Changes in c485284: add origin

				BACH2.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BACH2.svg)

           ## BACH2 Expression

           ![image](images/gene_expression/BACH2_by_pathology.svg)

          +<!-- ORIGIN: grandeGenomewideDiscoverySomatic2019 -->

				BCL11A.md
			
          @@ -62,3 +62,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           1. *Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, Liu H, Price HP, Gesk S, Steinemann D, Schlegelberger B, Oscier DG, Siebert R, Tucker PW, Dyer MJ. The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Blood. 2001 Dec 1;98(12):3413-20. doi: 10.1182/blood.v98.12.3413. PMID: 11719382.*

           ## BCL11A Expression

           ![image](images/gene_expression/BCL11A_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				BCL2.md
			
          @@ -74,3 +74,4 @@ and BCL2 rearrangements-an LLMPP study. Blood. 2024. Epub May 3.*

           3. *Singh K, Briggs JM. Functional Implications of the spectrum of BCL2 mutations in Lymphoma. Mutat Res Rev Mutat Res. 2016 Jul-Sep;769:1-18. doi: 10.1016/j.mrrev.2016.06.001. Epub 2016 Jun 16. PMID: 27543313.*

           ## BCL2 Expression

           ![image](images/gene_expression/BCL2_by_pathology.svg)

          +<!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

				BCL2L11.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BCL2L11.svg)

           ## BCL2L11 Expression

           ![image](images/gene_expression/BCL2L11_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				BCOR.md
			
          @@ -52,3 +52,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           2. *Nadeu F, Martin-Garcia D, Clot G, Díaz-Navarro A, Duran-Ferrer M, Navarro A, Vilarrasa-Blasi R, Kulis M, Royo R, Gutiérrez-Abril J, Valdés-Mas R, López C, Chapaprieta V, Puiggros M, Castellano G, Costa D, Aymerich M, Jares P, Espinet B, Muntañola A, Ribera-Cortada I, Siebert R, Colomer D, Torrents D, Gine E, López-Guillermo A, Küppers R, Martin-Subero JI, Puente XS, Beà S, Campo E. Genomic and epigenomic insights into the origin, pathogenesis, and clinical behavior of mantle cell lymphoma subtypes. Blood. 2020 Sep 17;136(12):1419-1432. doi: 10.1182/blood.2020005289. PMID: 32584970; PMCID: PMC7498364.*

           ## BCOR Expression

           ![image](images/gene_expression/BCOR_by_pathology.svg)

          +<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->

				BCR.md
			
          @@ -58,3 +58,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BCR.svg)

           ## BCR Expression

           ![image](images/gene_expression/BCR_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				BLK.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BLK.svg)

           ## BLK Expression

           ![image](images/gene_expression/BLK_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				BMP7.md
			
          @@ -57,3 +57,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BMP7.svg)

           ## BMP7 Expression

           ![image](images/gene_expression/BMP7_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				BRD4.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B

           ![image](images/proteinpaint/BRD4.svg)

           ## BRD4 Expression

           ![image](images/gene_expression/BRD4_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				C6orf27.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/C6orf27.svg)

           ## C6orf27 Expression

           ![image](images/gene_expression/C6orf27_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CAD.md
			
          @@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CAD.svg)

           ## CAD Expression

           ![image](images/gene_expression/CAD_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CARD4.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CARD4.svg)

           ## CARD4 Expression

           ![image](images/gene_expression/CARD4_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CCDC42BPB.md
			
          @@ -28,3 +28,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CCDC42BPB.svg)

           ## CCDC42BPB Expression

           ![image](images/gene_expression/CCDC42BPB_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				CCND1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CCND1.svg)

           ## CCND1 Expression

           ![image](images/gene_expression/CCND1_by_pathology.svg)

          +<!-- ORIGIN: beaLandscapeSomaticMutations2013 -->

				CCNF.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CCNF.svg)

           ## CCNF Expression

           ![image](images/gene_expression/CCNF_by_pathology.svg)

          +<!-- ORIGIN: abateDistinctViralMutational2015a -->

				CCT6B.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CCT6B.svg)

           ## CCT6B Expression

           ![image](images/gene_expression/CCT6B_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CD274.md
			
          @@ -38,9 +38,12 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CD274.svg)

          +

          +## CD274 Expression

          +![image](images/gene_expression/CD274_by_pathology.svg)

          +

           ## References

           1. *Huang RSP, Decker B, Murugesan K, Hiemenz M, Mata DA, Li G, Creeden J, Ramkissoon SH, Ross JS. Pan-cancer analysis of CD274 (PD-L1) mutations in 314,631 patient samples and subset correlation with PD-L1 protein expression. J Immunother Cancer. 2021 Jun;9(6):e002558. doi: 10.1136/jitc-2021-002558. PMID: 34130989; PMCID: PMC8207995.*

          -2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## CD274 Expression

          -![image](images/gene_expression/CD274_by_pathology.svg)

          +2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*

           <!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

				CD79A.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CD79A.svg)

           ## CD79A Expression

           ![image](images/gene_expression/CD79A_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				CD83.md
			
          @@ -50,9 +50,11 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CD83.svg)

          +## CD83 Expression

          +![image](images/gene_expression/CD83_by_pathology.svg)

          +

           ## References

           1. *Lechmann M, Zinser E, Golka A, Steinkasserer A. Role of CD83 in the immunomodulation of dendritic cells. Int Arch Allergy Immunol. 2002 Oct;129(2):113-8. doi: 10.1159/000065883. PMID: 12403928.*

           2. *Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.*

          -3. *Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.*## CD83 Expression

          -![image](images/gene_expression/CD83_by_pathology.svg)

          +3. *Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.*

           <!-- ORIGIN: morinMutationalStructuralAnalysis2013 -->

				CDH17.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CDH17.svg)

           ## CDH17 Expression

           ![image](images/gene_expression/CDH17_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CDH8.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CDH8.svg)

           ## CDH8 Expression

           ![image](images/gene_expression/CDH8_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				CDKN2C.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CDKN2C.svg)

           ## CDKN2C Expression

           ![image](images/gene_expression/CDKN2C_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				CHD4.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CHD4.svg)

           ## CHD4 Expression

           ![image](images/gene_expression/CHD4_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				CILP.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CILP.svg)

           ## CILP Expression

           ![image](images/gene_expression/CILP_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				COL11A1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/COL11A1.svg)

           ## COL11A1 Expression

           ![image](images/gene_expression/COL11A1_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				COL16A1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/COL16A1.svg)

           ## COL16A1 Expression

           ![image](images/gene_expression/COL16A1_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				COL4A2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/COL4A2.svg)

           ## COL4A2 Expression

           ![image](images/gene_expression/COL4A2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CPNE8.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CPNE8.svg)

           ## CPNE8 Expression

           ![image](images/gene_expression/CPNE8_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				CPXM2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CPXM2.svg)

           ## CPXM2 Expression

           ![image](images/gene_expression/CPXM2_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				CTCF.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CTCF.svg)

           ## CTCF Expression

           ![image](images/gene_expression/CTCF_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				CTNNA2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CTNNA2.svg)

           ## CTNNA2 Expression

           ![image](images/gene_expression/CTNNA2_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				CTSS.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CTSS.svg)

           ## CTSS Expression

           ![image](images/gene_expression/CTSS_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				CYB5D1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CYB5D1.svg)

           ## CYB5D1 Expression

           ![image](images/gene_expression/CYB5D1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				CYP2A6.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CYP2A6.svg)

           ## CYP2A6 Expression

           ![image](images/gene_expression/CYP2A6_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				CYP4F22.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C

           ![image](images/proteinpaint/CYP4F22.svg)

           ## CYP4F22 Expression

           ![image](images/gene_expression/CYP4F22_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				DAZAP1.md
			
          @@ -28,10 +28,6 @@ This gene has some recurrent sites of mutations (hot spots). The mutation patter

           |FL    |No  |No                   |0               |53.351          |

          -> [!NOTE]

          -> First described in MCL in 2020 by [Pararajalingam P](https://pubmed.ncbi.nlm.nih.gov/32160292)

          -

          -

            ## DAZAP1 Hotspots

           | Chromosome |Coordinate (hg19) | ref>alt | HGVSp | 

          @@ -50,7 +46,9 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DAZAP1.svg)

          -## References

          -1. *Pararajalingam P, Coyle KM, Arthur SE, Thomas N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C, Slack GW, Mungall AJ, Tam CS, Agarwal R, Dawson SJ, Lenz G, Balasubramanian S, Gascoyne RD, Steidl C, Connors J, Villa D, Audas TE, Marra MA, Johnson NA, Scott DW, Morin RD. Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing. Blood. 2020 Jul 30;136(5):572-584. doi: 10.1182/blood.2019002385. PMID: 32160292; PMCID: PMC7440974.*## DAZAP1 Expression

          +## DAZAP1 Expression

           ![image](images/gene_expression/DAZAP1_by_pathology.svg)

          +

          +## References

          +1. *Pararajalingam P, Coyle KM, Arthur SE, Thomas N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C, Slack GW, Mungall AJ, Tam CS, Agarwal R, Dawson SJ, Lenz G, Balasubramanian S, Gascoyne RD, Steidl C, Connors J, Villa D, Audas TE, Marra MA, Johnson NA, Scott DW, Morin RD. Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing. Blood. 2020 Jul 30;136(5):572-584. doi: 10.1182/blood.2019002385. PMID: 32160292; PMCID: PMC7440974.*

           <!-- ORIGIN: pararajalingamCodingNoncodingDrivers2020 -->

				DHDH.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DHDH.svg)

           ## DHDH Expression

           ![image](images/gene_expression/DHDH_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				DHX15.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DHX15.svg)

           ## DHX15 Expression

           ![image](images/gene_expression/DHX15_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				DLC1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DLC1.svg)

           ## DLC1 Expression

           ![image](images/gene_expression/DLC1_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				DLGAP1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DLGAP1.svg)

           ## DLGAP1 Expression

           ![image](images/gene_expression/DLGAP1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				DNMT1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D

           ![image](images/proteinpaint/DNMT1.svg)

           ## DNMT1 Expression

           ![image](images/gene_expression/DNMT1_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				E2F2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/E2F2.svg)

           ## E2F2 Expression

           ![image](images/gene_expression/E2F2_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				EDNRB.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EDNRB.svg)

           ## EDNRB Expression

           ![image](images/gene_expression/EDNRB_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				EHD1.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EHD1.svg)

           ## EHD1 Expression

           ![image](images/gene_expression/EHD1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				EIF2AK3.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EIF2AK3.svg)

           ## EIF2AK3 Expression

           ![image](images/gene_expression/EIF2AK3_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				EIF2AK4.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EIF2AK4.svg)

           ## EIF2AK4 Expression

           ![image](images/gene_expression/EIF2AK4_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				EIF2C4.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EIF2C4.svg)

           ## EIF2C4 Expression

           ![image](images/gene_expression/EIF2C4_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				EIF4A1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EIF4A1.svg)

           ## EIF4A1 Expression

           ![image](images/gene_expression/EIF4A1_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				EML2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EML2.svg)

           ## EML2 Expression

           ![image](images/gene_expression/EML2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				ENTPD3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/ENTPD3.svg)

           ## ENTPD3 Expression

           ![image](images/gene_expression/ENTPD3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				EPHB2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EPHB2.svg)

           ## EPHB2 Expression

           ![image](images/gene_expression/EPHB2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				EPPK1.md
			
          @@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EPPK1.svg)

           ## EPPK1 Expression

           ![image](images/gene_expression/EPPK1_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				ERAP1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/ERAP1.svg)

           ## ERAP1 Expression

           ![image](images/gene_expression/ERAP1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				ESX1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/ESX1.svg)

           ## ESX1 Expression

           ![image](images/gene_expression/ESX1_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				ETS1.md
			
          @@ -36,10 +36,6 @@ ETS1 is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ashm) 

           |chr11   |128339774 |128345731|[intron](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr11%3A128339774%2D128345731)|enhancer          |

           |chr11   |128388492 |128394163|[TSS-2](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr11%3A128388492%2D128394163) |active_promoter   |

          -> [!NOTE]

          -> First described in BL in 2019 by [Panea RI](https://pubmed.ncbi.nlm.nih.gov/31558468). First described in DLBCL in 2011 by [Morin RD](https://pubmed.ncbi.nlm.nih.gov/21796119)

          -

          -

            ## ETS1 Hotspots

           | Chromosome |Coordinate (hg19) | ref>alt | HGVSp | 

          @@ -72,7 +68,10 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/ETS1.svg)

          -## References

          -1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## ETS1 Expression

          +## ETS1 Expression

           ![image](images/gene_expression/ETS1_by_pathology.svg)

          +

          +## References

          +1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*

          +

           <!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

				EWSR1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EWSR1.svg)

           ## EWSR1 Expression

           ![image](images/gene_expression/EWSR1_by_pathology.svg)

          +<!-- ORIGIN: pararajalingamCodingNoncodingDrivers2020 -->

				EXOSC6.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EXOSC6.svg)

           ## EXOSC6 Expression

           ![image](images/gene_expression/EXOSC6_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				EZH2.md
			
          @@ -60,11 +60,14 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EZH2.svg)

          +## EZH2 Expression

          +![image](images/gene_expression/EZH2_by_pathology.svg)

          +

           ## References

           1. *Morin RD, Johnson NA, Severson TM, Mungall AJ, An J, Goya R, Paul JE, Boyle M, Woolcock BW, Kuchenbauer F, Yap D, Humphries RK, Griffith OL, Shah S, Zhu H, Kimbara M, Shashkin P, Charlot JF, Tcherpakov M, Corbett R, Tam A, Varhol R, Smailus D, Moksa M, Zhao Y, Delaney A, Qian H, Birol I, Schein J, Moore R, Holt R, Horsman DE, Connors JM, Jones S, Aparicio S, Hirst M, Gascoyne RD, Marra MA. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat Genet. 2010 Feb;42(2):181-5. doi: 10.1038/ng.518. Epub 2010 Jan 17. PMID: 20081860; PMCID: PMC2850970.*

           2. *Yap DB, Chu J, Berg T, Schapira M, Cheng SW, Moradian A, Morin RD, Mungall AJ, Meissner B, Boyle M, Marquez VE, Marra MA, Gascoyne RD, Humphries RK, Arrowsmith CH, Morin GB, Aparicio SA. Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation. Blood. 2011 Feb 24;117(8):2451-9. doi: 10.1182/blood-2010-11-321208. Epub 2010 Dec 29. PMID: 21190999; PMCID: PMC3062411.*

           3. *Morin RD, Arthur SE, Assouline S. Treating lymphoma is now a bit EZ-er. Blood Adv. 2021 Apr 27;5(8):2256-2263. doi: 10.1182/bloodadvances.2020002773. PMID: 33904892; PMCID: PMC8095133.*

          -4. *Thomas N, Dreval K, Gerhard DS, Hilton LK, Abramson JS, Ambinder RF, Barta S, Bartlett NL, Bethony J, Bhatia K, Bowen J, Bryan AC, Cesarman E, Casper C, Chadburn A, Cruz M, Dittmer DP, Dyer MA, Farinha P, Gastier-Foster JM, Gerrie AS, Grande BM, Greiner T, Griner NB, Gross TG, Harris NL, Irvin JD, Jaffe ES, Henry D, Huppi R, Leal FE, Lee MS, Martin JP, Martin MR, Mbulaiteye SM, Mitsuyasu R, Morris V, Mullighan CG, Mungall AJ, Mungall K, Mutyaba I, Nokta M, Namirembe C, Noy A, Ogwang MD, Omoding A, Orem J, Ott G, Petrello H, Pittaluga S, Phelan JD, Ramos JC, Ratner L, Reynolds SJ, Rubinstein PG, Sissolak G, Slack G, Soudi S, Swerdlow SH, Traverse-Glehen A, Wilson WH, Wong J, Yarchoan R, ZenKlusen JC, Marra MA, Staudt LM, Scott DW, Morin RD. Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma. Blood. 2023 Feb 23;141(8):904-916. doi: 10.1182/blood.2022016534. PMID: 36201743; PMCID: PMC10023728.*## EZH2 Expression

          -![image](images/gene_expression/EZH2_by_pathology.svg)

          +4. *Thomas N, Dreval K, Gerhard DS, Hilton LK, Abramson JS, Ambinder RF, Barta S, Bartlett NL, Bethony J, Bhatia K, Bowen J, Bryan AC, Cesarman E, Casper C, Chadburn A, Cruz M, Dittmer DP, Dyer MA, Farinha P, Gastier-Foster JM, Gerrie AS, Grande BM, Greiner T, Griner NB, Gross TG, Harris NL, Irvin JD, Jaffe ES, Henry D, Huppi R, Leal FE, Lee MS, Martin JP, Martin MR, Mbulaiteye SM, Mitsuyasu R, Morris V, Mullighan CG, Mungall AJ, Mungall K, Mutyaba I, Nokta M, Namirembe C, Noy A, Ogwang MD, Omoding A, Orem J, Ott G, Petrello H, Pittaluga S, Phelan JD, Ramos JC, Ratner L, Reynolds SJ, Rubinstein PG, Sissolak G, Slack G, Soudi S, Swerdlow SH, Traverse-Glehen A, Wilson WH, Wong J, Yarchoan R, ZenKlusen JC, Marra MA, Staudt LM, Scott DW, Morin RD. Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma. Blood. 2023 Feb 23;141(8):904-916. doi: 10.1182/blood.2022016534. PMID: 36201743; PMCID: PMC10023728.*

          +

           <!-- ORIGIN: morinSomaticMutationsAltering2010 -->

				EZR.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E

           ![image](images/proteinpaint/EZR.svg)

           ## EZR Expression

           ![image](images/gene_expression/EZR_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FAM102A.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FAM102A.svg)

           ## FAM102A Expression

           ![image](images/gene_expression/FAM102A_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FAM129B.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FAM129B.svg)

           ## FAM129B Expression

           ![image](images/gene_expression/FAM129B_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				FANK1.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FANK1.svg)

           ## FANK1 Expression

           ![image](images/gene_expression/FANK1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FBXW7.md
			
          @@ -40,3 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           2. *King, B., Trimarchi, T., Reavie, L., Xu, L., Mullenders, J., Ntziachristos, P., Aranda-Orgilles, B., Pérez-García, A., Shi, J., Vakoc, C., Sandy, P., Shen, S., Ferrando, A., & Aifantis, I. (2013). The Ubiquitin Ligase FBXW7 Modulates Leukemia-Initiating Cell Activity by Regulating MYC Stability. Cell, 153, 1552-1566. https://doi.org/10.1016/j.cell.2013.05.041.*

           ## FBXW7 Expression

           ![image](images/gene_expression/FBXW7_by_pathology.svg)

          +<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->

				FCRL3.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FCRL3.svg)

           ## FCRL3 Expression

           ![image](images/gene_expression/FCRL3_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FGFR3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FGFR3.svg)

           ## FGFR3 Expression

           ![image](images/gene_expression/FGFR3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				FIP1L1.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FIP1L1.svg)

           ## FIP1L1 Expression

           ![image](images/gene_expression/FIP1L1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FLYWCH1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FLYWCH1.svg)

           ## FLYWCH1 Expression

           ![image](images/gene_expression/FLYWCH1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				FNBP1.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FNBP1.svg)

           ## FNBP1 Expression

           ![image](images/gene_expression/FNBP1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				FTCD.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FTCD.svg)

           ## FTCD Expression

           ![image](images/gene_expression/FTCD_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				FZD3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FZD3.svg)

           ## FZD3 Expression

           ![image](images/gene_expression/FZD3_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				FZR1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FZR1.svg)

           ## FZR1 Expression

           ![image](images/gene_expression/FZR1_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				GBP7.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GBP7.svg)

           ## GBP7 Expression

           ![image](images/gene_expression/GBP7_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				GGTLA4.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GGTLA4.svg)

           ## GGTLA4 Expression

           ![image](images/gene_expression/GGTLA4_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				GNA13.md
			
          @@ -54,9 +54,12 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GNA13.svg)

          +

          +## GNA13 Expression

          +![image](images/gene_expression/GNA13_by_pathology.svg)

          +

           ## References

           1. *Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.*

           2. *Muppidi JR, Schmitz R, Green JA, Xiao W, Larsen AB, Braun SE, An J, Xu Y, Rosenwald A, Ott G, Gascoyne RD, Rimsza LM, Campo E, Jaffe ES, Delabie J, Smeland EB, Braziel RM, Tubbs RR, Cook JR, Weisenburger DD, Chan WC, Vaidehi N, Staudt LM, Cyster JG. Loss of signalling via Gα13 in germinal centre B-cell-derived lymphoma. Nature. 2014 Dec 11;516(7530):254-8. doi: 10.1038/nature13765. Epub 2014 Sep 28. PMID: 25274307; PMCID: PMC4267955.*

          -3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## GNA13 Expression

          -![image](images/gene_expression/GNA13_by_pathology.svg)

          +3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*

           <!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

				GRIK5.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GRIK5.svg)

           ## GRIK5 Expression

           ![image](images/gene_expression/GRIK5_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				GRIN2A.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GRIN2A.svg)

           ## GRIN2A Expression

           ![image](images/gene_expression/GRIN2A_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				GRM6.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GRM6.svg)

           ## GRM6 Expression

           ![image](images/gene_expression/GRM6_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				GTSE1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G

           ![image](images/proteinpaint/GTSE1.svg)

           ## GTSE1 Expression

           ![image](images/gene_expression/GTSE1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				HEPH.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HEPH.svg)

           ## HEPH Expression

           ![image](images/gene_expression/HEPH_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				HIST1H1B.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H1B.svg)

           ## HIST1H1B Expression

           ![image](images/gene_expression/HIST1H1B_by_pathology.svg)

          +<!-- ORIGIN: chapuyMolecularSubtypesDiffuse2018b -->

				HIST1H1E.md
			
          @@ -67,3 +67,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H1E.svg)

           ## HIST1H1E Expression

           ![image](images/gene_expression/HIST1H1E_by_pathology.svg)

          +<!-- ORIGIN: morinMutationalStructuralAnalysis2013 -->

				HIST1H2AM.md
			
          @@ -73,3 +73,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H2AM.svg)

           ## HIST1H2AM Expression

           ![image](images/gene_expression/HIST1H2AM_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H2BD.md
			
          @@ -29,3 +29,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H2BD.svg)

           ## HIST1H2BD Expression

           ![image](images/gene_expression/HIST1H2BD_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HIST1H2BG.md
			
          @@ -29,3 +29,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H2BG.svg)

           ## HIST1H2BG Expression

           ![image](images/gene_expression/HIST1H2BG_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HIST1H2BK.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H2BK.svg)

           ## HIST1H2BK Expression

           ![image](images/gene_expression/HIST1H2BK_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H2BM.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H2BM.svg)

           ## HIST1H2BM Expression

           ![image](images/gene_expression/HIST1H2BM_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				HIST1H3B.md
			
          @@ -47,3 +47,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3B.svg)

           ## HIST1H3B Expression

           ![image](images/gene_expression/HIST1H3B_by_pathology.svg)

          +<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->

				HIST1H3D.md
			
          @@ -44,3 +44,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3D.svg)

           ## HIST1H3D Expression

           ![image](images/gene_expression/HIST1H3D_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H3G.md
			
          @@ -31,3 +31,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3G.svg)

           ## HIST1H3G Expression

           ![image](images/gene_expression/HIST1H3G_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HIST1H3H.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3H.svg)

           ## HIST1H3H Expression

           ![image](images/gene_expression/HIST1H3H_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H3I.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3I.svg)

           ## HIST1H3I Expression

           ![image](images/gene_expression/HIST1H3I_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H3J.md
			
          @@ -44,3 +44,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H3J.svg)

           ## HIST1H3J Expression

           ![image](images/gene_expression/HIST1H3J_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST1H4J.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST1H4J.svg)

           ## HIST1H4J Expression

           ![image](images/gene_expression/HIST1H4J_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				HIST2H2BE.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HIST2H2BE.svg)

           ## HIST2H2BE Expression

           ![image](images/gene_expression/HIST2H2BE_by_pathology.svg)

          +<!-- ORIGIN: schmitzGeneticsPathogenesisDiffuse2018a -->

				HLA-A.md
			
          @@ -50,3 +50,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*

           ## HLA-A Expression

           ![image](images/gene_expression/HLA-A_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HLA-B.md
			
          @@ -54,6 +54,10 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HLA-B.svg)

          -## References

          -1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*## HLA-B Expression

          +## HLA-B Expression

           ![image](images/gene_expression/HLA-B_by_pathology.svg)

          +

          +## References

          +1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*

          +

          +<!-- ORIGIN: Unknown -->

				HLA-C.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HLA-C.svg)

           ## HLA-C Expression

           ![image](images/gene_expression/HLA-C_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HLA-DMA.md
			
          @@ -40,3 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				HLA-DMB.md
			
          @@ -40,3 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HLA-DMB.svg)

           ## HLA-DMB Expression

           ![image](images/gene_expression/HLA-DMB_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				HLA-DQB1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           ![image](images/proteinpaint/HLA-DQB1.svg)

           ## HLA-DQB1 Expression

           ![image](images/gene_expression/HLA-DQB1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				HNRNPD.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				HVCN1.md
			
          @@ -54,3 +54,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H

           1. *Krysiak, K., Gomez, F., White, B., Matlock, M., Miller, C., Trani, L., Fronick, C., Fulton, R., Kreisel, F., Cashen, A., Carson, K., Berrien-Elliott, M., Bartlett, N., Griffith, M., Griffith, O., & Fehniger, T. (2017). Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma.. Blood, 129 4, 473-483 . https://doi.org/10.1182/blood-2016-07-729954.*

           ## HVCN1 Expression

           ![image](images/gene_expression/HVCN1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				ICK.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I

           ![image](images/proteinpaint/ICK.svg)

           ## ICK Expression

           ![image](images/gene_expression/ICK_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				IGLL5.md
			
          @@ -48,3 +48,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I

           ![image](images/proteinpaint/IGLL5.svg)

           ## IGLL5 Expression

           ![image](images/gene_expression/IGLL5_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				IL16.md
			
          @@ -40,3 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				IRAG2.md
			
          @@ -21,3 +21,4 @@

           ## IRAG2 Expression

           ![image](images/gene_expression/IRAG2_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				ITPR3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I

           ![image](images/proteinpaint/ITPR3.svg)

           ## ITPR3 Expression

           ![image](images/gene_expression/ITPR3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				JUP.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/J

           ![image](images/proteinpaint/JUP.svg)

           ## JUP Expression

           ![image](images/gene_expression/JUP_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				KCNK10.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KCNK10.svg)

           ## KCNK10 Expression

           ![image](images/gene_expression/KCNK10_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				KIFC3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KIFC3.svg)

           ## KIFC3 Expression

           ![image](images/gene_expression/KIFC3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				KIR3DL1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KIR3DL1.svg)

           ## KIR3DL1 Expression

           ![image](images/gene_expression/KIR3DL1_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				KLF2.md
			
          @@ -56,9 +56,12 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KLF2.svg)

          +## KLF2 Expression

          +![image](images/gene_expression/KLF2_by_pathology.svg)

          +

           ## References

           1. *Pasqualucci L, Trifonov V, Fabbri G, Ma J, Rossi D, Chiarenza A, Wells VA, Grunn A, Messina M, Elliot O, Chan J, Bhagat G, Chadburn A, Gaidano G, Mullighan CG, Rabadan R, Dalla-Favera R. Analysis of the coding genome of diffuse large B-cell lymphoma. Nat Genet. 2011 Jul 31;43(9):830-7. doi: 10.1038/ng.892. PMID: 21804550; PMCID: PMC3297422.*

           2. *Clipson, A., Wang, M., Leval, L., Ashton-Key, M., Wotherspoon, A., Vassiliou, G., Bolli, N., Grove, C., Moody, S., Escudero-Ibarz, L., Gundem, G., Brügger, K., Xue, X., Mi, E., Bench, A., Scott, M., Liu, H., Follows, G., Robles, E., Martinez-Climent, J., Oscier, D., Watkins, A., & Du, M. (2014). KLF2 mutation is the most frequent somatic change in splenic marginal zone lymphoma and identifies a subset with distinct genotype. Leukemia, 29, 1177-1185. https://doi.org/10.1038/leu.2014.330.*

          -3. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*## KLF2 Expression

          -![image](images/gene_expression/KLF2_by_pathology.svg)

          +3. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*

          +

           <!-- ORIGIN: pasqualucciAnalysisCodingGenome2011 -->

				KLHL26.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KLHL26.svg)

           ## KLHL26 Expression

           ![image](images/gene_expression/KLHL26_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				KLHL6.md
			
          @@ -73,8 +73,10 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K

           ![image](images/proteinpaint/KLHL6.svg)

          -## References

          -1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*

          -2. *Choi, J., Zhou, N., & Busino, L. (2019). KLHL6 is a tumor suppressor gene in diffuse large B-cell lymphoma. Cell Cycle, 18, 249 - 256. https://doi.org/10.1080/15384101.2019.1568765.*## KLHL6 Expression

          +## KLHL6 Expression

           ![image](images/gene_expression/KLHL6_by_pathology.svg)

           <!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

          +

          +## References

          +1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*

          +2. *Choi, J., Zhou, N., & Busino, L. (2019). KLHL6 is a tumor suppressor gene in diffuse large B-cell lymphoma. Cell Cycle, 18, 249 - 256. https://doi.org/10.1080/15384101.2019.1568765.*

				LAPTM5.md
			
          @@ -44,3 +44,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/L

           ![image](images/proteinpaint/LAPTM5.svg)

           ## LAPTM5 Expression

           ![image](images/gene_expression/LAPTM5_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				LTB.md
			
          @@ -51,3 +51,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/L

           ![image](images/gene_expression/LTB_by_pathology.svg)

           ## References

          +<!-- ORIGIN: Unknown -->

				LYN.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/L

           ![image](images/gene_expression/LYN_by_pathology.svg)

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				MAGEC1.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MAGEC1.svg)

           ## MAGEC1 Expression

           ![image](images/gene_expression/MAGEC1_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				MALAT1.md
			
          @@ -35,3 +35,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MALAT1.svg)

           ## MALAT1 Expression

           ![image](images/gene_expression/MALAT1_by_pathology.svg)

          +<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->

				MAP2K1.md
			
          @@ -45,3 +45,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MAP2K1.svg)

           ## MAP2K1 Expression

           ![image](images/gene_expression/MAP2K1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				MAP3K6.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MAP3K6.svg)

           ## MAP3K6 Expression

           ![image](images/gene_expression/MAP3K6_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				MAP7D1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MAP7D1.svg)

           ## MAP7D1 Expression

           ![image](images/gene_expression/MAP7D1_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				MEF2C.md
			
          @@ -49,3 +49,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ## References

          +<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->

				MGEA5.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MGEA5.svg)

           ## MGEA5 Expression

           ![image](images/gene_expression/MGEA5_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				MIR155HG.md
			
          @@ -35,3 +35,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MIR155HG.svg)

           ## MIR155HG Expression

           ![image](images/gene_expression/MIR155HG_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				MKI67.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MKI67.svg)

           ## MKI67 Expression

           ![image](images/gene_expression/MKI67_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				MME.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MME.svg)

           ## MME Expression

           ![image](images/gene_expression/MME_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				MRGPRF.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MRGPRF.svg)

           ## MRGPRF Expression

           ![image](images/gene_expression/MRGPRF_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				MS4A1.md
			
          @@ -40,4 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ## MS4A1 Expression

           ![image](images/gene_expression/MS4A1_by_pathology.svg)

           ## References

          -1. *Rushton CK, Arthur SE, Alcaide M, Cheung M, Jiang A, Coyle KM, Cleary KLS, Thomas N, Hilton LK, Michaud N, Daigle S, Davidson J, Bushell K, Yu S, Rys RN, Jain M, Shepherd L, Marra MA, Kuruvilla J, Crump M, Mann K, Assouline S, Connors JM, Steidl C, Cragg MS, Scott DW, Johnson NA, Morin RD. Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma. Blood Adv. 2020 Jul 14;4(13):2886-2898. doi: 10.1182/bloodadvances.2020001696. PMID: 32589730; PMCID: PMC7362366.*

          \ No newline at end of file

          +1. *Rushton CK, Arthur SE, Alcaide M, Cheung M, Jiang A, Coyle KM, Cleary KLS, Thomas N, Hilton LK, Michaud N, Daigle S, Davidson J, Bushell K, Yu S, Rys RN, Jain M, Shepherd L, Marra MA, Kuruvilla J, Crump M, Mann K, Assouline S, Connors JM, Steidl C, Cragg MS, Scott DW, Johnson NA, Morin RD. Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma. Blood Adv. 2020 Jul 14;4(13):2886-2898. doi: 10.1182/bloodadvances.2020001696. PMID: 32589730; PMCID: PMC7362366.*<!-- ORIGIN: rushtonGeneticEvolutionaryPatterns2020 -->

				MYC.md
			
          @@ -86,3 +86,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ## References

          +<!-- ORIGIN: Unknown -->

				MYCBP2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MYCBP2.svg)

           ## MYCBP2 Expression

           ![image](images/gene_expression/MYCBP2_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				MYH10.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MYH10.svg)

           ## MYH10 Expression

           ![image](images/gene_expression/MYH10_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				MYO18A.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MYO18A.svg)

           ## MYO18A Expression

           ![image](images/gene_expression/MYO18A_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				MYO1E.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M

           ![image](images/proteinpaint/MYO1E.svg)

           ## MYO1E Expression

           ![image](images/gene_expression/MYO1E_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				NBEAL1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NBEAL1.svg)

           ## NBEAL1 Expression

           ![image](images/gene_expression/NBEAL1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				NCOA3.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NCOA3.svg)

           ## NCOA3 Expression

           ![image](images/gene_expression/NCOA3_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				NCOR2.md
			
          @@ -51,3 +51,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/gene_expression/NCOR2_by_pathology.svg)

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				NEAT1.md
			
          @@ -35,3 +35,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NEAT1.svg)

           ## NEAT1 Expression

           ![image](images/gene_expression/NEAT1_by_pathology.svg)

          +<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->

				NFKB1.md
			
          @@ -48,3 +48,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/gene_expression/NFKB1_by_pathology.svg)

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				NFKBIA.md
			
          @@ -49,3 +49,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ## References

           1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				NIN.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NIN.svg)

           ## NIN Expression

           ![image](images/gene_expression/NIN_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				NLRC5.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NLRC5.svg)

           ## NLRC5 Expression

           ![image](images/gene_expression/NLRC5_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				NOA1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NOA1.svg)

           ## NOA1 Expression

           ![image](images/gene_expression/NOA1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				NRXN2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NRXN2.svg)

           ## NRXN2 Expression

           ![image](images/gene_expression/NRXN2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				NSD2.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N

           ![image](images/proteinpaint/NSD2.svg)

           ## NSD2 Expression

           ![image](images/gene_expression/NSD2_by_pathology.svg)

          +<!-- ORIGIN: beaLandscapeSomaticMutations2013 -->

				OGDHL.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/O

           ![image](images/proteinpaint/OGDHL.svg)

           ## OGDHL Expression

           ![image](images/gene_expression/OGDHL_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				OR8H2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/O

           ![image](images/proteinpaint/OR8H2.svg)

           ## OR8H2 Expression

           ![image](images/gene_expression/OR8H2_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				P2RY2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/P2RY2.svg)

           ## P2RY2 Expression

           ![image](images/gene_expression/P2RY2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				PABPC4L.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PABPC4L.svg)

           ## PABPC4L Expression

           ![image](images/gene_expression/PABPC4L_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				PC.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PC.svg)

           ## PC Expression

           ![image](images/gene_expression/PC_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				PCBP1.md
			
          @@ -50,3 +50,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PCBP1.svg)

           ## PCBP1 Expression

           ![image](images/gene_expression/PCBP1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				PCDHA11.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PCDHA11.svg)

           ## PCDHA11 Expression

           ![image](images/gene_expression/PCDHA11_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				PCDHB2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PCDHB2.svg)

           ## PCDHB2 Expression

           ![image](images/gene_expression/PCDHB2_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				PDCD11.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PDCD11.svg)

           ## PDCD11 Expression

           ![image](images/gene_expression/PDCD11_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				PDZRN3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PDZRN3.svg)

           ## PDZRN3 Expression

           ![image](images/gene_expression/PDZRN3_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				PIK3CD.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PIK3CD.svg)

           ## PIK3CD Expression

           ![image](images/gene_expression/PIK3CD_by_pathology.svg)

          +<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->

				PLCG2.md
			
          @@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PLCG2.svg)

           ## PLCG2 Expression

           ![image](images/gene_expression/PLCG2_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				PLXNB3.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PLXNB3.svg)

           ## PLXNB3 Expression

           ![image](images/gene_expression/PLXNB3_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				PMAIP1.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PMAIP1.svg)

           ## PMAIP1 Expression

           ![image](images/gene_expression/PMAIP1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				POLRMT.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/POLRMT.svg)

           ## POLRMT Expression

           ![image](images/gene_expression/POLRMT_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				POR.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/POR.svg)

           ## POR Expression

           ![image](images/gene_expression/POR_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				POT1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/POT1.svg)

           ## POT1 Expression

           ![image](images/gene_expression/POT1_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				POU2AF1.md
			
          @@ -54,3 +54,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/POU2AF1.svg)

           ## POU2AF1 Expression

           ![image](images/gene_expression/POU2AF1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				POU2F2.md
			
          @@ -46,3 +46,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/POU2F2.svg)

           ## POU2F2 Expression

           ![image](images/gene_expression/POU2F2_by_pathology.svg)

          +<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->

				PPP1R9B.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           <!-- FLAGGED FOR TIER 2 -->

          +<!-- ORIGIN: Unknown -->

				PPP4C.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PPP4C.svg)

           ## PPP4C Expression

           ![image](images/gene_expression/PPP4C_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				PPP6R2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PPP6R2.svg)

           ## PPP6R2 Expression

           ![image](images/gene_expression/PPP6R2_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				PREX1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PREX1.svg)

           ## PREX1 Expression

           ![image](images/gene_expression/PREX1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				PRKCD.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PRKCD.svg)

           ## PRKCD Expression

           ![image](images/gene_expression/PRKCD_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				PRSS22.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PRSS22.svg)

           ## PRSS22 Expression

           ![image](images/gene_expression/PRSS22_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				PTEN.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PTEN.svg)

           ## PTEN Expression

           ![image](images/gene_expression/PTEN_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				PTMA.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PTMA.svg)

           ## PTMA Expression

           ![image](images/gene_expression/PTMA_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				PTPN1.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PTPN1.svg)

           ## PTPN1 Expression

           ![image](images/gene_expression/PTPN1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				PTPRD.md
			
          @@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PTPRD.svg)

           ## PTPRD Expression

           ![image](images/gene_expression/PTPRD_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				PTPRN.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PTPRN.svg)

           ## PTPRN Expression

           ![image](images/gene_expression/PTPRN_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				PXDNL.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PXDNL.svg)

           ## PXDNL Expression

           ![image](images/gene_expression/PXDNL_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				PZP.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P

           ![image](images/proteinpaint/PZP.svg)

           ## PZP Expression

           ![image](images/gene_expression/PZP_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				RANBP6.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RANBP6.svg)

           ## RANBP6 Expression

           ![image](images/gene_expression/RANBP6_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				RBM6.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RBM6.svg)

           ## RBM6 Expression

           ![image](images/gene_expression/RBM6_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				RBP3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RBP3.svg)

           ## RBP3 Expression

           ![image](images/gene_expression/RBP3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				RET.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RET.svg)

           ## RET Expression

           ![image](images/gene_expression/RET_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				REV3L.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/REV3L.svg)

           ## REV3L Expression

           ![image](images/gene_expression/REV3L_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				RFX7.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RFX7.svg)

           ## RFX7 Expression

           ![image](images/gene_expression/RFX7_by_pathology.svg)

          +<!-- ORIGIN: grandeGenomewideDiscoverySomatic2019 -->

				RFXAP.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RFXAP.svg)

           ## RFXAP Expression

           ![image](images/gene_expression/RFXAP_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				RHEX.md
			
          @@ -26,3 +26,4 @@

           |chr1    |206285239 |206288105|[TSS](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr1%3A206285239%2D206288105)|NA                |

           ## RHEX Expression

           ![image](images/gene_expression/RHEX_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				RHOH.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RHOH.svg)

           ## RHOH Expression

           ![image](images/gene_expression/RHOH_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				RNF144B.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RNF144B.svg)

           ## RNF144B Expression

           ![image](images/gene_expression/RNF144B_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				ROBO2.md
			
          @@ -25,3 +25,4 @@

           > First described in MCL in 2014 by [Zhang J](https://pubmed.ncbi.nlm.nih.gov/24682267)

           ## ROBO2 Expression

           ![image](images/gene_expression/ROBO2_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				RPL10.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RPL10.svg)

           ## RPL10 Expression

           ![image](images/gene_expression/RPL10_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				RPL22.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/R

           ![image](images/proteinpaint/RPL22.svg)

           ## RPL22 Expression

           ![image](images/gene_expression/RPL22_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				RUBCNL.md
			
          @@ -21,3 +21,4 @@

           ## RUBCNL Expression

           ![image](images/gene_expression/RUBCNL_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				S1PR1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/S1PR1.svg)

           ## S1PR1 Expression

           ![image](images/gene_expression/S1PR1_by_pathology.svg)

          +<!-- ORIGIN: pararajalingamCodingNoncodingDrivers2020 -->

				SAL3.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SAL3.svg)

           ## SAL3 Expression

           ![image](images/gene_expression/SAL3_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				SALL3.md
			
          @@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SALL3.svg)

           ## SALL3 Expression

           ![image](images/gene_expression/SALL3_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				SAPS2.md
			
          @@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SAPS2.svg)

           ## SAPS2 Expression

           ![image](images/gene_expression/SAPS2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				SBF1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SBF1.svg)

           ## SBF1 Expression

           ![image](images/gene_expression/SBF1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				SEL1L3.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SEL1L3.svg)

           ## SEL1L3 Expression

           ![image](images/gene_expression/SEL1L3_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				SEPT10.md
			
          @@ -33,3 +33,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SEPT10.svg)

           ## SEPT10 Expression

           ![image](images/gene_expression/SEPT10_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				SEPTIN9.md
			
          @@ -28,3 +28,4 @@

           |chr17   |75453203  |75471471|[intron-3](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr17%3A75453203%2D75471471)|active_promoter   |

           ## SEPTIN9 Expression

           ![image](images/gene_expression/SEPTIN9_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				SESN1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SESN1.svg)

           ## SESN1 Expression

           ![image](images/gene_expression/SESN1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				SETD2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SETD2.svg)

           ## SETD2 Expression

           ![image](images/gene_expression/SETD2_by_pathology.svg)

          +<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->

				SHANK1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SHANK1.svg)

           ## SHANK1 Expression

           ![image](images/gene_expression/SHANK1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				SHROOM3.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SHROOM3.svg)

           ## SHROOM3 Expression

           ![image](images/gene_expression/SHROOM3_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				SI.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SI.svg)

           ## SI Expression

           ![image](images/gene_expression/SI_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				SIN3A.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SIN3A.svg)

           ## SIN3A Expression

           ![image](images/gene_expression/SIN3A_by_pathology.svg)

          +<!-- ORIGIN: grandeGenomewideDiscoverySomatic2019 -->

				SLC29A2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SLC29A2.svg)

           ## SLC29A2 Expression

           ![image](images/gene_expression/SLC29A2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				SMARCB1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SMARCB1.svg)

           ## SMARCB1 Expression

           ![image](images/gene_expression/SMARCB1_by_pathology.svg)

          +<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->

				SMC1A.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SMC1A.svg)

           ## SMC1A Expression

           ![image](images/gene_expression/SMC1A_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				SNTB2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SNTB2.svg)

           ## SNTB2 Expression

           ![image](images/gene_expression/SNTB2_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				SP140.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SP140.svg)

           ## SP140 Expression

           ![image](images/gene_expression/SP140_by_pathology.svg)

          +<!-- ORIGIN: pararajalingamCodingNoncodingDrivers2020 -->

				SP3.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SP3.svg)

           ## SP3 Expression

           ![image](images/gene_expression/SP3_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				ST6GAL1.md
			
          @@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/ST6GAL1.svg)

           ## ST6GAL1 Expression

           ![image](images/gene_expression/ST6GAL1_by_pathology.svg)

          +<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->

				STAB2.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/STAB2.svg)

           ## STAB2 Expression

           ![image](images/gene_expression/STAB2_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				SYNCRIP.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SYNCRIP.svg)

           ## SYNCRIP Expression

           ![image](images/gene_expression/SYNCRIP_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				SYNE1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SYNE1.svg)

           ## SYNE1 Expression

           ![image](images/gene_expression/SYNE1_by_pathology.svg)

          +<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->

				SYNGAP1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S

           ![image](images/proteinpaint/SYNGAP1.svg)

           ## SYNGAP1 Expression

           ![image](images/gene_expression/SYNGAP1_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				TBC1D26.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TBC1D26.svg)

           ## TBC1D26 Expression

           ![image](images/gene_expression/TBC1D26_by_pathology.svg)

          +<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

				TBC1D9B.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TBC1D9B.svg)

           ## TBC1D9B Expression

           ![image](images/gene_expression/TBC1D9B_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				TCF3.md
			
          @@ -49,3 +49,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TCF3.svg)

           ## TCF3 Expression

           ![image](images/gene_expression/TCF3_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				TERT.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TERT.svg)

           ## TERT Expression

           ![image](images/gene_expression/TERT_by_pathology.svg)

          +<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->

				TIGD6.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TIGD6.svg)

           ## TIGD6 Expression

           ![image](images/gene_expression/TIGD6_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				TOP2A.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TOP2A.svg)

           ## TOP2A Expression

           ![image](images/gene_expression/TOP2A_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				TPP1.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TPP1.svg)

           ## TPP1 Expression

           ![image](images/gene_expression/TPP1_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				TPST2.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TPST2.svg)

           ## TPST2 Expression

           ![image](images/gene_expression/TPST2_by_pathology.svg)

          +<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

				TRIP12.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TRIP12.svg)

           ## TRIP12 Expression

           ![image](images/gene_expression/TRIP12_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				TRRAP.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T

           ![image](images/proteinpaint/TRRAP.svg)

           ## TRRAP Expression

           ![image](images/gene_expression/TRRAP_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				UBE2J1.md
			
          @@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/U

           ![image](images/proteinpaint/UBE2J1.svg)

           ## UBE2J1 Expression

           ![image](images/gene_expression/UBE2J1_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				UNC5C.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/U

           ![image](images/proteinpaint/UNC5C.svg)

           ## UNC5C Expression

           ![image](images/gene_expression/UNC5C_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				UNC5D.md
			
          @@ -36,4 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/U

           ## UNC5D Expression

           ![image](images/gene_expression/UNC5D_by_pathology.svg)

          -<!-- FLAGGED FOR TIER 2 -->

          \ No newline at end of file

          +<!-- FLAGGED FOR TIER 2 --><!-- ORIGIN: Unknown -->

				VMA21.md
			
          @@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/V

           ![image](images/proteinpaint/VMA21.svg)

           ## VMA21 Expression

           ![image](images/gene_expression/VMA21_by_pathology.svg)

          +<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

				VPS13B.md
			
          @@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/V

           ![image](images/proteinpaint/VPS13B.svg)

           ## VPS13B Expression

           ![image](images/gene_expression/VPS13B_by_pathology.svg)

          +<!-- ORIGIN: Unknown -->

				VWA7.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/V

           ![image](images/proteinpaint/VWA7.svg)

           ## VWA7 Expression

           ![image](images/gene_expression/VWA7_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				WDR7.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/W

           ![image](images/proteinpaint/WDR7.svg)

           ## WDR7 Expression

           ![image](images/gene_expression/WDR7_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				WDR90.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/W

           ![image](images/proteinpaint/WDR90.svg)

           ## WDR90 Expression

           ![image](images/gene_expression/WDR90_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				WHAMM.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/W

           ![image](images/proteinpaint/WHAMM.svg)

           ## WHAMM Expression

           ![image](images/gene_expression/WHAMM_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

				WNK2.md
			
          @@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/W

           ![image](images/proteinpaint/WNK2.svg)

           ## WNK2 Expression

           ![image](images/gene_expression/WNK2_by_pathology.svg)

          +<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

				XBP1.md
			
          @@ -40,4 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/X

           ## XBP1 Expression

           ![image](images/gene_expression/XBP1_by_pathology.svg)

          -<!-- FLAGGED FOR REMOVAL -->

          \ No newline at end of file

          +<!-- FLAGGED FOR REMOVAL --><!-- ORIGIN: Unknown -->

				XIRP2.md
			
          @@ -40,3 +40,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/X

           ![image](images/proteinpaint/XIRP2.svg)

           ## XIRP2 Expression

           ![image](images/gene_expression/XIRP2_by_pathology.svg)

          +<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

				YY1AP1.md
			
          @@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/Y

           ![image](images/proteinpaint/YY1AP1.svg)

           ## YY1AP1 Expression

           ![image](images/gene_expression/YY1AP1_by_pathology.svg)

          +<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

...	...	@@ -41,3 +41,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
41	41	![image](images/proteinpaint/BACH2.svg)
42	42	## BACH2 Expression
43	43	![image](images/gene_expression/BACH2_by_pathology.svg)
	44	+<!-- ORIGIN: grandeGenomewideDiscoverySomatic2019 -->

...	...	@@ -62,3 +62,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
62	62	1. Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, Liu H, Price HP, Gesk S, Steinemann D, Schlegelberger B, Oscier DG, Siebert R, Tucker PW, Dyer MJ. The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Blood. 2001 Dec 1;98(12):3413-20. doi: 10.1182/blood.v98.12.3413. PMID: 11719382.
63	63	## BCL11A Expression
64	64	![image](images/gene_expression/BCL11A_by_pathology.svg)
	65	+<!-- ORIGIN: Unknown -->

...	...	@@ -74,3 +74,4 @@ and BCL2 rearrangements-an LLMPP study. Blood. 2024. Epub May 3.*
74	74	3. Singh K, Briggs JM. Functional Implications of the spectrum of BCL2 mutations in Lymphoma. Mutat Res Rev Mutat Res. 2016 Jul-Sep;769:1-18. doi: 10.1016/j.mrrev.2016.06.001. Epub 2016 Jun 16. PMID: 27543313.
75	75	## BCL2 Expression
76	76	![image](images/gene_expression/BCL2_by_pathology.svg)
	77	+<!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

...	...	@@ -38,3 +38,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
38	38	![image](images/proteinpaint/BCL2L11.svg)
39	39	## BCL2L11 Expression
40	40	![image](images/gene_expression/BCL2L11_by_pathology.svg)
	41	+<!-- ORIGIN: Unknown -->

...	...	@@ -52,3 +52,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
52	52	2. Nadeu F, Martin-Garcia D, Clot G, Díaz-Navarro A, Duran-Ferrer M, Navarro A, Vilarrasa-Blasi R, Kulis M, Royo R, Gutiérrez-Abril J, Valdés-Mas R, López C, Chapaprieta V, Puiggros M, Castellano G, Costa D, Aymerich M, Jares P, Espinet B, Muntañola A, Ribera-Cortada I, Siebert R, Colomer D, Torrents D, Gine E, López-Guillermo A, Küppers R, Martin-Subero JI, Puente XS, Beà S, Campo E. Genomic and epigenomic insights into the origin, pathogenesis, and clinical behavior of mantle cell lymphoma subtypes. Blood. 2020 Sep 17;136(12):1419-1432. doi: 10.1182/blood.2020005289. PMID: 32584970; PMCID: PMC7498364.
53	53	## BCOR Expression
54	54	![image](images/gene_expression/BCOR_by_pathology.svg)
	55	+<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->

...	...	@@ -58,3 +58,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
58	58	![image](images/proteinpaint/BCR.svg)
59	59	## BCR Expression
60	60	![image](images/gene_expression/BCR_by_pathology.svg)
	61	+<!-- ORIGIN: Unknown -->

...	...	@@ -39,3 +39,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
39	39	![image](images/proteinpaint/BLK.svg)
40	40	## BLK Expression
41	41	![image](images/gene_expression/BLK_by_pathology.svg)
	42	+<!-- ORIGIN: Unknown -->

...	...	@@ -57,3 +57,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
57	57	![image](images/proteinpaint/BMP7.svg)
58	58	## BMP7 Expression
59	59	![image](images/gene_expression/BMP7_by_pathology.svg)
	60	+<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
36	36	![image](images/proteinpaint/BRD4.svg)
37	37	## BRD4 Expression
38	38	![image](images/gene_expression/BRD4_by_pathology.svg)
	39	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
30	30	![image](images/proteinpaint/C6orf27.svg)
31	31	## C6orf27 Expression
32	32	![image](images/gene_expression/C6orf27_by_pathology.svg)
	33	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -42,3 +42,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
42	42	![image](images/proteinpaint/CAD.svg)
43	43	## CAD Expression
44	44	![image](images/gene_expression/CAD_by_pathology.svg)
	45	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -30,3 +30,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
30	30	![image](images/proteinpaint/CARD4.svg)
31	31	## CARD4 Expression
32	32	![image](images/gene_expression/CARD4_by_pathology.svg)
	33	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -28,3 +28,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
28	28	![image](images/proteinpaint/CCDC42BPB.svg)
29	29	## CCDC42BPB Expression
30	30	![image](images/gene_expression/CCDC42BPB_by_pathology.svg)
	31	+<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/CCND1.svg)
35	35	## CCND1 Expression
36	36	![image](images/gene_expression/CCND1_by_pathology.svg)
	37	+<!-- ORIGIN: beaLandscapeSomaticMutations2013 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CCNF.svg)
37	37	## CCNF Expression
38	38	![image](images/gene_expression/CCNF_by_pathology.svg)
	39	+<!-- ORIGIN: abateDistinctViralMutational2015a -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CCT6B.svg)
37	37	## CCT6B Expression
38	38	![image](images/gene_expression/CCT6B_by_pathology.svg)
	39	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -38,9 +38,12 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
38	38
39	39	![image](images/proteinpaint/CD274.svg)
40	40
	41	+
	42	+## CD274 Expression
	43	+![image](images/gene_expression/CD274_by_pathology.svg)
	44	+
41	45	## References
42	46
43	47	1. Huang RSP, Decker B, Murugesan K, Hiemenz M, Mata DA, Li G, Creeden J, Ramkissoon SH, Ross JS. Pan-cancer analysis of CD274 (PD-L1) mutations in 314,631 patient samples and subset correlation with PD-L1 protein expression. J Immunother Cancer. 2021 Jun;9(6):e002558. doi: 10.1136/jitc-2021-002558. PMID: 34130989; PMCID: PMC8207995.
44		-2. Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.## CD274 Expression
45		-![image](images/gene_expression/CD274_by_pathology.svg)
	48	+2. Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.
46	49	<!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->

...	...	@@ -43,3 +43,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
43	43	![image](images/proteinpaint/CD79A.svg)
44	44	## CD79A Expression
45	45	![image](images/gene_expression/CD79A_by_pathology.svg)
	46	+<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

...	...	@@ -50,9 +50,11 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
50	50
51	51	![image](images/proteinpaint/CD83.svg)
52	52
	53	+## CD83 Expression
	54	+![image](images/gene_expression/CD83_by_pathology.svg)
	55	+
53	56	## References
54	57	1. Lechmann M, Zinser E, Golka A, Steinkasserer A. Role of CD83 in the immunomodulation of dendritic cells. Int Arch Allergy Immunol. 2002 Oct;129(2):113-8. doi: 10.1159/000065883. PMID: 12403928.
55	58	2. Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.
56		-3. Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.## CD83 Expression
57		-![image](images/gene_expression/CD83_by_pathology.svg)
	59	+3. Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.
58	60	<!-- ORIGIN: morinMutationalStructuralAnalysis2013 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CDH17.svg)
37	37	## CDH17 Expression
38	38	![image](images/gene_expression/CDH17_by_pathology.svg)
	39	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/CDH8.svg)
35	35	## CDH8 Expression
36	36	![image](images/gene_expression/CDH8_by_pathology.svg)
	37	+<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CDKN2C.svg)
37	37	## CDKN2C Expression
38	38	![image](images/gene_expression/CDKN2C_by_pathology.svg)
	39	+<!-- ORIGIN: Unknown -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CHD4.svg)
37	37	## CHD4 Expression
38	38	![image](images/gene_expression/CHD4_by_pathology.svg)
	39	+<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/CILP.svg)
35	35	## CILP Expression
36	36	![image](images/gene_expression/CILP_by_pathology.svg)
	37	+<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/COL11A1.svg)
35	35	## COL11A1 Expression
36	36	![image](images/gene_expression/COL11A1_by_pathology.svg)
	37	+<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/COL16A1.svg)
35	35	## COL16A1 Expression
36	36	![image](images/gene_expression/COL16A1_by_pathology.svg)
	37	+<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/COL4A2.svg)
37	37	## COL4A2 Expression
38	38	![image](images/gene_expression/COL4A2_by_pathology.svg)
	39	+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->

...	...	@@ -34,3 +34,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
34	34	![image](images/proteinpaint/CPNE8.svg)
35	35	## CPNE8 Expression
36	36	![image](images/gene_expression/CPNE8_by_pathology.svg)
	37	+<!-- ORIGIN: hubschmannMutationalMechanismsShaping2021b -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CPXM2.svg)
37	37	## CPXM2 Expression
38	38	![image](images/gene_expression/CPXM2_by_pathology.svg)
	39	+<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->

...	...	@@ -36,3 +36,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
36	36	![image](images/proteinpaint/CTCF.svg)
37	37	## CTCF Expression
38	38	![image](images/gene_expression/CTCF_by_pathology.svg)
	39	+<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->