papers/zhangGeneticHeterogeneityDiffuse2013.md
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@@ -6,9 +6,9 @@ bibliography: 'morinlab.bib'
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# @zhangGeneticHeterogeneityDiffuse2013
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## Summary of novel genes
8 8
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|11|8|
9
+|Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes|
10
+|:-:|:-:|:-:|:-:|
11
+|DLBCL|14|9|266|
12 12
```mermaid
13 13
---
14 14
config:
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@@ -22,12 +22,15 @@ config:
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, New Tier 1, 11
26
-New Tier 1, DLBCL Tier 1, 11
27
-This study, New Tier 2, 8
28
-New Tier 2, DLBCL Tier 2, 8
29
-All other DLBCL studies, DLBCL Tier 1, 117
30
-All other DLBCL studies, DLBCL Tier 2, 190
25
+This study, New Tier 1, 14
26
+New Tier 1, DLBCL Tier 1, 14
27
+This study, New Tier 2, 9
28
+New Tier 2, DLBCL Tier 2, 9
29
+This study, New Tier 3, 266
30
+New Tier 3, DLBCL Tier 3, 266
31
+All other DLBCL studies, DLBCL Tier 1, 113
32
+All other DLBCL studies, DLBCL Tier 2, 163
33
+All other DLBCL studies, DLBCL Tier 3, 115
31 34
```
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33 36
## Novel genes reported in this study
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@@ -36,20 +39,24 @@ All other DLBCL studies, DLBCL Tier 2, 190
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|New gene|DLBCL tier|
37 40
|:-|:-:|
38 41
|[ARID1A](../ARID1A)|1 |
42
+|[BCL7A](../BCL7A)|1 |
43
+|[DTX1](../DTX1)|1 |
39 44
|[FBXW7](../FBXW7)|1 |
40
-|[HIST1H3B](../HIST1H3B)|1 |
41 45
|[KLHL14](../KLHL14)|1 |
42 46
|[KMT2C](../KMT2C)|1 |
43 47
|[MGA](../MGA)|1 |
44 48
|[MTOR](../MTOR)|1 |
45
-|[POU2F2](../POU2F2)|1 |
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-|[SMARCA4](../SMARCA4)|1 |
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+|[NOTCH2](../NOTCH2)|1 |
50
+|[OSBPL10](../OSBPL10)|1 |
51
+|[RHOA](../RHOA)|1 |
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+|[TRRAP](../TRRAP)|1 |
47 53
|[ZNF292](../ZNF292)|1 |
48 54
|[ZNF608](../ZNF608)|1 |
49 55
50 56
### Tier 2
51 57
|New gene|DLBCL tier|
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|:-|:-:|
59
+|[BTBD3](../BTBD3)|2 |
53 60
|[INO80](../INO80)|2 |
54 61
|[JAK1](../JAK1)|2 |
55 62
|[JAK3](../JAK3)|2 |
... ...
@@ -59,6 +66,276 @@ All other DLBCL studies, DLBCL Tier 2, 190
59 66
|[UBR5](../UBR5)|2 |
60 67
|[ZEB2](../ZEB2)|2 |
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69
+### Tier 3
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+|New gene|DLBCL tier|
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+|:-|:-:|
72
+|[ABCA3](../ABCA3)|3 |
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+|[ABCA4](../ABCA4)|3 |
74
+|[ACE](../ACE)|3 |
75
+|[ACSM3](../ACSM3)|3 |
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+|[ACSS2](../ACSS2)|3 |
77
+|[ACSS3](../ACSS3)|3 |
78
+|[ACTN1](../ACTN1)|3 |
79
+|[ADAM2](../ADAM2)|3 |
80
+|[ADAMTS15](../ADAMTS15)|3 |
81
+|[ADH7](../ADH7)|3 |
82
+|[AFAP1L2](../AFAP1L2)|3 |
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+|[AMAC1](../AMAC1)|3 |
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+|[AMIGO3](../AMIGO3)|3 |
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+|[AMPH](../AMPH)|3 |
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+|[ANK2](../ANK2)|3 |
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+|[ANKRD17](../ANKRD17)|3 |
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+|[ANKRD44](../ANKRD44)|3 |
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+|[ANTXR1](../ANTXR1)|3 |
90
+|[AP1G2](../AP1G2)|3 |
91
+|[APBB1](../APBB1)|3 |
92
+|[APC](../APC)|3 |
93
+|[APOA5](../APOA5)|3 |
94
+|[APP](../APP)|3 |
95
+|[ATIC](../ATIC)|3 |
96
+|[ATP10A](../ATP10A)|3 |
97
+|[ATP1A2](../ATP1A2)|3 |
98
+|[ATP2A3](../ATP2A3)|3 |
99
+|[B4GALNT2](../B4GALNT2)|3 |
100
+|[BAZ1A](../BAZ1A)|3 |
101
+|[BCAT2](../BCAT2)|3 |
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+|[BLM](../BLM)|3 |
103
+|[BMPR1A](../BMPR1A)|3 |
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+|[BRCA2](../BRCA2)|3 |
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+|[BRD4](../BRD4)|3 |
106
+|[BSCL2](../BSCL2)|3 |
107
+|[BTAF1](../BTAF1)|3 |
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+|[C9](../C9)|3 |
109
+|[CAD](../CAD)|3 |
110
+|[CAPN5](../CAPN5)|3 |
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+|[CAPN7](../CAPN7)|3 |
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+|[CCDC132](../CCDC132)|3 |
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+|[CCDC46](../CCDC46)|3 |
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+|[CCDC97](../CCDC97)|3 |
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+|[CCNF](../CCNF)|3 |
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+|[CDC123](../CDC123)|3 |
117
+|[CDH10](../CDH10)|3 |
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+|[CDH7](../CDH7)|3 |
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+|[CDK3](../CDK3)|3 |
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+|[CECR1](../CECR1)|3 |
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+|[CELSR2](../CELSR2)|3 |
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+|[CHD3](../CHD3)|3 |
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+|[CHRM5](../CHRM5)|3 |
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+|[CIC](../CIC)|3 |
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+|[CNGA4](../CNGA4)|3 |
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+|[CNOT6](../CNOT6)|3 |
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+|[CNP](../CNP)|3 |
128
+|[CNTN6](../CNTN6)|3 |
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+|[COL5A2](../COL5A2)|3 |
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+|[CORO2A](../CORO2A)|3 |
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+|[CORO7](../CORO7)|3 |
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+|[CRELD2](../CRELD2)|3 |
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+|[CRTC3](../CRTC3)|3 |
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+|[CST7](../CST7)|3 |
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+|[CTNNA3](../CTNNA3)|3 |
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+|[CYP24A1](../CYP24A1)|3 |
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+|[CYP2C18](../CYP2C18)|3 |
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+|[DDB1](../DDB1)|3 |
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+|[DDX10](../DDX10)|3 |
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+|[DIAPH3](../DIAPH3)|3 |
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+|[DIP2B](../DIP2B)|3 |
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+|[DLGAP1](../DLGAP1)|3 |
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+|[DMXL1](../DMXL1)|3 |
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+|[DOCK2](../DOCK2)|3 |
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+|[DOLK](../DOLK)|3 |
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+|[DSC2](../DSC2)|3 |
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+|[DSCAML1](../DSCAML1)|3 |
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+|[DSG2](../DSG2)|3 |
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+|[DSP](../DSP)|3 |
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+|[DUOXA2](../DUOXA2)|3 |
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+|[DUPD1](../DUPD1)|3 |
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+|[DYNC1H1](../DYNC1H1)|3 |
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+|[DYNC1I1](../DYNC1I1)|3 |
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+|[ECGF1](../ECGF1)|3 |
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+|[EPHA3](../EPHA3)|3 |
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+|[EPHA5](../EPHA5)|3 |
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+|[EPHA7](../EPHA7)|3 |
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+|[ERBB3](../ERBB3)|3 |
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+|[ERN2](../ERN2)|3 |
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+|[EXTL3](../EXTL3)|3 |
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+|[FAM62C](../FAM62C)|3 |
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+|[FANCD2](../FANCD2)|3 |
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+|[FGD3](../FGD3)|3 |
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+|[FGFR1](../FGFR1)|3 |
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+|[FIGN](../FIGN)|3 |
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+|[FLNC](../FLNC)|3 |
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+|[FMO2](../FMO2)|3 |
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+|[FRMPD1](../FRMPD1)|3 |
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+|[GABRG1](../GABRG1)|3 |
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+|[GCN1L1](../GCN1L1)|3 |
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+|[GJA8](../GJA8)|3 |
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+|[GJB4](../GJB4)|3 |
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+|[GOPC](../GOPC)|3 |
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+|[GPD2](../GPD2)|3 |
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+|[GPR133](../GPR133)|3 |
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+|[GPR15](../GPR15)|3 |
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+|[GREM2](../GREM2)|3 |
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+|[GRIA2](../GRIA2)|3 |
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+|[GRM5](../GRM5)|3 |
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+|[H6PD](../H6PD)|3 |
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+|[HACE1](../HACE1)|3 |
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+|[HCK](../HCK)|3 |
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+|[HIPK3](../HIPK3)|3 |
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+|[HIST1H4I](../HIST1H4I)|3 |
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+|[HK3](../HK3)|3 |
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+|[HNRNPR](../HNRNPR)|3 |
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+|[HSF2](../HSF2)|3 |
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+|[IDH1](../IDH1)|3 |
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+|[INSC](../INSC)|3 |
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+|[INTS6](../INTS6)|3 |
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+|[IQGAP1](../IQGAP1)|3 |
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+|[IQUB](../IQUB)|3 |
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+|[ITGA2](../ITGA2)|3 |
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+|[ITGA8](../ITGA8)|3 |
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+|[ITGB3](../ITGB3)|3 |
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+|[JAG1](../JAG1)|3 |
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+|[JAKMIP2](../JAKMIP2)|3 |
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+|[KCNA3](../KCNA3)|3 |
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+|[KCNAB3](../KCNAB3)|3 |
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+|[KCNJ6](../KCNJ6)|3 |
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+|[KCNT2](../KCNT2)|3 |
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+|[KDR](../KDR)|3 |
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+|[KIF21B](../KIF21B)|3 |
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+|[KIT](../KIT)|3 |
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+|[KLB](../KLB)|3 |
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+|[KLC3](../KLC3)|3 |
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+|[KLF4](../KLF4)|3 |
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+|[KRT6A](../KRT6A)|3 |
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+|[LEPREL1](../LEPREL1)|3 |
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+|[LIFR](../LIFR)|3 |
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+|[LILRA2](../LILRA2)|3 |
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+|[LIN7C](../LIN7C)|3 |
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+|[LPHN2](../LPHN2)|3 |
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+|[LRAP](../LRAP)|3 |
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+|[LRIG3](../LRIG3)|3 |
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+|[LRP1](../LRP1)|3 |
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+|[LRP10](../LRP10)|3 |
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+|[LRP1B](../LRP1B)|3 |
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+|[LRP3](../LRP3)|3 |
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+|[LRRN3](../LRRN3)|3 |
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+|[LYST](../LYST)|3 |
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+|[MARCHF7](../MARCHF7)|3 |
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+|[MBL2](../MBL2)|3 |
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+|[MED13L](../MED13L)|3 |
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+|[MIB1](../MIB1)|3 |
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+|[MN1](../MN1)|3 |
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+|[MORC2](../MORC2)|3 |
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+|[MPL](../MPL)|3 |
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+|[MTMR3](../MTMR3)|3 |
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+|[MYL7](../MYL7)|3 |
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+|[MYO5C](../MYO5C)|3 |
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+|[MYRIP](../MYRIP)|3 |
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+|[NDUFS1](../NDUFS1)|3 |
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+|[NELL2](../NELL2)|3 |
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+|[NFIB](../NFIB)|3 |
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+|[NFX1](../NFX1)|3 |
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+|[NGFR](../NGFR)|3 |
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+|[NIPBL](../NIPBL)|3 |
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+|[NLGN2](../NLGN2)|3 |
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+|[NLRP7](../NLRP7)|3 |
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+|[NPHP1](../NPHP1)|3 |
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+|[NPY2R](../NPY2R)|3 |
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+|[NRXN2](../NRXN2)|3 |
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+|[NSD1](../NSD1)|3 |
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+|[ONECUT1](../ONECUT1)|3 |
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+|[PADI1](../PADI1)|3 |
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+|[PAPPA2](../PAPPA2)|3 |
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+|[PBX1](../PBX1)|3 |
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+|[PCCB](../PCCB)|3 |
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+|[PCDE1C](../PCDE1C)|3 |
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+|[PCDH7](../PCDH7)|3 |
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+|[PCDHB1](../PCDHB1)|3 |
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+|[PCDHB15](../PCDHB15)|3 |
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+|[PCDHB3](../PCDHB3)|3 |
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+|[PCDHB5](../PCDHB5)|3 |
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+|[PCDHGA2](../PCDHGA2)|3 |
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+|[PDGFRA](../PDGFRA)|3 |
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+|[PDIA2](../PDIA2)|3 |
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+|[PDZRN3](../PDZRN3)|3 |
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+|[PDZRN4](../PDZRN4)|3 |
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+|[PIK3CD](../PIK3CD)|3 |
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+|[PLA2G4B](../PLA2G4B)|3 |
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+|[PLEKHA7](../PLEKHA7)|3 |
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+|[PNLIPRP1](../PNLIPRP1)|3 |
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+|[PNPT1](../PNPT1)|3 |
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+|[POLE](../POLE)|3 |
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+|[PPARGC1A](../PPARGC1A)|3 |
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+|[PPWD1](../PPWD1)|3 |
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+|[PRDM16](../PRDM16)|3 |
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+|[PRKCB1](../PRKCB1)|3 |
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+|[PRKCQ](../PRKCQ)|3 |
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+|[PROS1](../PROS1)|3 |
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+|[PRSS7](../PRSS7)|3 |
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+|[PTPN14](../PTPN14)|3 |
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+|[PTPRF](../PTPRF)|3 |
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+|[PTPRT](../PTPRT)|3 |
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+|[PXK](../PXK)|3 |
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+|[RAB3GAP1](../RAB3GAP1)|3 |
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+|[RAPGEF2](../RAPGEF2)|3 |
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+|[RBM15B](../RBM15B)|3 |
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+|[RELN](../RELN)|3 |
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+|[RFC1](../RFC1)|3 |
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+|[ROR2](../ROR2)|3 |
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+|[RSL1D1](../RSL1D1)|3 |
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+|[RUNDC1](../RUNDC1)|3 |
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+|[RYR1](../RYR1)|3 |
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+|[SAPS3](../SAPS3)|3 |
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+|[SCYL1](../SCYL1)|3 |
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+|[SEMA3A](../SEMA3A)|3 |
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+|[SEMA5A](../SEMA5A)|3 |
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+|[SERINC2](../SERINC2)|3 |
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+|[SH3PXD2B](../SH3PXD2B)|3 |
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+|[SHMT2](../SHMT2)|3 |
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+|[SIGLEC10](../SIGLEC10)|3 |
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+|[SLC16A7](../SLC16A7)|3 |
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+|[SLC4A8](../SLC4A8)|3 |
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+|[SLC5A1](../SLC5A1)|3 |
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+|[SLC9A5](../SLC9A5)|3 |
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+|[SMEK1](../SMEK1)|3 |
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+|[SOX6](../SOX6)|3 |
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+|[SPEG](../SPEG)|3 |
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+|[SPTBN1](../SPTBN1)|3 |
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+|[ST8SIA3](../ST8SIA3)|3 |
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+|[SULF2](../SULF2)|3 |
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+|[TAF1L](../TAF1L)|3 |
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+|[TAF4B](../TAF4B)|3 |
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+|[THBS4](../THBS4)|3 |
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+|[TIMM50](../TIMM50)|3 |
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+|[TLN2](../TLN2)|3 |
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+|[TMC1](../TMC1)|3 |
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+|[TMEM161A](../TMEM161A)|3 |
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+|[TMEM16E](../TMEM16E)|3 |
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+|[TMEM63A](../TMEM63A)|3 |
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+|[TPRKB](../TPRKB)|3 |
315
+|[TRIM37](../TRIM37)|3 |
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+|[TRIP11](../TRIP11)|3 |
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+|[TSC2](../TSC2)|3 |
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+|[TSHZ2](../TSHZ2)|3 |
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+|[UHRF1BP1L](../UHRF1BP1L)|3 |
320
+|[UNC13B](../UNC13B)|3 |
321
+|[UQCRC1](../UQCRC1)|3 |
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+|[VPS13A](../VPS13A)|3 |
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+|[WDR65](../WDR65)|3 |
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+|[WDR66](../WDR66)|3 |
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+|[WDR67](../WDR67)|3 |
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+|[WIF1](../WIF1)|3 |
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+|[WNK4](../WNK4)|3 |
328
+|[WT1](../WT1)|3 |
329
+|[XDH](../XDH)|3 |
330
+|[ZIC4](../ZIC4)|3 |
331
+|[ZNF366](../ZNF366)|3 |
332
+|[ZNF439](../ZNF439)|3 |
333
+|[ZNF474](../ZNF474)|3 |
334
+|[ZNF700](../ZNF700)|3 |
335
+|[ZNF790](../ZNF790)|3 |
336
+|[ZNF91](../ZNF91)|3 |
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+|[ZP1](../ZP1)|3 |
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+
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# Details
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