b01d3324cd4b09cd6cf8dd9884218bfe00f45d93
BL_genes.md
| ... | ... | @@ -15,22 +15,22 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First BL evidence | Other entities | |
| 17 | 17 | |:-:|:-:|:-|:-| |
| 18 | -|[ARID1A](ARID1A)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 19 | -|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a]| |
|
| 18 | +|[ARID1A](ARID1A)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 19 | +|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 20 | 20 | |[BMP7](BMP7)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 21 | 21 | |[CCND3](CCND3)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
| 22 | 22 | |[CHD8](CHD8)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]| |
| 23 | -|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 23 | +|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 24 | 24 | |[EIF4A1](EIF4A1)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 25 | 25 | |[EPPK1](EPPK1)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 26 | -|[FBXO11](FBXO11)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 26 | +|[FBXO11](FBXO11)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@hubschmannMutationalMechanismsShaping2021b; @parryWholeExomeSequencing2013]| |
|
| 27 | 27 | |[FOXO1](FOXO1)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]| |
| 28 | -|[GNA13](GNA13)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | +|[GNA13](GNA13)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
|
| 29 | 29 | |[GNAI2](GNAI2)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]| |
| 30 | 30 | |[HNRNPU](HNRNPU)|1, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]| |
| 31 | -|[ID3](ID3)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 32 | -|[KMT2D](KMT2D)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
|
| 33 | -|[MYC](MYC)|1, aSHM|[Study Overview](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 31 | +|[ID3](ID3)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 32 | +|[KMT2D](KMT2D)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]| |
|
| 33 | +|[MYC](MYC)|1, aSHM|[Study Overview](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017]| |
|
| 34 | 34 | |[P2RY8](P2RY8)|1|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 35 | 35 | |[PHF6](PHF6)|1|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]| |
| 36 | 36 | |[PTEN](PTEN)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| ... | ... | @@ -41,7 +41,7 @@ link-citations: true |
| 41 | 41 | |[TCF3](TCF3)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 42 | 42 | |[TCL1A](TCL1A)|1, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 43 | 43 | |[TFAP4](TFAP4)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 44 | -|[TP53](TP53)|1|[Study Overview](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@lohrDiscoveryPrioritizationSomatic2012a; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]| |
|
| 44 | +|[TP53](TP53)|1|[Study Overview](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 45 | 45 | |[USP7](USP7)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 46 | 46 | |[WNK1](WNK1)|1|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@jalladesExomeSequencingIdentifies2017; @hubschmannMutationalMechanismsShaping2021b]| |
| 47 | 47 | |
| ... | ... | @@ -49,151 +49,83 @@ link-citations: true |
| 49 | 49 | |
| 50 | 50 | ### *152 total* |
| 51 | 51 | |
| 52 | +### This includes *70 genes failed QC (2-F) |
|
| 52 | 53 | |Gene|Tier| First BL evidence | Other entities | |
| 53 | 54 | |:-:|:-:|:-|:-| |
| 54 | -|[ACAD9](ACAD9)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 55 | -|[ACE](ACE)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 56 | 55 | |[ADAMTS5](ADAMTS5)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 57 | 56 | |[ADNP](ADNP)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 58 | 57 | |[AGO4](AGO4)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 59 | -|[ALPK2](ALPK2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 60 | 58 | |[ARHGEF1](ARHGEF1)|2|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|| |
| 61 | -|[ATP2C2](ATP2C2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 62 | 59 | |[BACH2](BACH2)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 63 | -|[BCL2](BCL2)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992]| |
|
| 60 | +|[BCL2](BCL2)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@tanakaFrequentIncidenceSomatic1992; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 64 | 61 | |[BCL6](BCL6)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
| 65 | -|[BRAF](BRAF)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]| |
|
| 66 | -|[BRD4](BRD4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 67 | -|[BTG1](BTG1)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 68 | -|[BTG2](BTG2)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 62 | +|[BTG1](BTG1)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 69 | 63 | |[C16orf48](C16orf48)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 70 | -|[C6orf27](C6orf27)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 71 | -|[CAD](CAD)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 72 | -|[CARD11](CARD11)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]| |
|
| 64 | +|[CARD11](CARD11)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@yanBCRTLRSignaling2012a; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @lenzOncogenicCARD11Mutations2008]| |
|
| 73 | 65 | |[CARD4](CARD4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 74 | 66 | |[CCNF](CCNF)|2|[Study Overview](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]|| |
| 75 | -|[CCT6B](CCT6B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 76 | 67 | |[CD79A](CD79A)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]| |
| 77 | -|[CD79B](CD79B)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 78 | -|[CD83](CD83)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 68 | +|[CD83](CD83)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]| |
|
| 79 | 69 | |[CDC73](CDC73)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
| 80 | -|[CDH17](CDH17)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 81 | 70 | |[CDKN2A](CDKN2A)|2|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]| |
| 82 | 71 | |[CDKN2C](CDKN2C)|2|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|| |
| 83 | 72 | |[CHD4](CHD4)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 84 | -|[COL4A2](COL4A2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 85 | 73 | |[CPXM2](CPXM2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 86 | -|[CREBBP](CREBBP)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 87 | -|[CTCF](CTCF)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 88 | -|[CXCR4](CXCR4)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]| |
|
| 89 | -|[CYB5D1](CYB5D1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 90 | -|[CYP4F22](CYP4F22)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 74 | +|[CREBBP](CREBBP)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 75 | +|[CXCR4](CXCR4)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]| |
|
| 91 | 76 | |[DHCR7](DHCR7)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 92 | -|[DLGAP1](DLGAP1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 93 | -|[DNMT1](DNMT1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 94 | -|[DTX1](DTX1)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]| |
|
| 95 | 77 | |[E2F2](E2F2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 96 | -|[EBF1](EBF1)|2, aSHM|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013]| |
|
| 78 | +|[EBF1](EBF1)|2, aSHM|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]| |
|
| 97 | 79 | |[EDNRB](EDNRB)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 98 | 80 | |[EHD1](EHD1)|2|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|| |
| 99 | -|[EIF2C4](EIF2C4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 100 | 81 | |[ELP2](ELP2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 101 | -|[EML2](EML2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 102 | -|[ENTPD3](ENTPD3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 103 | -|[EP300](EP300)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 104 | -|[EPHB2](EPHB2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 82 | +|[EP300](EP300)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @rossiCodingGenomeSplenic2012c]| |
|
| 105 | 83 | |[ERAP1](ERAP1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 106 | -|[ETS1](ETS1)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 107 | 84 | |[EXOSC6](EXOSC6)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 108 | -|[EZH2](EZH2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 109 | -|[FAM129B](FAM129B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 110 | -|[FGFR3](FGFR3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 85 | +|[EZH2](EZH2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a]| |
|
| 111 | 86 | |[FLYWCH1](FLYWCH1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 112 | -|[FTCD](FTCD)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 113 | -|[FZD3](FZD3)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 114 | 87 | |[GGTLA4](GGTLA4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 115 | 88 | |[GRB2](GRB2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@pasqualucciAnalysisCodingGenome2011]| |
| 116 | -|[GRIK5](GRIK5)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 117 | 89 | |[GTSE1](GTSE1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 118 | -|[HIST1H1C](HIST1H1C)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 119 | 90 | |[HIST1H1E](HIST1H1E)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
| 120 | -|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 121 | -|[HIST1H2AM](HIST1H2AM)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 122 | -|[HIST1H2BK](HIST1H2BK)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]| |
|
| 123 | 91 | |[HIST1H3D](HIST1H3D)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 124 | -|[HIST1H3H](HIST1H3H)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 125 | 92 | |[HIST1H3I](HIST1H3I)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
| 126 | -|[HIST1H3J](HIST1H3J)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 127 | 93 | |[HIST1H4J](HIST1H4J)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 128 | 94 | |[HLA-DQB1](HLA-DQB1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 129 | -|[ICK](ICK)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 130 | -|[IGLL5](IGLL5)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 95 | +|[IGLL5](IGLL5)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @deschGenotypingCirculatingTumor2020]| |
|
| 131 | 96 | |[IKZF3](IKZF3)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]| |
| 132 | 97 | |[IRF8](IRF8)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]| |
| 133 | -|[ITPR3](ITPR3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 134 | 98 | |[KANK2](KANK2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 135 | -|[KCNK10](KCNK10)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 136 | -|[KIFC3](KIFC3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 137 | 99 | |[KLHL26](KLHL26)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 138 | -|[KLHL6](KLHL6)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@ganapathiGeneticLandscapeDural2016; @morinFrequentMutationHistonemodifying2011]| |
|
| 139 | -|[KMT2C](KMT2C)|2|[Study Overview](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]| |
|
| 140 | -|[LTB](LTB)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]| |
|
| 141 | -|[MAP3K6](MAP3K6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 100 | +|[KLHL6](KLHL6)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @ganapathiGeneticLandscapeDural2016]| |
|
| 101 | +|[KMT2C](KMT2C)|2|[Study Overview](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 102 | +|[LTB](LTB)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 142 | 103 | |[MCL1](MCL1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]| |
| 143 | 104 | |[MIR142](MIR142)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]| |
| 144 | 105 | |[MKI67](MKI67)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 145 | -|[MME](MME)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 146 | -|[MTOR](MTOR)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 147 | -|[MYH10](MYH10)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 148 | 106 | |[MYO18A](MYO18A)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 149 | 107 | |[NBEAL1](NBEAL1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 150 | 108 | |[NCOR2](NCOR2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]| |
| 151 | 109 | |[NOA1](NOA1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 152 | -|[NOTCH1](NOTCH1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]| |
|
| 153 | -|[NOTCH2](NOTCH2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]| |
|
| 154 | -|[NRXN2](NRXN2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 110 | +|[NOTCH2](NOTCH2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@troenNOTCH2MutationsMarginal2008; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]| |
|
| 155 | 111 | |[P2RY2](P2RY2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 156 | -|[PABPC4L](PABPC4L)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 157 | -|[PC](PC)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 158 | 112 | |[PCBP1](PCBP1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 159 | -|[PCDHA11](PCDHA11)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 160 | 113 | |[PDCD11](PDCD11)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 161 | -|[PDZRN3](PDZRN3)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 162 | -|[PIK3R1](PIK3R1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 163 | 114 | |[PIM1](PIM1)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
| 164 | 115 | |[PLCG2](PLCG2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 165 | -|[POLRMT](POLRMT)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 166 | -|[POR](POR)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 167 | 116 | |[PPP6R2](PPP6R2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 168 | 117 | |[PREX1](PREX1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 169 | -|[PRSS22](PRSS22)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 170 | -|[PTPRN](PTPRN)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 171 | -|[PXDNL](PXDNL)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 172 | 118 | |[RAC2](RAC2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 173 | 119 | |[RANBP6](RANBP6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 174 | -|[RBP3](RBP3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 175 | -|[RET](RET)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 176 | 120 | |[REV3L](REV3L)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 177 | 121 | |[RNF144B](RNF144B)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 178 | 122 | |[RPL10](RPL10)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 179 | 123 | |[S1PR2](S1PR2)|2, aSHM|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@morinFrequentMutationHistonemodifying2011]| |
| 180 | 124 | |[SAL3](SAL3)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 181 | -|[SALL3](SALL3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]| |
|
| 182 | -|[SAPS2](SAPS2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 183 | -|[SBF1](SBF1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 184 | -|[SF3B1](SF3B1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 185 | -|[SHANK1](SHANK1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 186 | -|[SLC29A2](SLC29A2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 187 | -|[SNTB2](SNTB2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 188 | -|[SYNGAP1](SYNGAP1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 189 | -|[TBC1D9B](TBC1D9B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 190 | 125 | |[TET2](TET2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 191 | -|[TIGD6](TIGD6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 192 | 126 | |[TOP2A](TOP2A)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 193 | -|[TPST2](TPST2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 194 | 127 | |[TTN](TTN)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 195 | 128 | |[VWA7](VWA7)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 196 | -|[WDR7](WDR7)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 197 | 129 | |[WDR90](WDR90)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 198 | 130 | |[WHAMM](WHAMM)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 199 | 131 | |[WNK2](WNK2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| ... | ... | @@ -201,8 +133,77 @@ link-citations: true |
| 201 | 133 | |[ZAN](ZAN)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 202 | 134 | |[ZBTB7A](ZBTB7A)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@reddyGeneticFunctionalDrivers2017]| |
| 203 | 135 | |[ZFP36L1](ZFP36L1)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
| 204 | -|[ZNF229](ZNF229)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 205 | 136 | |[ZNF85](ZNF85)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 137 | +|[ACAD9](ACAD9)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 138 | +|[ACE](ACE)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 139 | +|[ALPK2](ALPK2)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 140 | +|[ATP2C2](ATP2C2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 141 | +|[BRAF](BRAF)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]| |
|
| 142 | +|[BRD4](BRD4)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 143 | +|[BTG2](BTG2)|2, aSHM-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 144 | +|[C6orf27](C6orf27)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 145 | +|[CAD](CAD)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 146 | +|[CCT6B](CCT6B)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 147 | +|[CD79B](CD79B)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 148 | +|[CDH17](CDH17)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 149 | +|[COL4A2](COL4A2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 150 | +|[CTCF](CTCF)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 151 | +|[CYB5D1](CYB5D1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 152 | +|[CYP4F22](CYP4F22)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 153 | +|[DLGAP1](DLGAP1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 154 | +|[DNMT1](DNMT1)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 155 | +|[DTX1](DTX1)|2, aSHM-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]| |
|
| 156 | +|[EIF2C4](EIF2C4)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 157 | +|[EML2](EML2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 158 | +|[ENTPD3](ENTPD3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 159 | +|[EPHB2](EPHB2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 160 | +|[ETS1](ETS1)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 161 | +|[FAM129B](FAM129B)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 162 | +|[FGFR3](FGFR3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 163 | +|[FTCD](FTCD)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 164 | +|[FZD3](FZD3)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 165 | +|[GRIK5](GRIK5)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 166 | +|[HIST1H1C](HIST1H1C)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 167 | +|[HIST1H2AG](HIST1H2AG)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 168 | +|[HIST1H2AM](HIST1H2AM)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 169 | +|[HIST1H2BK](HIST1H2BK)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]| |
|
| 170 | +|[HIST1H3H](HIST1H3H)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 171 | +|[HIST1H3J](HIST1H3J)|2, aSHM-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 172 | +|[ICK](ICK)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 173 | +|[ITPR3](ITPR3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 174 | +|[KCNK10](KCNK10)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 175 | +|[KIFC3](KIFC3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 176 | +|[MAP3K6](MAP3K6)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 177 | +|[MME](MME)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 178 | +|[MTOR](MTOR)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 179 | +|[MYH10](MYH10)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 180 | +|[NOTCH1](NOTCH1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]| |
|
| 181 | +|[NRXN2](NRXN2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 182 | +|[PABPC4L](PABPC4L)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 183 | +|[PC](PC)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 184 | +|[PCDHA11](PCDHA11)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 185 | +|[PDZRN3](PDZRN3)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 186 | +|[PIK3R1](PIK3R1)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 187 | +|[POLRMT](POLRMT)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 188 | +|[POR](POR)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 189 | +|[PRSS22](PRSS22)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 190 | +|[PTPRN](PTPRN)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 191 | +|[PXDNL](PXDNL)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 192 | +|[RBP3](RBP3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 193 | +|[RET](RET)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 194 | +|[SALL3](SALL3)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]| |
|
| 195 | +|[SAPS2](SAPS2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 196 | +|[SBF1](SBF1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 197 | +|[SF3B1](SF3B1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 198 | +|[SHANK1](SHANK1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 199 | +|[SLC29A2](SLC29A2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 200 | +|[SNTB2](SNTB2)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 201 | +|[SYNGAP1](SYNGAP1)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 202 | +|[TBC1D9B](TBC1D9B)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 203 | +|[TIGD6](TIGD6)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 204 | +|[TPST2](TPST2)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 205 | +|[WDR7](WDR7)|2-F|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 206 | +|[ZNF229](ZNF229)|2-F|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 206 | 207 | |
| 207 | 208 | |
| 208 | 209 | # References |
DLBCL_genes.md
| ... | ... | @@ -17,11 +17,11 @@ link-citations: true |
| 17 | 17 | |:-:|:-:|:-|:-| |
| 18 | 18 | |[ACTB](ACTB)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]| |
| 19 | 19 | |[ACTG1](ACTG1)|1, aSHM|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]| |
| 20 | -|[ARID1A](ARID1A)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 21 | -|[ATM](ATM)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]| |
|
| 22 | -|[B2M](B2M)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 20 | +|[ARID1A](ARID1A)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 21 | +|[ATM](ATM)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]| |
|
| 22 | +|[B2M](B2M)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]| |
|
| 23 | 23 | |[BCL10](BCL10)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]| |
| 24 | -|[BCL2](BCL2)|1, aSHM|[Study Overview](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 24 | +|[BCL2](BCL2)|1, aSHM|[Study Overview](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 25 | 25 | |[BCL6](BCL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 26 | 26 | |[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
| 27 | 27 | |[BIRC6](BIRC6)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]| |
| ... | ... | @@ -29,39 +29,39 @@ link-citations: true |
| 29 | 29 | |[BTG1](BTG1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]| |
| 30 | 30 | |[BTG2](BTG2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 31 | 31 | |[BTK](BTK)|1|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]| |
| 32 | -|[CARD11](CARD11)|1|[Study Overview](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a; @paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 33 | -|[CCND3](CCND3)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017]| |
|
| 32 | +|[CARD11](CARD11)|1|[Study Overview](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]| |
|
| 33 | +|[CCND3](CCND3)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 34 | 34 | |[CD58](CD58)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]| |
| 35 | 35 | |[CD70](CD70)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 36 | 36 | |[CD79B](CD79B)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 37 | -|[CD83](CD83)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 38 | -|[CDKN2A](CDKN2A)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019]| |
|
| 39 | -|[CREBBP](CREBBP)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013]| |
|
| 37 | +|[CD83](CD83)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 38 | +|[CDKN2A](CDKN2A)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]| |
|
| 39 | +|[CREBBP](CREBBP)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]| |
|
| 40 | 40 | |[CXCR4](CXCR4)|1, aSHM|[Study Overview](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
| 41 | 41 | |[CXCR5](CXCR5)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 42 | -|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 42 | +|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 43 | 43 | |[DTX1](DTX1)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @gomezUltraDeepSequencingReveals2023]| |
| 44 | 44 | |[DUSP2](DUSP2)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 45 | -|[EBF1](EBF1)|1, aSHM|[Study Overview](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]| |
|
| 45 | +|[EBF1](EBF1)|1, aSHM|[Study Overview](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a]| |
|
| 46 | 46 | |[EEF1A1](EEF1A1)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| 47 | 47 | |[EP300](EP300)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
| 48 | 48 | |[ETS1](ETS1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 49 | 49 | |[ETV6](ETV6)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 50 | -|[EZH2](EZH2)|1|[Study Overview](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 50 | +|[EZH2](EZH2)|1|[Study Overview](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]| |
|
| 51 | 51 | |[FAS](FAS)|1|[Study Overview](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]| |
| 52 | -|[FBXO11](FBXO11)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]| |
|
| 52 | +|[FBXO11](FBXO11)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]| |
|
| 53 | 53 | |[FBXW7](FBXW7)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 54 | -|[FOXO1](FOXO1)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 54 | +|[FOXO1](FOXO1)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 55 | 55 | |[GNA13](GNA13)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]| |
| 56 | 56 | |[GNAI2](GNAI2)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]| |
| 57 | 57 | |[GRB2](GRB2)|1|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@paneaWholeGenomeLandscape2019]| |
| 58 | 58 | |[GRHPR](GRHPR)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 59 | 59 | |[HIST1H1B](HIST1H1B)|1, aSHM|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@krysiakRecurrentSomaticMutations2017b; @sarkozyMutationalLandscapeGray2021a]| |
| 60 | 60 | |[HIST1H1C](HIST1H1C)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 61 | -|[HIST1H1D](HIST1H1D)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]| |
|
| 62 | -|[HIST1H1E](HIST1H1E)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019]| |
|
| 61 | +|[HIST1H1D](HIST1H1D)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]| |
|
| 62 | +|[HIST1H1E](HIST1H1E)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 63 | 63 | |[HIST1H2AC](HIST1H2AC)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 64 | -|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 64 | +|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 65 | 65 | |[HIST1H2BC](HIST1H2BC)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b; @mottokIntegrativeGenomicAnalysis2019b]| |
| 66 | 66 | |[HIST1H2BK](HIST1H2BK)|1, aSHM||[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
| 67 | 67 | |[HIST1H3B](HIST1H3B)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| ... | ... | @@ -75,13 +75,13 @@ link-citations: true |
| 75 | 75 | |[IKZF3](IKZF3)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]| |
| 76 | 76 | |[IL4R](IL4R)|1, aSHM|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]| |
| 77 | 77 | |[IRF4](IRF4)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 78 | -|[IRF8](IRF8)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
|
| 78 | +|[IRF8](IRF8)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 79 | 79 | |[ITPKB](ITPKB)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 80 | 80 | |[KLF2](KLF2)|1, aSHM|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
| 81 | 81 | |[KLHL14](KLHL14)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 82 | -|[KLHL6](KLHL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]| |
|
| 83 | -|[KMT2C](KMT2C)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]| |
|
| 84 | -|[KMT2D](KMT2D)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]| |
|
| 82 | +|[KLHL6](KLHL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]| |
|
| 83 | +|[KMT2C](KMT2C)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019; @sarkozyMutationalLandscapeGray2021a]| |
|
| 84 | +|[KMT2D](KMT2D)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020]| |
|
| 85 | 85 | |[KRAS](KRAS)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 86 | 86 | |[LCOR](LCOR)|1|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 87 | 87 | |[LTB](LTB)|1, aSHM|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]| |
| ... | ... | @@ -97,11 +97,11 @@ link-citations: true |
| 97 | 97 | |[NFKBIE](NFKBIE)|1|[Study Overview](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016]| |
| 98 | 98 | |[NFKBIZ](NFKBIZ)|1, noncoding|[Study Overview](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|| |
| 99 | 99 | |[NOL9](NOL9)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]| |
| 100 | -|[NOTCH1](NOTCH1)|1|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
|
| 100 | +|[NOTCH1](NOTCH1)|1|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]| |
|
| 101 | 101 | |[NOTCH2](NOTCH2)|1|[Study Overview](papers/troenNOTCH2MutationsMarginal2008)[@troenNOTCH2MutationsMarginal2008]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
| 102 | 102 | |[OSBPL10](OSBPL10)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 103 | 103 | |[P2RY8](P2RY8)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]| |
| 104 | -|[PIM1](PIM1)|1, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 104 | +|[PIM1](PIM1)|1, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 105 | 105 | |[PIM2](PIM2)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]| |
| 106 | 106 | |[POU2AF1](POU2AF1)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b]| |
| 107 | 107 | |[POU2F2](POU2F2)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b]| |
| ... | ... | @@ -127,10 +127,10 @@ link-citations: true |
| 127 | 127 | |[TET2](TET2)|1|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@paneaWholeGenomeLandscape2019]| |
| 128 | 128 | |[TMEM30A](TMEM30A)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
| 129 | 129 | |[TMSB4X](TMSB4X)|1, aSHM|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
| 130 | -|[TNFAIP3](TNFAIP3)|1|[Study Overview](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]| |
|
| 130 | +|[TNFAIP3](TNFAIP3)|1|[Study Overview](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 131 | 131 | |[TNFRSF14](TNFRSF14)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]| |
| 132 | 132 | |[TOX](TOX)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 133 | -|[TP53](TP53)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]| |
|
| 133 | +|[TP53](TP53)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
|
| 134 | 134 | |[TRRAP](TRRAP)|1|[Study Overview](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@rossiCodingGenomeSplenic2012c]| |
| 135 | 135 | |[UBE2A](UBE2A)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| 136 | 136 | |[UNC5C](UNC5C)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| ... | ... | @@ -139,7 +139,7 @@ link-citations: true |
| 139 | 139 | |[WEE1](WEE1)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 140 | 140 | |[XPO1](XPO1)|1|[Study Overview](papers/mareschalWholeExomeSequencing2016)[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]| |
| 141 | 141 | |[ZC3H12A](ZC3H12A)|1|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 142 | -|[ZFP36L1](ZFP36L1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]| |
|
| 142 | +|[ZFP36L1](ZFP36L1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019]| |
|
| 143 | 143 | |[ZNF292](ZNF292)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 144 | 144 | |[ZNF608](ZNF608)|1, aSHM|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 145 | 145 | |
| ... | ... | @@ -147,37 +147,31 @@ link-citations: true |
| 147 | 147 | |
| 148 | 148 | ### *215 total* |
| 149 | 149 | |
| 150 | +### This includes *29 genes failed QC (2-F) |
|
| 150 | 151 | |Gene|Tier| First DLBCL evidence | Other entities | |
| 151 | 152 | |:-:|:-:|:-|:-| |
| 152 | 153 | |[ABI3BP](ABI3BP)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 153 | 154 | |[ADAMTS1](ADAMTS1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 154 | 155 | |[AICDA](AICDA)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 155 | 156 | |[ANKRD12](ANKRD12)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 156 | -|[ANKRD17](ANKRD17)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 157 | -|[ARID1B](ARID1B)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 158 | 157 | |[ARID5B](ARID5B)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]| |
| 159 | 158 | |[ATR](ATR)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 160 | 159 | |[BCL11A](BCL11A)|2, aSHM||| |
| 161 | -|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]| |
|
| 160 | +|[BCOR](BCOR)|2||[@jalladesExomeSequencingIdentifies2017; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 162 | 161 | |[BCR](BCR)|2, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 163 | -|[BIRC3](BIRC3)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b; @beaLandscapeSomaticMutations2013]| |
|
| 162 | +|[BIRC3](BIRC3)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a]| |
|
| 164 | 163 | |[BLK](BLK)|2, aSHM||| |
| 165 | 164 | |[BRINP3](BRINP3)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 166 | 165 | |[BTBD3](BTBD3)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 167 | 166 | |[CADPS2](CADPS2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 168 | 167 | |[CASP8](CASP8)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 169 | -|[CBLB](CBLB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 170 | 168 | |[CCL4](CCL4)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 171 | 169 | |[CD22](CD22)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 172 | 170 | |[CD274](CD274)|2|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
| 173 | 171 | |[CD36](CD36)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 174 | 172 | |[CD44](CD44)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 175 | 173 | |[CD74](CD74)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 176 | -|[CDC73](CDC73)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 177 | 174 | |[CDH9](CDH9)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 178 | -|[CHD1](CHD1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 179 | -|[CHD8](CHD8)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 180 | -|[CHST2](CHST2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 181 | 175 | |[CIITA](CIITA)|2, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]| |
| 182 | 176 | |[CNOT2](CNOT2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 183 | 177 | |[CNTNAP5](CNTNAP5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| ... | ... | @@ -185,13 +179,9 @@ link-citations: true |
| 185 | 179 | |[CPS1](CPS1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 186 | 180 | |[CRIP1](CRIP1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 187 | 181 | |[DAZAP1](DAZAP1)|2|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 188 | -|[DCAF6](DCAF6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 189 | -|[DDX10](DDX10)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 190 | 182 | |[DHX16](DHX16)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 191 | -|[DICER1](DICER1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 192 | 183 | |[DNAH5](DNAH5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017]| |
| 193 | 184 | |[DNM2](DNM2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 194 | -|[DNMT3A](DNMT3A)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 195 | 185 | |[DOCK1](DOCK1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 196 | 186 | |[DSG4](DSG4)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 197 | 187 | |[EIF2AK3](EIF2AK3)|2, aSHM||| |
| ... | ... | @@ -210,24 +200,22 @@ link-citations: true |
| 210 | 200 | |[GABRA1](GABRA1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 211 | 201 | |[GABRA2](GABRA2)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 212 | 202 | |[GAK](GAK)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 213 | -|[GNAS](GNAS)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 214 | 203 | |[GOLGA5](GOLGA5)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 215 | 204 | |[GPC5](GPC5)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 216 | 205 | |[GSG2](GSG2)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 217 | 206 | |[H1FOO](H1FOO)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 218 | 207 | |[HDAC7](HDAC7)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 219 | -|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 208 | +|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 220 | 209 | |[HIST1H2AL](HIST1H2AL)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 221 | 210 | |[HIST1H2BO](HIST1H2BO)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 222 | 211 | |[HLA-DMA](HLA-DMA)|2||| |
| 223 | 212 | |[HLA-DQA1](HLA-DQA1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 224 | 213 | |[HNF1B](HNF1B)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 225 | 214 | |[HNRNPH1](HNRNPH1)|2, noncoding|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 226 | -|[HRAS](HRAS)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 227 | -|[ID3](ID3)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]| |
|
| 215 | +|[ID3](ID3)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]| |
|
| 228 | 216 | |[IER2](IER2)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 229 | 217 | |[IFNGR1](IFNGR1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 230 | -|[IGLL5](IGLL5)|2, aSHM||[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 218 | +|[IGLL5](IGLL5)|2, aSHM||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 231 | 219 | |[IKBKB](IKBKB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiAlterationBIRC3Multiple2011a]| |
| 232 | 220 | |[IKBKE](IKBKE)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 233 | 221 | |[IL16](IL16)|2||| |
| ... | ... | @@ -242,7 +230,6 @@ link-citations: true |
| 242 | 230 | |[KRTAP5-5](KRTAP5-5)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 243 | 231 | |[LAMA5](LAMA5)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 244 | 232 | |[LAPTM5](LAPTM5)|2, aSHM||[@hubschmannMutationalMechanismsShaping2021b]| |
| 245 | -|[LIN54](LIN54)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 246 | 233 | |[LPP](LPP)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 247 | 234 | |[LRP12](LRP12)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 248 | 235 | |[LRRN3](LRRN3)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@sarkozyMutationalLandscapeGray2021a]| |
| ... | ... | @@ -250,17 +237,13 @@ link-citations: true |
| 250 | 237 | |[MAGT1](MAGT1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 251 | 238 | |[MALAT1](MALAT1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 252 | 239 | |[MAP2K1](MAP2K1)|2|[Study Overview](papers/shinBRAFV600EMAP2K12015)[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]| |
| 253 | -|[MAP4K4](MAP4K4)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 254 | -|[MARK1](MARK1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 255 | -|[MCL1](MCL1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 240 | +|[MCL1](MCL1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]| |
|
| 256 | 241 | |[MECOM](MECOM)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 257 | 242 | |[MET](MET)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 258 | 243 | |[MIR142](MIR142)|2, aSHM|[Study Overview](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
| 259 | 244 | |[MIR155HG](MIR155HG)|2, aSHM||| |
| 260 | 245 | |[MPDZ](MPDZ)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]| |
| 261 | -|[MSH2](MSH2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 262 | 246 | |[MSH6](MSH6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 263 | -|[MYB](MYB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]| |
|
| 264 | 247 | |[MYBPC2](MYBPC2)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 265 | 248 | |[MYO1E](MYO1E)|2, aSHM||| |
| 266 | 249 | |[MYOM2](MYOM2)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| ... | ... | @@ -268,12 +251,10 @@ link-citations: true |
| 268 | 251 | |[NANOG](NANOG)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 269 | 252 | |[NAV1](NAV1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 270 | 253 | |[NCOA3](NCOA3)|2, aSHM||| |
| 271 | -|[NCOR1](NCOR1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 272 | -|[NCOR2](NCOR2)|2||[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 254 | +|[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 273 | 255 | |[NEAT1](NEAT1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 274 | 256 | |[NF1](NF1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 275 | 257 | |[NFKB1](NFKB1)|2||| |
| 276 | -|[NFKB2](NFKB2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 277 | 258 | |[NLRC5](NLRC5)|2||| |
| 278 | 259 | |[NLRP5](NLRP5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 279 | 260 | |[NLRP8](NLRP8)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| ... | ... | @@ -291,8 +272,6 @@ link-citations: true |
| 291 | 272 | |[PDE4DIP](PDE4DIP)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 292 | 273 | |[PDGFC](PDGFC)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 293 | 274 | |[PDS5B](PDS5B)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 294 | -|[PHF6](PHF6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]| |
|
| 295 | -|[PIK3CD](PIK3CD)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 296 | 275 | |[PIK3R1](PIK3R1)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]| |
| 297 | 276 | |[PKD1](PKD1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 298 | 277 | |[PNPO](PNPO)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| ... | ... | @@ -305,17 +284,14 @@ link-citations: true |
| 305 | 284 | |[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]| |
| 306 | 285 | |[PTPN23](PTPN23)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 307 | 286 | |[PTPN6](PTPN6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 308 | -|[PTPRK](PTPRK)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 309 | 287 | |[RAC2](RAC2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]| |
| 310 | 288 | |[RAD9A](RAD9A)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 311 | -|[RARA](RARA)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 312 | 289 | |[RCC](RCC)|2, aSHM||| |
| 313 | 290 | |[RFTN1](RFTN1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 314 | 291 | |[RFXAP](RFXAP)|2||| |
| 315 | 292 | |[RHEX](RHEX)|2, aSHM||| |
| 316 | 293 | |[RHOH](RHOH)|2, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
| 317 | 294 | |[RUBCNL](RUBCNL)|2, aSHM||| |
| 318 | -|[RUNX1](RUNX1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 319 | 295 | |[S1PR1](S1PR1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 320 | 296 | |[SAMD9L](SAMD9L)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 321 | 297 | |[SARM1](SARM1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| ... | ... | @@ -333,7 +309,6 @@ link-citations: true |
| 333 | 309 | |[SRRM2](SRRM2)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 334 | 310 | |[ST6GAL1](ST6GAL1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 335 | 311 | |[STAT5B](STAT5B)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
| 336 | -|[SYK](SYK)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 337 | 312 | |[SYN2](SYN2)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 338 | 313 | |[SYPL1](SYPL1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 339 | 314 | |[TAP1](TAP1)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| ... | ... | @@ -351,18 +326,44 @@ link-citations: true |
| 351 | 326 | |[UBR5](UBR5)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 352 | 327 | |[UNC5B](UNC5B)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 353 | 328 | |[UNC5D](UNC5D)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 354 | -|[WAC](WAC)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]| |
|
| 355 | 329 | |[WDFY3](WDFY3)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 356 | -|[WNK1](WNK1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@jalladesExomeSequencingIdentifies2017; @thomasGeneticSubgroupsInform2023]| |
|
| 330 | +|[WNK1](WNK1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@thomasGeneticSubgroupsInform2023; @jalladesExomeSequencingIdentifies2017]| |
|
| 357 | 331 | |[XBP1](XBP1)|2, aSHM||| |
| 358 | 332 | |[YY1](YY1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 359 | -|[ZBTB7A](ZBTB7A)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 360 | 333 | |[ZCCHC7](ZCCHC7)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 361 | 334 | |[ZEB2](ZEB2)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 362 | -|[ZFAT](ZFAT)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 363 | 335 | |[ZFX](ZFX)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 364 | 336 | |[ZNF217](ZNF217)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| 365 | 337 | |[ZNF423](ZNF423)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 338 | +|[ANKRD17](ANKRD17)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 339 | +|[ARID1B](ARID1B)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 340 | +|[CBLB](CBLB)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 341 | +|[CDC73](CDC73)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 342 | +|[CHD1](CHD1)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 343 | +|[CHD8](CHD8)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 344 | +|[CHST2](CHST2)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 345 | +|[DCAF6](DCAF6)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 346 | +|[DDX10](DDX10)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 347 | +|[DICER1](DICER1)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 348 | +|[DNMT3A](DNMT3A)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 349 | +|[GNAS](GNAS)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 350 | +|[HRAS](HRAS)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 351 | +|[LIN54](LIN54)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 352 | +|[MAP4K4](MAP4K4)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 353 | +|[MARK1](MARK1)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 354 | +|[MSH2](MSH2)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 355 | +|[MYB](MYB)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]| |
|
| 356 | +|[NCOR1](NCOR1)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 357 | +|[NFKB2](NFKB2)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 358 | +|[PHF6](PHF6)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]| |
|
| 359 | +|[PIK3CD](PIK3CD)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 360 | +|[PTPRK](PTPRK)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 361 | +|[RARA](RARA)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 362 | +|[RUNX1](RUNX1)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 363 | +|[SYK](SYK)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 364 | +|[WAC](WAC)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]| |
|
| 365 | +|[ZBTB7A](ZBTB7A)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 366 | +|[ZFAT](ZFAT)|2-F|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 366 | 367 | |
| 367 | 368 | |
| 368 | 369 | # References |