DLBCL_genes.md
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@@ -23,12 +23,12 @@ link-citations: true
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|[BCL10](BCL10)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@xiaBCL10MutationsDefine2022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023; @spinaGeneticsNodalMarginal2016b]||
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|[BCL2](BCL2)|Tier 1 GE[@tanakaFrequentIncidenceSomatic1992], aSHM|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)|[@burkhardtClinicalRelevanceMolecular2022; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]||
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|[BCL6](BCL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@masclePointMutationsBCL62003], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @loveGeneticLandscapeMutations2012]||
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-|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015]||
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+|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015]||
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|[BIRC6](BIRC6)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@sarkozyMutationalLandscapeGray2021]||
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|[BRAF](BRAF)|Tier 1 GE[@tiacciBRAFMutationsHairycell2011], FE[@wanMechanismActivationRAFERK2004]|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011)|[@loveGeneticLandscapeMutations2012]||
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|[BTG1](BTG1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@almasmoumFrequentLossBTG12021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @sarkozyMutationalLandscapeGray2021]||
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|[BTG2](BTG2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @loveGeneticLandscapeMutations2012]||
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-|[BTK](BTK)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017], FE[@huFollicularLymphomaassociatedBTK2021]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@krysiakRecurrentSomaticMutations2017b]||
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+|[BTK](BTK)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017], FE[@huFollicularLymphomaassociatedBTK2021]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@krysiakRecurrentSomaticMutations2017]||
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|[CARD11](CARD11)|Tier 1 GE[@lenzOncogenicCARD11Mutations2008], FE[@lenzOncogenicCARD11Mutations2008]|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]||
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|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012]||
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|[CD58](CD58)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schneiderAlterationsCD58Gene2015]||
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@@ -38,7 +38,7 @@ link-citations: true
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|[CDKN2A](CDKN2A)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]||
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|[CIITA](CIITA)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@mottokGenomicAlterationsCIITA2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015]||
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|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]||
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-|[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]||
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+|[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]||
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|[DDX3X](DDX3X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@gongSequentialInverseDysregulation2021]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019; @schmitzBurkittLymphomaPathogenesis2012]||
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|[DTX1](DTX1)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], aSHM|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]||
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|[DUSP2](DUSP2)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021]||