COQ7.md
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@@ -53,4 +53,9 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
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<!-- ORIGIN: chapuyMolecularSubtypesDiffuse2018b -->
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<!-- DLBCL: chapuyMolecularSubtypesDiffuse2018b -->
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+## All Mutations
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+
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+[DLBCL-RICOVER_1032-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_1032-Tumor.html)
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+[DLBCL-RICOVER_181-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_181-Tumor.html)
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+
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## References
Home.md
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@@ -280,7 +280,7 @@ PMBL panel, Desch 2020, 10
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|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013)|WGS|DLBCL|9|7 (24%)|
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|[@reddyGeneticFunctionalDrivers2017](papers/reddyGeneticFunctionalDrivers2017)|Exome|DLBCL|6|29 (55%)|
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|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019)|Exome/RNA-seq|BL|4|22 (55%)|
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-|[@chapuyMolecularSubtypesDiffuse2018b](papers/chapuyMolecularSubtypesDiffuse2018b)|Exome|DLBCL|| TBD |
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+|[@chapuyMolecularSubtypesDiffuse2018b](papers/chapuyMolecularSubtypesDiffuse2018b)|Exome|DLBCL|2| TBD |
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|[@hubschmannMutationalMechanismsShaping2021b](papers/hubschmannMutationalMechanismsShaping2021b)|WGS|DLBCL,FL|4|3 (9%)|
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## Categorization of genes
papers/chapuyMolecularSubtypesDiffuse2018b.md
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@@ -6,9 +6,15 @@ bibliography: 'morinlab.bib'
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# @chapuyMolecularSubtypesDiffuse2018b
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## Summary of novel genes
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+|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail| Fail Rate|
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+|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
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+|DLBCL|19|2|17| || |
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+
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|Entity| Tier 1 genes| Tier 2 genes|
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|:-:|:-:|:-:|
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|DLBCL|2|17|
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+
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+
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```mermaid
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---
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config:
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@@ -39,8 +45,8 @@ All other DLBCL studies, DLBCL Tier 2, 181
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|[LTB](../LTB)|1 |
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### Tier 2
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-|New gene|DLBCL tier|
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-|:-|:-:|
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+|Novel Gene|BL tier|Average variant quality|QC outcome|
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+|:-|:-:|:-:|:-:|
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|[CCL4](../CCL4)|2 |
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|[COQ7](../COQ7)|2 |
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|[CRIP1](../CRIP1)|2 |
papers/morinMutationalStructuralAnalysis2013.pdf
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