Changes in b284c98: add sankey

				MZL_genes.md
			
          @@ -7,7 +7,44 @@ link-citations: true

           ## Origins of MZL genes

          -![](MZL_sankey-1.svg)

          +

          +```mermaid

          +---

          +config:

          +  sankey:

          +    showValues: false

          +    linkColor: target

          +    width: 800

          +    height: 750

          +    nodeAlignment: right

          +---

          +sankey-beta

          +Vandenbrand 2017, Tier 2 MZL genes, 2

          +Rossi 2012, Tier 1 MZL genes, 10

          +Rossi 2012, Tier 2 MZL genes, 11

          +Yan 2012, Tier 1 MZL genes, 2

          +Parry 2013, Tier 2 MZL genes, 7

          +Spina 2016, Tier 1 MZL genes, 8

          +Spina 2016, Tier 2 MZL genes, 23

          +Jallades 2017, Tier 1 MZL genes, 2

          +Jallades 2017, Tier 2 MZL genes, 26

          +Rossi 2011, Tier 1 MZL genes, 4

          +Rossi 2011, Tier 2 MZL genes, 1

          +MZL genes, MZL-exome, 28

          +MZL-exome, Jallades 2017, 28

          +MZL genes, MZL-Sanger, 5

          +MZL-Sanger, Rossi 2011, 5

          +MZL genes, MZL-exome/panel, 31

          +MZL-exome/panel, Spina 2016, 31

          +MZL genes, MZL-exome, 21

          +MZL-exome, Rossi 2012, 21

          +MZL genes, MZL-panel, 2

          +MZL-panel, Vandenbrand 2017, 2

          +MZL genes, MZL-Panel, 2

          +MZL-Panel, Yan 2012, 2

          +MZL genes, MZL-exome, 7

          +MZL-exome, Parry 2013, 7

          +```

           ## Tier 1 MZL genes

          @@ -15,35 +52,35 @@ link-citations: true

           |Gene|Tier| First MZL evidence | Other entities |

           |:-:|:-:|:-|:-|

          -|[ACTB](ACTB)|1||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]|

          -|[ARID1A](ARID1A)|1|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]|

          +|[ACTB](ACTB)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|

          +|[ARID1A](ARID1A)|1|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]|

           |[ATM](ATM)|1|[@braggioGenomicAnalysisMarginal2012]|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]|

           |[BCL10](BCL10)|1|[@spinaGeneticsNodalMarginal2016b]|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]|

          -|[BCL7A](BCL7A)|1||[@arthurGenomewideDiscoverySomatic2018; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|

          -|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|

          +|[BCL7A](BCL7A)|1||[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]|

          +|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]|

           |[BRAF](BRAF)|1||[@tiacciBRAFMutationsHairycell2011a; @loveGeneticLandscapeMutations2012]|

          -|[BTG1](BTG1)|1||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|

          -|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a]|[@paneaWholeGenomeLandscape2019; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]|

          -|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]|

          +|[BTG1](BTG1)|1||[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]|

          +|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a]|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|

          +|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]|

           |[CXCR4](CXCR4)|1||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]|

          -|[DTX1](DTX1)|1|[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @paneaWholeGenomeLandscape2019]|

          -|[EP300](EP300)|1|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|

          -|[EZH2](EZH2)|1||[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]|

          +|[DTX1](DTX1)|1|[@rossiCodingGenomeSplenic2012c]|[@schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023; @paneaWholeGenomeLandscape2019]|

          +|[EP300](EP300)|1|[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]|

          +|[EZH2](EZH2)|1||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]|

           |[FAS](FAS)|1|[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]|

           |[FAT1](FAT1)|1|[@spinaGeneticsNodalMarginal2016b]||

          -|[FOXO1](FOXO1)|1||[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|

          +|[FOXO1](FOXO1)|1||[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]|

           |[H1-4](H1-4)|1|||

           |[H1-5](H1-5)|1|||

          -|[ID3](ID3)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]|

          +|[ID3](ID3)|1|[@spinaGeneticsNodalMarginal2016b]|[@richterRecurrentMutationID32012a; @schmitzBurkittLymphomaPathogenesis2012]|

           |[KLF2](KLF2)|1|[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]|

          -|[KLHL6](KLHL6)|1|[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|

          -|[KMT2D](KMT2D)|1|[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013]|

          +|[KLHL6](KLHL6)|1|[@ganapathiGeneticLandscapeDural2016]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|

          +|[KMT2D](KMT2D)|1|[@rossiCodingGenomeSplenic2012c]|[@deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]|

           |[MAP3K14](MAP3K14)|1|[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]|

           |[MPEG1](MPEG1)|1||[@morinMutationalStructuralAnalysis2013]|

           |[MYD88](MYD88)|1|[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]|

           |[NCOR2](NCOR2)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]|

           |[NOL9](NOL9)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|

          -|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c]|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]|

          +|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c]|[@loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]|

           |[NOTCH2](NOTCH2)|1|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]|

           |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|

           |[POU2AF1](POU2AF1)|1||[@krysiakRecurrentSomaticMutations2017b]|

          @@ -54,9 +91,9 @@ link-citations: true

           |[STAT6](STAT6)|1||[@yildizActivatingSTAT6Mutations2015c; @ritzRecurrentMutationsSTAT62009a]|

           |[TBL1XR1](TBL1XR1)|1|[@rossiCodingGenomeSplenic2012c]|[@mareschalWholeExomeSequencing2016]|

           |[TNFAIP3](TNFAIP3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]|

          -|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b]|[@cheungAcquiredTNFRSF14Mutations2010a]|

          -|[TP53](TP53)|1|[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]|

          -|[TRAF3](TRAF3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]|

          +|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @cheungAcquiredTNFRSF14Mutations2010a]|

          +|[TP53](TP53)|1|[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b]|

          +|[TRAF3](TRAF3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a; @pasqualucciAnalysisCodingGenome2011]|

           ## Tier 2 MZL genes

          @@ -79,10 +116,10 @@ link-citations: true

           |[CD79A](CD79A)|2|[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]|

           |[CD9B](CD9B)|2|[@vandenbrandRecurrentMutationsGenes2017]||

           |[CDC42BPB](CDC42BPB)|2|[@spinaGeneticsNodalMarginal2016b]||

          -|[CDKN2A](CDKN2A)|2|[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|

          +|[CDKN2A](CDKN2A)|2|[@spinaGeneticsNodalMarginal2016b]|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|

           |[CLGN](CLGN)|2|[@spinaGeneticsNodalMarginal2016b]||

           |[CNKSR2](CNKSR2)|2|[@spinaGeneticsNodalMarginal2016b]||

          -|[CREBBP](CREBBP)|2|[@parryWholeExomeSequencing2013]|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]|

          +|[CREBBP](CREBBP)|2|[@parryWholeExomeSequencing2013]|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|

           |[DNAH5](DNAH5)|2|[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013]|

           |[DNAH7](DNAH7)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[DNAI1](DNAI1)|2|[@jalladesExomeSequencingIdentifies2017]||

          @@ -94,16 +131,16 @@ link-citations: true

           |[EGR2](EGR2)|2|[@rossiCodingGenomeSplenic2012c]||

           |[EZH1](EZH1)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[FAT4](FAT4)|2|[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]|

          -|[FBXO11](FBXO11)|2|[@parryWholeExomeSequencing2013]|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]|

          +|[FBXO11](FBXO11)|2|[@parryWholeExomeSequencing2013]|[@hubschmannMutationalMechanismsShaping2021b; @richterRecurrentMutationID32012a]|

           |[GPR98](GPR98)|2|[@spinaGeneticsNodalMarginal2016b]||

           |[GPS2](GPS2)|2|[@rossiCodingGenomeSplenic2012c]||

           |[HIST1H1D](HIST1H1D)|2|[@jalladesExomeSequencingIdentifies2017]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]|

           |[HIST1H2AD](HIST1H2AD)|2|[@jalladesExomeSequencingIdentifies2017]||

          -|[HIST1H2AG](HIST1H2AG)|2|[@rossiCodingGenomeSplenic2012c]|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|

          +|[HIST1H2AG](HIST1H2AG)|2|[@rossiCodingGenomeSplenic2012c]|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|

           |[HIST1H2BK](HIST1H2BK)|2|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019]|

           |[HIST4H4](HIST4H4)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[HRAS](HRAS)|2|[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]|

          -|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a]|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]|

          +|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a]|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019b]|

           |[KAT6A](KAT6A)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[KDM6A](KDM6A)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[KIF26A](KIF26A)|2|[@jalladesExomeSequencingIdentifies2017]||

          @@ -111,7 +148,7 @@ link-citations: true

           |[MCRS1](MCRS1)|2|[@rossiCodingGenomeSplenic2012c]||

           |[MGA](MGA)|2|[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]|

           |[MSL2](MSL2)|2|[@rossiCodingGenomeSplenic2012c]||

          -|[MYC](MYC)|2|[@jalladesExomeSequencingIdentifies2017]|[@johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|

          +|[MYC](MYC)|2|[@jalladesExomeSequencingIdentifies2017]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]|

           |[MYLK](MYLK)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[NCOA6](NCOA6)|2|[@jalladesExomeSequencingIdentifies2017]||

           |[NRAS](NRAS)|2|[@jalladesExomeSequencingIdentifies2017]||

          @@ -136,7 +173,7 @@ link-citations: true

           |[TRRAP](TRRAP)|2|[@rossiCodingGenomeSplenic2012c]|[@parryWholeExomeSequencing2013]|

           |[USH2A](USH2A)|2|[@parryWholeExomeSequencing2013]||

           |[WAC](WAC)|2|[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]|

          -|[WNK1](WNK1)|2|[@jalladesExomeSequencingIdentifies2017]|[@hubschmannMutationalMechanismsShaping2021b; @thomasGeneticSubgroupsInform2023]|

          +|[WNK1](WNK1)|2|[@jalladesExomeSequencingIdentifies2017]|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]|

           |[ZNF9](ZNF9)|2|[@spinaGeneticsNodalMarginal2016b]||

...	...	@@ -7,7 +7,44 @@ link-citations: true
7	7
8	8	## Origins of MZL genes
9	9
10		-![](MZL_sankey-1.svg)
	10	+
	11	+```mermaid
	12	+---
	13	+config:
	14	+ sankey:
	15	+ showValues: false
	16	+ linkColor: target
	17	+ width: 800
	18	+ height: 750
	19	+ nodeAlignment: right
	20	+---
	21	+sankey-beta
	22	+Vandenbrand 2017, Tier 2 MZL genes, 2
	23	+Rossi 2012, Tier 1 MZL genes, 10
	24	+Rossi 2012, Tier 2 MZL genes, 11
	25	+Yan 2012, Tier 1 MZL genes, 2
	26	+Parry 2013, Tier 2 MZL genes, 7
	27	+Spina 2016, Tier 1 MZL genes, 8
	28	+Spina 2016, Tier 2 MZL genes, 23
	29	+Jallades 2017, Tier 1 MZL genes, 2
	30	+Jallades 2017, Tier 2 MZL genes, 26
	31	+Rossi 2011, Tier 1 MZL genes, 4
	32	+Rossi 2011, Tier 2 MZL genes, 1
	33	+MZL genes, MZL-exome, 28
	34	+MZL-exome, Jallades 2017, 28
	35	+MZL genes, MZL-Sanger, 5
	36	+MZL-Sanger, Rossi 2011, 5
	37	+MZL genes, MZL-exome/panel, 31
	38	+MZL-exome/panel, Spina 2016, 31
	39	+MZL genes, MZL-exome, 21
	40	+MZL-exome, Rossi 2012, 21
	41	+MZL genes, MZL-panel, 2
	42	+MZL-panel, Vandenbrand 2017, 2
	43	+MZL genes, MZL-Panel, 2
	44	+MZL-Panel, Yan 2012, 2
	45	+MZL genes, MZL-exome, 7
	46	+MZL-exome, Parry 2013, 7
	47	+```
11	48
12	49	## Tier 1 MZL genes
13	50
...	...	@@ -15,35 +52,35 @@ link-citations: true
15	52
16	53	\|Gene\|Tier\| First MZL evidence \| Other entities \|
17	54	\|:-:\|:-:\|:-\|:-\|
18		-\|[ACTB](ACTB)\|1\|\|[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]\|
19		-\|[ARID1A](ARID1A)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]\|
	55	+\|[ACTB](ACTB)\|1\|\|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]\|
	56	+\|[ARID1A](ARID1A)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]\|
20	57	\|[ATM](ATM)\|1\|[@braggioGenomicAnalysisMarginal2012]\|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]\|
21	58	\|[BCL10](BCL10)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]\|
22		-\|[BCL7A](BCL7A)\|1\|\|[@arthurGenomewideDiscoverySomatic2018; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]\|
23		-\|[BIRC3](BIRC3)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]\|
	59	+\|[BCL7A](BCL7A)\|1\|\|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]\|
	60	+\|[BIRC3](BIRC3)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]\|
24	61	\|[BRAF](BRAF)\|1\|\|[@tiacciBRAFMutationsHairycell2011a; @loveGeneticLandscapeMutations2012]\|
25		-\|[BTG1](BTG1)\|1\|\|[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]\|
26		-\|[CARD11](CARD11)\|1\|[@yanBCRTLRSignaling2012a]\|[@paneaWholeGenomeLandscape2019; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]\|
27		-\|[CCND3](CCND3)\|1\|[@jalladesExomeSequencingIdentifies2017]\|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]\|
	62	+\|[BTG1](BTG1)\|1\|\|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]\|
	63	+\|[CARD11](CARD11)\|1\|[@yanBCRTLRSignaling2012a]\|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]\|
	64	+\|[CCND3](CCND3)\|1\|[@jalladesExomeSequencingIdentifies2017]\|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]\|
28	65	\|[CXCR4](CXCR4)\|1\|\|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]\|
29		-\|[DTX1](DTX1)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @paneaWholeGenomeLandscape2019]\|
30		-\|[EP300](EP300)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@paneaWholeGenomeLandscape2019; @pasqualucciInactivatingMutationsAcetyltransferase2011a]\|
31		-\|[EZH2](EZH2)\|1\|\|[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]\|
	66	+\|[DTX1](DTX1)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023; @paneaWholeGenomeLandscape2019]\|
	67	+\|[EP300](EP300)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]\|
	68	+\|[EZH2](EZH2)\|1\|\|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]\|
32	69	\|[FAS](FAS)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@schollMutationsRegionFAS2007]\|
33	70	\|[FAT1](FAT1)\|1\|[@spinaGeneticsNodalMarginal2016b]\|\|
34		-\|[FOXO1](FOXO1)\|1\|\|[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]\|
	71	+\|[FOXO1](FOXO1)\|1\|\|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]\|
35	72	\|[H1-4](H1-4)\|1\|\|\|
36	73	\|[H1-5](H1-5)\|1\|\|\|
37		-\|[ID3](ID3)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]\|
	74	+\|[ID3](ID3)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@richterRecurrentMutationID32012a; @schmitzBurkittLymphomaPathogenesis2012]\|
38	75	\|[KLF2](KLF2)\|1\|[@jalladesExomeSequencingIdentifies2017]\|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]\|
39		-\|[KLHL6](KLHL6)\|1\|[@ganapathiGeneticLandscapeDural2016]\|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]\|
40		-\|[KMT2D](KMT2D)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013]\|
	76	+\|[KLHL6](KLHL6)\|1\|[@ganapathiGeneticLandscapeDural2016]\|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]\|
	77	+\|[KMT2D](KMT2D)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]\|
41	78	\|[MAP3K14](MAP3K14)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@ottoGeneticLesionsTRAF32012a]\|
42	79	\|[MPEG1](MPEG1)\|1\|\|[@morinMutationalStructuralAnalysis2013]\|
43	80	\|[MYD88](MYD88)\|1\|[@yanBCRTLRSignaling2012a]\|[@ngoOncogenicallyActiveMYD882011a]\|
44	81	\|[NCOR2](NCOR2)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]\|
45	82	\|[NOL9](NOL9)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@schmitzGeneticsPathogenesisDiffuse2018a]\|
46		-\|[NOTCH1](NOTCH1)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]\|
	83	+\|[NOTCH1](NOTCH1)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]\|
47	84	\|[NOTCH2](NOTCH2)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]\|
48	85	\|[PCLO](PCLO)\|1\|\|[@lohrDiscoveryPrioritizationSomatic2012a]\|
49	86	\|[POU2AF1](POU2AF1)\|1\|\|[@krysiakRecurrentSomaticMutations2017b]\|
...	...	@@ -54,9 +91,9 @@ link-citations: true
54	91	\|[STAT6](STAT6)\|1\|\|[@yildizActivatingSTAT6Mutations2015c; @ritzRecurrentMutationsSTAT62009a]\|
55	92	\|[TBL1XR1](TBL1XR1)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@mareschalWholeExomeSequencing2016]\|
56	93	\|[TNFAIP3](TNFAIP3)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]\|
57		-\|[TNFRSF14](TNFRSF14)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@cheungAcquiredTNFRSF14Mutations2010a]\|
58		-\|[TP53](TP53)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]\|
59		-\|[TRAF3](TRAF3)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]\|
	94	+\|[TNFRSF14](TNFRSF14)\|1\|[@spinaGeneticsNodalMarginal2016b]\|[@morinFrequentMutationHistonemodifying2011; @cheungAcquiredTNFRSF14Mutations2010a]\|
	95	+\|[TP53](TP53)\|1\|[@rossiCodingGenomeSplenic2012c]\|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b]\|
	96	+\|[TRAF3](TRAF3)\|1\|[@rossiAlterationBIRC3Multiple2011a]\|[@ottoGeneticLesionsTRAF32012a; @pasqualucciAnalysisCodingGenome2011]\|
60	97
61	98	## Tier 2 MZL genes
62	99
...	...	@@ -79,10 +116,10 @@ link-citations: true
79	116	\|[CD79A](CD79A)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@burkhardtClinicalRelevanceMolecular2022b]\|
80	117	\|[CD9B](CD9B)\|2\|[@vandenbrandRecurrentMutationsGenes2017]\|\|
81	118	\|[CDC42BPB](CDC42BPB)\|2\|[@spinaGeneticsNodalMarginal2016b]\|\|
82		-\|[CDKN2A](CDKN2A)\|2\|[@spinaGeneticsNodalMarginal2016b]\|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]\|
	119	+\|[CDKN2A](CDKN2A)\|2\|[@spinaGeneticsNodalMarginal2016b]\|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]\|
83	120	\|[CLGN](CLGN)\|2\|[@spinaGeneticsNodalMarginal2016b]\|\|
84	121	\|[CNKSR2](CNKSR2)\|2\|[@spinaGeneticsNodalMarginal2016b]\|\|
85		-\|[CREBBP](CREBBP)\|2\|[@parryWholeExomeSequencing2013]\|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]\|
	122	+\|[CREBBP](CREBBP)\|2\|[@parryWholeExomeSequencing2013]\|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]\|
86	123	\|[DNAH5](DNAH5)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@morinMutationalStructuralAnalysis2013]\|
87	124	\|[DNAH7](DNAH7)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
88	125	\|[DNAI1](DNAI1)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
...	...	@@ -94,16 +131,16 @@ link-citations: true
94	131	\|[EGR2](EGR2)\|2\|[@rossiCodingGenomeSplenic2012c]\|\|
95	132	\|[EZH1](EZH1)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
96	133	\|[FAT4](FAT4)\|2\|[@parryWholeExomeSequencing2013]\|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]\|
97		-\|[FBXO11](FBXO11)\|2\|[@parryWholeExomeSequencing2013]\|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]\|
	134	+\|[FBXO11](FBXO11)\|2\|[@parryWholeExomeSequencing2013]\|[@hubschmannMutationalMechanismsShaping2021b; @richterRecurrentMutationID32012a]\|
98	135	\|[GPR98](GPR98)\|2\|[@spinaGeneticsNodalMarginal2016b]\|\|
99	136	\|[GPS2](GPS2)\|2\|[@rossiCodingGenomeSplenic2012c]\|\|
100	137	\|[HIST1H1D](HIST1H1D)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]\|
101	138	\|[HIST1H2AD](HIST1H2AD)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
102		-\|[HIST1H2AG](HIST1H2AG)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]\|
	139	+\|[HIST1H2AG](HIST1H2AG)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]\|
103	140	\|[HIST1H2BK](HIST1H2BK)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@paneaWholeGenomeLandscape2019]\|
104	141	\|[HIST4H4](HIST4H4)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
105	142	\|[HRAS](HRAS)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@reddyGeneticFunctionalDrivers2017]\|
106		-\|[IKBKB](IKBKB)\|2\|[@rossiAlterationBIRC3Multiple2011a]\|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]\|
	143	+\|[IKBKB](IKBKB)\|2\|[@rossiAlterationBIRC3Multiple2011a]\|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019b]\|
107	144	\|[KAT6A](KAT6A)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
108	145	\|[KDM6A](KDM6A)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
109	146	\|[KIF26A](KIF26A)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
...	...	@@ -111,7 +148,7 @@ link-citations: true
111	148	\|[MCRS1](MCRS1)\|2\|[@rossiCodingGenomeSplenic2012c]\|\|
112	149	\|[MGA](MGA)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@zhangGeneticHeterogeneityDiffuse2013]\|
113	150	\|[MSL2](MSL2)\|2\|[@rossiCodingGenomeSplenic2012c]\|\|
114		-\|[MYC](MYC)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]\|
	151	+\|[MYC](MYC)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]\|
115	152	\|[MYLK](MYLK)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
116	153	\|[NCOA6](NCOA6)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
117	154	\|[NRAS](NRAS)\|2\|[@jalladesExomeSequencingIdentifies2017]\|\|
...	...	@@ -136,7 +173,7 @@ link-citations: true
136	173	\|[TRRAP](TRRAP)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@parryWholeExomeSequencing2013]\|
137	174	\|[USH2A](USH2A)\|2\|[@parryWholeExomeSequencing2013]\|\|
138	175	\|[WAC](WAC)\|2\|[@rossiCodingGenomeSplenic2012c]\|[@reddyGeneticFunctionalDrivers2017]\|
139		-\|[WNK1](WNK1)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@hubschmannMutationalMechanismsShaping2021b; @thomasGeneticSubgroupsInform2023]\|
	176	+\|[WNK1](WNK1)\|2\|[@jalladesExomeSequencingIdentifies2017]\|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]\|
140	177	\|[ZNF9](ZNF9)\|2\|[@spinaGeneticsNodalMarginal2016b]\|\|
141	178
142	179