ATR.md
... ...
@@ -45,6 +45,56 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/A
45 45
## ATR Expression
46 46
![](images/gene_expression/ATR_by_pathology.svg)
47 47
48
+## All Mutations
49
+
50
+[Reddy_2121T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2121T.html)
51
+[Reddy_2150T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2150T.html)
52
+[Reddy_2163T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2163T.html)
53
+[Reddy_2192T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2192T.html)
54
+[Reddy_2195T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2195T.html)
55
+[Reddy_2206T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2206T.html)
56
+[Reddy_2236T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2236T.html)
57
+[Reddy_2475T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2475T.html)
58
+[Reddy_2476T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2476T.html)
59
+[Reddy_2585T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2585T.html)
60
+[Reddy_2594T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2594T.html)
61
+[Reddy_2758T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2758T.html)
62
+[Reddy_2768T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2768T.html)
63
+[Reddy_2775T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2775T.html)
64
+[Reddy_2779T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2779T.html)
65
+[Reddy_2805T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2805T.html)
66
+[Reddy_2828T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2828T.html)
67
+[Reddy_2838T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2838T.html)
68
+[Reddy_2898T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2898T.html)
69
+[Reddy_2933T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2933T.html)
70
+[Reddy_2947T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2947T.html)
71
+[Reddy_3384T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3384T.html)
72
+[Reddy_3385T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3385T.html)
73
+[Reddy_3405T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3405T.html)
74
+[Reddy_3489T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3489T.html)
75
+[Reddy_3502T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3502T.html)
76
+[Reddy_3520T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3520T.html)
77
+[Reddy_3548T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3548T.html)
78
+[Reddy_3549T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3549T.html)
79
+[Reddy_3557T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3557T.html)
80
+[Reddy_3561T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3561T.html)
81
+[Reddy_3562T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3562T.html)
82
+[Reddy_3594T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3594T.html)
83
+[Reddy_3622T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3622T.html)
84
+[Reddy_3653T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3653T.html)
85
+[Reddy_3662T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3662T.html)
86
+[Reddy_3779T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3779T.html)
87
+[Reddy_3810T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3810T.html)
88
+[Reddy_3812T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3812T.html)
89
+[Reddy_3820T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3820T.html)
90
+[Reddy_3822T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3822T.html)
91
+[Reddy_3843T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3843T.html)
92
+[Reddy_3856T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3856T.html)
93
+[Reddy_3879T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3879T.html)
94
+[Reddy_3992T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3992T.html)
95
+[Reddy_705T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_705T.html)
96
+
97
+
48 98
## References
49 99
1. *Reddy A, Zhang J, Davis NS, Moffitt AB, Love CL, Waldrop A, Leppa S, Pasanen A, Meriranta L, Karjalainen-Lindsberg ML, Nørgaard P, Pedersen M, Gang AO, Høgdall E, Heavican TB, Lone W, Iqbal J, Qin Q, Li G, Kim SY, Healy J, Richards KL, Fedoriw Y, Bernal-Mizrachi L, Koff JL, Staton AD, Flowers CR, Paltiel O, Goldschmidt N, Calaminici M, Clear A, Gribben J, Nguyen E, Czader MB, Ondrejka SL, Collie A, Hsi ED, Tse E, Au-Yeung RKH, Kwong YL, Srivastava G, Choi WWL, Evens AM, Pilichowska M, Sengar M, Reddy N, Li S, Chadburn A, Gordon LI, Jaffe ES, Levy S, Rempel R, Tzeng T, Happ LE, Dave T, Rajagopalan D, Datta J, Dunson DB, Dave SS. Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma. Cell. 2017 Oct;171(2):481-494.e15.*
50 100
BRINP3.md
... ...
@@ -50,6 +50,62 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
50 50
## BRINP3 Expression
51 51
![](images/gene_expression/BRINP3_by_pathology.svg)
52 52
53
+## All Mutations
54
+
55
+[Reddy_2087T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2087T.html)
56
+[Reddy_2088T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2088T.html)
57
+[Reddy_2128T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2128T.html)
58
+[Reddy_2133T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2133T.html)
59
+[Reddy_2141T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2141T.html)
60
+[Reddy_2161T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2161T.html)
61
+[Reddy_2198T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2198T.html)
62
+[Reddy_2219T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2219T.html)
63
+[Reddy_2250T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2250T.html)
64
+[Reddy_2261T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2261T.html)
65
+[Reddy_2262T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2262T.html)
66
+[Reddy_2263T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2263T.html)
67
+[Reddy_2286T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2286T.html)
68
+[Reddy_2544T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2544T.html)
69
+[Reddy_2632T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2632T.html)
70
+[Reddy_2642T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2642T.html)
71
+[Reddy_2654T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2654T.html)
72
+[Reddy_2767T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2767T.html)
73
+[Reddy_2779T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2779T.html)
74
+[Reddy_2790T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2790T.html)
75
+[Reddy_2792T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2792T.html)
76
+[Reddy_2805T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2805T.html)
77
+[Reddy_2808T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2808T.html)
78
+[Reddy_2831T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2831T.html)
79
+[Reddy_2834T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2834T.html)
80
+[Reddy_2838T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2838T.html)
81
+[Reddy_2882T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2882T.html)
82
+[Reddy_2903T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2903T.html)
83
+[Reddy_2912T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2912T.html)
84
+[Reddy_2951T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2951T.html)
85
+[Reddy_3422T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3422T.html)
86
+[Reddy_3432T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3432T.html)
87
+[Reddy_3453T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3453T.html)
88
+[Reddy_3456T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3456T.html)
89
+[Reddy_3461T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3461T.html)
90
+[Reddy_3539T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3539T.html)
91
+[Reddy_3566T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3566T.html)
92
+[Reddy_3611T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3611T.html)
93
+[Reddy_3628T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3628T.html)
94
+[Reddy_3640T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3640T.html)
95
+[Reddy_3644T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3644T.html)
96
+[Reddy_3675T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3675T.html)
97
+[Reddy_3731T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3731T.html)
98
+[Reddy_3733T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3733T.html)
99
+[Reddy_3763T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3763T.html)
100
+[Reddy_3770T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3770T.html)
101
+[Reddy_3856T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3856T.html)
102
+[Reddy_3889T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3889T.html)
103
+[Reddy_3914T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3914T.html)
104
+[Reddy_3937T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3937T.html)
105
+[Reddy_3988T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3988T.html)
106
+[Reddy_3989T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3989T.html)
107
+[Reddy_695T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_695T.html)
108
+
53 109
## References
54 110
1. *Reddy A, Zhang J, Davis NS, Moffitt AB, Love CL, Waldrop A, Leppa S, Pasanen A, Meriranta L, Karjalainen-Lindsberg ML, Nørgaard P, Pedersen M, Gang AO, Høgdall E, Heavican TB, Lone W, Iqbal J, Qin Q, Li G, Kim SY, Healy J, Richards KL, Fedoriw Y, Bernal-Mizrachi L, Koff JL, Staton AD, Flowers CR, Paltiel O, Goldschmidt N, Calaminici M, Clear A, Gribben J, Nguyen E, Czader MB, Ondrejka SL, Collie A, Hsi ED, Tse E, Au-Yeung RKH, Kwong YL, Srivastava G, Choi WWL, Evens AM, Pilichowska M, Sengar M, Reddy N, Li S, Chadburn A, Gordon LI, Jaffe ES, Levy S, Rempel R, Tzeng T, Happ LE, Dave T, Rajagopalan D, Datta J, Dunson DB, Dave SS. Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma. Cell. 2017 Oct;171(2):481-494.e15.*
55 111
SETD5.md
... ...
@@ -61,7 +61,7 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S
61 61
62 62
![](primary/Reddy_SETD5_2.svg)
63 63
**Rating**
64
-★ ★ ★ ☆ ☆
64
+★ ★ ☆ ☆ ☆
65 65
66 66
67 67
## All Mutations
papers/reddyGeneticFunctionalDrivers2017.md
... ...
@@ -49,7 +49,6 @@ All other DLBCL studies, DLBCL Tier 2, 145
49 49
|Novel gene|DLBCL tier|Average variant quality|QC outcome|
50 50
|:-|:-:|:-:|:-:|
51 51
|[ARID5B](../ARID5B)|2 |★ ★ ★ ★ ☆|**Pass**|
52
-|[ANKRD17](../ANKRD17)|2 |★ ★ ★ ☆ ☆|**Fail**|
53 52
|[BTBD3](../BTBD3)|2 |★ ★ ★ ★ ☆|**Pass**|
54 53
|[SETD5](../SETD5)|2 |★ ★ ★ ☆ ☆|**Pass**|
55 54
|[ATR](../ATR)|2 |★ ★ ★ ☆ ☆|**Pass**|
... ...
@@ -72,6 +71,7 @@ All other DLBCL studies, DLBCL Tier 2, 145
72 71
|[FUBP1](../FUBP1)|2 |★ ★ ★ ☆ ☆|**Pass**|
73 72
|[GOLGA5](../GOLGA5)|2 |★ ★ ★ ☆ ☆|**Pass**|
74 73
|[MSH6](../MSH6)|2 |★ ★ ★ ☆ ☆|**Pass**|
74
+|[ANKRD17](../ANKRD17)|2 |★ ★ ★ ☆ ☆|**Fail**|
75 75
|[CDC73](../CDC73)|2 |★ ★ ☆ ☆ ☆|**Fail**|
76 76
|[CHD1](../CHD1)|2 |★ ★ ☆ ☆ ☆|**Fail**|
77 77
|[CHD8](../CHD8)|2 |★ ★ ☆ ☆ ☆|**Fail**|
papers/reddyGeneticFunctionalDrivers2017.pdf