/deschGenotypingCirculatingTumor2020.md)|
79 77
|2020|DLBCL|exome/panel|1|1|MS4A1|[@rushtonGeneticEvolutionaryPatterns2020](papers/rushtonGeneticEvolutionaryPatterns2020.md)|
78
+|2020|FL|panel|1|1|CTSS|[@barariaCathepsinAlterationsInduce2020c](papers/barariaCathepsinAlterationsInduce2020c.md)|
80 79
|2020|MCL|WGS|5|3|BCOR|[@nadeuGenomicEpigenomicInsights2020b](papers/nadeuGenomicEpigenomicInsights2020b.md)|
80
+|2020|MCL|WGS/exome|7|6|B2M|[@pararajalingamCodingNoncodingDrivers2020](papers/pararajalingamCodingNoncodingDrivers2020.md)|
81 81
|2021|PMBL|exome|11|5|ABCA13|[@sarkozyMutationalLandscapeGray2021a](papers/sarkozyMutationalLandscapeGray2021a.md)|
82 82
|2021|PMBL|exome|14|6|BIRC3|[@dunsCharacterizationDLBCLPMBL2021b](papers/dunsCharacterizationDLBCLPMBL2021b.md)|
83 83
|2021|DLBCL|WGS|38|3|ACTG1|[@hubschmannMutationalMechanismsShaping2021b](papers/hubschmannMutationalMechanismsShaping2021b.md)|
84 84
|2022|BL|panel|25|0|ADAMTS5|[@burkhardtClinicalRelevanceMolecular2022b](papers/burkhardtClinicalRelevanceMolecular2022b.md)|
85
-|2023|PMBL|exome|7|2|ARID5B|[@gomezUltraDeepSequencingReveals2023](papers/gomezUltraDeepSequencingReveals2023.md)|
86
-|2023|FL|exome|20|1|ABL2|[@russler-germainMutationsAssociatedProgression2023b](papers/russler-germainMutationsAssociatedProgression2023b.md)|
87 85
|2023|BL|WGS|5|2|CDKN2C|[@thomasGeneticSubgroupsInform2023](papers/thomasGeneticSubgroupsInform2023.md)|
86
+|2023|FL|exome|20|1|ABL2|[@russler-germainMutationsAssociatedProgression2023b](papers/russler-germainMutationsAssociatedProgression2023b.md)|
87
+|2023|PMBL|exome|7|2|ARID5B|[@gomezUltraDeepSequencingReveals2023](papers/gomezUltraDeepSequencingReveals2023.md)|
88 88
89 89
# References
90 90