BL_Tier1.md
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@@ -1,36 +1,36 @@
1 1
|Gene|Status| First BL study | Other lists |
2 2
|:-:|:-:|:-:|:----|
3
-|[ARID1A](ARID1A)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
3
+|[ARID1A](ARID1A)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
4 4
|[BACH2](BACH2)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||
5
-|[BCL6](BCL6)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes]|
6
-|[BCL7A](BCL7A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
5
+|[BCL6](BCL6)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes)|
6
+|[BCL7A](BCL7A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
7 7
|[BMP7](BMP7)|Tier 1|[Panea et al](papers/paneaWholeGenomeLandscape2019)||
8
-|[CCND3](CCND3)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
9
-|[CHD8](CHD8)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
10
-|[CREBBP](CREBBP)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes], (MZL Tier 2)[MZL_genes#tier-2-mzl-genes]|
11
-|[DDX3X](DDX3X)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 2)[FL_genes#tier-2-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes]|
12
-|[EZH2](EZH2)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
13
-|[FBXO11](FBXO11)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (MZL Tier 2)[MZL_genes#tier-2-mzl-genes]|
14
-|[FOXO1](FOXO1)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
15
-|[GNA13](GNA13)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes]|
16
-|[GNAI2](GNAI2)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes]|
17
-|[HIST1H1E](HIST1H1E)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes]|
18
-|[HNRNPU](HNRNPU)|Tier 1|[Panea et al](papers/paneaWholeGenomeLandscape2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes]|
19
-|[ID3](ID3)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|(DLBCL Tier 2)[DLBCL_genes#tier-2-dlbcl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
20
-|[IGLL5](IGLL5)|Tier 1|[Panea et al](papers/paneaWholeGenomeLandscape2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
21
-|[KMT2D](KMT2D)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MCL Tier 1)[MCL_genes#tier-1-mcl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
22
-|[MYC](MYC)|Tier 1|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MZL Tier 2)[MZL_genes#tier-2-mzl-genes]|
23
-|[P2RY8](P2RY8)|Tier 1|[Muppidi et al](papers/muppidiLossSignalingGa132014)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 2)[FL_genes#tier-2-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
24
-|[PCBP1](PCBP1)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|(PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
25
-|[PHF6](PHF6)|Tier 1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|(DLBCL Tier 3)[DLBCL_genes#tier-3-dlbcl-genes]|
26
-|[PTEN](PTEN)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes]|
27
-|[RFX7](RFX7)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes]|
28
-|[RHOA](RHOA)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 2)[FL_genes#tier-2-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
29
-|[SIN3A](SIN3A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
30
-|[SMARCA4](SMARCA4)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes], (MCL Tier 1)[MCL_genes#tier-1-mcl-genes]|
31
-|[TCF3](TCF3)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|(PMBL Tier 2)[PMBL_genes#tier-2-pmbl-genes]|
32
-|[TCL1A](TCL1A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 2)[DLBCL_genes#tier-2-dlbcl-genes]|
8
+|[CCND3](CCND3)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
9
+|[CHD8](CHD8)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
10
+|[CREBBP](CREBBP)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes), [MZL Tier 2](MZL_genes#tier-2-mzl-genes)|
11
+|[DDX3X](DDX3X)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 2](FL_genes#tier-2-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes)|
12
+|[EZH2](EZH2)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
13
+|[FBXO11](FBXO11)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [MZL Tier 2](MZL_genes#tier-2-mzl-genes)|
14
+|[FOXO1](FOXO1)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
15
+|[GNA13](GNA13)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes)|
16
+|[GNAI2](GNAI2)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes)|
17
+|[HIST1H1E](HIST1H1E)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes)|
18
+|[HNRNPU](HNRNPU)|Tier 1|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes)|
19
+|[ID3](ID3)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|[DLBCL Tier 2](DLBCL_genes#tier-2-dlbcl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
20
+|[IGLL5](IGLL5)|Tier 1|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
21
+|[KMT2D](KMT2D)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MCL Tier 1](MCL_genes#tier-1-mcl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
22
+|[MYC](MYC)|Tier 1|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MZL Tier 2](MZL_genes#tier-2-mzl-genes)|
23
+|[P2RY8](P2RY8)|Tier 1|[Muppidi et al](papers/muppidiLossSignalingGa132014)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 2](FL_genes#tier-2-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
24
+|[PCBP1](PCBP1)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
25
+|[PHF6](PHF6)|Tier 1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[DLBCL Tier 3](DLBCL_genes#tier-3-dlbcl-genes)|
26
+|[PTEN](PTEN)|Tier 1|[Love et al](papers/loveGeneticLandscapeMutations2012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes)|
27
+|[RFX7](RFX7)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes)|
28
+|[RHOA](RHOA)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 2](FL_genes#tier-2-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
29
+|[SIN3A](SIN3A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
30
+|[SMARCA4](SMARCA4)|Tier 1|[Richter et al](papers/richterRecurrentMutationID32012)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes), [MCL Tier 1](MCL_genes#tier-1-mcl-genes)|
31
+|[TCF3](TCF3)|Tier 1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[PMBL Tier 2](PMBL_genes#tier-2-pmbl-genes)|
32
+|[TCL1A](TCL1A)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 2](DLBCL_genes#tier-2-dlbcl-genes)|
33 33
|[TFAP4](TFAP4)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||
34
-|[TP53](TP53)|Tier 1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)|(DLBCL Tier 1)[DLBCL_genes#tier-1-dlbcl-genes], (FL Tier 1)[FL_genes#tier-1-fl-genes], (PMBL Tier 1)[PMBL_genes#tier-1-pmbl-genes], (MCL Tier 1)[MCL_genes#tier-1-mcl-genes], (MZL Tier 1)[MZL_genes#tier-1-mzl-genes]|
35
-|[USP7](USP7)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|(DLBCL Tier 2)[DLBCL_genes#tier-2-dlbcl-genes]|
36
-|[WNK1](WNK1)|Tier 1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|(DLBCL Tier 2)[DLBCL_genes#tier-2-dlbcl-genes], (MZL Tier 2)[MZL_genes#tier-2-mzl-genes]|
... ...
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0
+|[TP53](TP53)|Tier 1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)|[DLBCL Tier 1](DLBCL_genes#tier-1-dlbcl-genes), [FL Tier 1](FL_genes#tier-1-fl-genes), [PMBL Tier 1](PMBL_genes#tier-1-pmbl-genes), [MCL Tier 1](MCL_genes#tier-1-mcl-genes), [MZL Tier 1](MZL_genes#tier-1-mzl-genes)|
1
+|[USP7](USP7)|Tier 1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[DLBCL Tier 2](DLBCL_genes#tier-2-dlbcl-genes)|
2
+|[WNK1](WNK1)|Tier 1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[DLBCL Tier 2](DLBCL_genes#tier-2-dlbcl-genes), [MZL Tier 2](MZL_genes#tier-2-mzl-genes)|