b46443475db9f9c3d7f36d9fa6d30d49a9735d06
papers/reddyGeneticFunctionalDrivers2017.md
| ... | ... | @@ -63,6 +63,11 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 63 | 63 | |[JUNB](../JUNB)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| 64 | 64 | |[KCMF1](../KCMF1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| 65 | 65 | |[MAGT1](../MAGT1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| 66 | +|[MECOM](../MECOM)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 67 | +|[PTPN6](../PTPN6)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 68 | +|[MET](../MET)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 69 | +|[ZFX](../ZFX)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 70 | +|[YY1](../YY1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 66 | 71 | |[FOXP1](../FOXP1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| 67 | 72 | |[FUBP1](../FUBP1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| 68 | 73 | |[GOLGA5](../GOLGA5)|2 |★ ★ ★ ☆ ☆|**Pass**| |
| ... | ... | @@ -77,10 +82,6 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 77 | 82 | |[DNMT3A](../DNMT3A)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
| 78 | 83 | |[HRAS](../HRAS)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 79 | 84 | |[LIN54](../LIN54)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 80 | -|[MECOM](../MECOM)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 81 | -|[MET](../MET)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 82 | -|[ZFX](../ZFX)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 83 | -|[YY1](../YY1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 84 | 85 | |[MAP4K4](../MAP4K4)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 85 | 86 | |[MARK1](../MARK1)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
| 86 | 87 | |[MCL1](../MCL1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| ... | ... | @@ -91,7 +92,7 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 91 | 92 | |[NFKB2](../NFKB2)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 92 | 93 | |[PHF6](../PHF6)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 93 | 94 | |[PIK3CD](../PIK3CD)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 94 | -|[PTPN6](../PTPN6)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 95 | + |
|
| 95 | 96 | |[PTPRK](../PTPRK)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
| 96 | 97 | |[RARA](../RARA)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
| 97 | 98 | |[ARID1B](../ARID1B)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
papers/reddyGeneticFunctionalDrivers2017.pdf
papers/reddyGeneticFunctionalDrivers2017_tmp.html
| ... | ... | @@ -552,6 +552,36 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 552 | 552 | <td style="text-align:center"><strong>Pass</strong></td> |
| 553 | 553 | </tr> |
| 554 | 554 | <tr> |
| 555 | +<td style="text-align:left"><a href="../MECOM">MECOM</a></td> |
|
| 556 | +<td style="text-align:center">2</td> |
|
| 557 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 558 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 559 | +</tr> |
|
| 560 | +<tr> |
|
| 561 | +<td style="text-align:left"><a href="../PTPN6">PTPN6</a></td> |
|
| 562 | +<td style="text-align:center">2</td> |
|
| 563 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 564 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 565 | +</tr> |
|
| 566 | +<tr> |
|
| 567 | +<td style="text-align:left"><a href="../MET">MET</a></td> |
|
| 568 | +<td style="text-align:center">2</td> |
|
| 569 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 570 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 571 | +</tr> |
|
| 572 | +<tr> |
|
| 573 | +<td style="text-align:left"><a href="../ZFX">ZFX</a></td> |
|
| 574 | +<td style="text-align:center">2</td> |
|
| 575 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 576 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 577 | +</tr> |
|
| 578 | +<tr> |
|
| 579 | +<td style="text-align:left"><a href="../YY1">YY1</a></td> |
|
| 580 | +<td style="text-align:center">2</td> |
|
| 581 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 582 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 583 | +</tr> |
|
| 584 | +<tr> |
|
| 555 | 585 | <td style="text-align:left"><a href="../FOXP1">FOXP1</a></td> |
| 556 | 586 | <td style="text-align:center">2</td> |
| 557 | 587 | <td style="text-align:center">★ ★ ★ ☆ ☆</td> |
| ... | ... | @@ -636,30 +666,6 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 636 | 666 | <td style="text-align:center"><strong>Fail</strong></td> |
| 637 | 667 | </tr> |
| 638 | 668 | <tr> |
| 639 | -<td style="text-align:left"><a href="../MECOM">MECOM</a></td> |
|
| 640 | -<td style="text-align:center">2</td> |
|
| 641 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 642 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 643 | -</tr> |
|
| 644 | -<tr> |
|
| 645 | -<td style="text-align:left"><a href="../MET">MET</a></td> |
|
| 646 | -<td style="text-align:center">2</td> |
|
| 647 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 648 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 649 | -</tr> |
|
| 650 | -<tr> |
|
| 651 | -<td style="text-align:left"><a href="../ZFX">ZFX</a></td> |
|
| 652 | -<td style="text-align:center">2</td> |
|
| 653 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 654 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 655 | -</tr> |
|
| 656 | -<tr> |
|
| 657 | -<td style="text-align:left"><a href="../YY1">YY1</a></td> |
|
| 658 | -<td style="text-align:center">2</td> |
|
| 659 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 660 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 661 | -</tr> |
|
| 662 | -<tr> |
|
| 663 | 669 | <td style="text-align:left"><a href="../MAP4K4">MAP4K4</a></td> |
| 664 | 670 | <td style="text-align:center">2</td> |
| 665 | 671 | <td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
| ... | ... | @@ -719,68 +725,17 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 719 | 725 | <td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
| 720 | 726 | <td style="text-align:center"><strong>Fail</strong></td> |
| 721 | 727 | </tr> |
| 722 | -<tr> |
|
| 723 | -<td style="text-align:left"><a href="../PTPN6">PTPN6</a></td> |
|
| 724 | -<td style="text-align:center">2</td> |
|
| 725 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 726 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 727 | -</tr> |
|
| 728 | -<tr> |
|
| 729 | -<td style="text-align:left"><a href="../PTPRK">PTPRK</a></td> |
|
| 730 | -<td style="text-align:center">2</td> |
|
| 731 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 732 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 733 | -</tr> |
|
| 734 | -<tr> |
|
| 735 | -<td style="text-align:left"><a href="../RARA">RARA</a></td> |
|
| 736 | -<td style="text-align:center">2</td> |
|
| 737 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 738 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 739 | -</tr> |
|
| 740 | -<tr> |
|
| 741 | -<td style="text-align:left"><a href="../ARID1B">ARID1B</a></td> |
|
| 742 | -<td style="text-align:center">2</td> |
|
| 743 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 744 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 745 | -</tr> |
|
| 746 | -<tr> |
|
| 747 | -<td style="text-align:left"><a href="../RUNX1">RUNX1</a></td> |
|
| 748 | -<td style="text-align:center">2</td> |
|
| 749 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 750 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 751 | -</tr> |
|
| 752 | -<tr> |
|
| 753 | -<td style="text-align:left"><a href="../CBLB">CBLB</a></td> |
|
| 754 | -<td style="text-align:center">2</td> |
|
| 755 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 756 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 757 | -</tr> |
|
| 758 | -<tr> |
|
| 759 | -<td style="text-align:left"><a href="../SYK">SYK</a></td> |
|
| 760 | -<td style="text-align:center">2</td> |
|
| 761 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 762 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 763 | -</tr> |
|
| 764 | -<tr> |
|
| 765 | -<td style="text-align:left"><a href="../WAC">WAC</a></td> |
|
| 766 | -<td style="text-align:center">2</td> |
|
| 767 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 768 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 769 | -</tr> |
|
| 770 | -<tr> |
|
| 771 | -<td style="text-align:left"><a href="../ZBTB7A">ZBTB7A</a></td> |
|
| 772 | -<td style="text-align:center">2</td> |
|
| 773 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 774 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 775 | -</tr> |
|
| 776 | -<tr> |
|
| 777 | -<td style="text-align:left"><a href="../ZFAT">ZFAT</a></td> |
|
| 778 | -<td style="text-align:center">2</td> |
|
| 779 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 780 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 781 | -</tr> |
|
| 782 | 728 | </tbody> |
| 783 | 729 | </table> |
| 730 | +<p>|<a href="../PTPRK">PTPRK</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 731 | +|<a href="../RARA">RARA</a>|2 |★ ☆ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 732 | +|<a href="../ARID1B">ARID1B</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 733 | +|<a href="../RUNX1">RUNX1</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 734 | +|<a href="../CBLB">CBLB</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 735 | +|<a href="../SYK">SYK</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 736 | +|<a href="../WAC">WAC</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 737 | +|<a href="../ZBTB7A">ZBTB7A</a>|2 |★ ☆ ☆ ☆ ☆|<strong>Fail</strong>| |
|
| 738 | +|<a href="../ZFAT">ZFAT</a>|2 |★ ★ ☆ ☆ ☆|<strong>Fail</strong>|</p> |
|
| 784 | 739 | <h2 id="see-also">See Also</h2> |
| 785 | 740 | <p>The primary data supporting each of the mutations reported in this study can be viewed in <a href="https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/">IGV reports</a> along with mutations unique to the GAMBL re-analysis.[@drevalRevisitingReddyDLBCL2023]</p> |
| 786 | 741 | <h1 id="references">References</h1> |