papers/morinMutationalStructuralAnalysis2013.md
... ...
@@ -8,7 +8,7 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|11|29|
11
+|DLBCL|9|29|
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```mermaid
13 13
---
14 14
config:
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@@ -22,12 +22,12 @@ config:
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suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, New Tier 1, 11
26
-New Tier 1, DLBCL Tier 1, 11
25
+This study, New Tier 1, 9
26
+New Tier 1, DLBCL Tier 1, 9
27 27
This study, New Tier 2, 29
28 28
New Tier 2, DLBCL Tier 2, 29
29
-All other DLBCL studies, DLBCL Tier 1, 117
30
-All other DLBCL studies, DLBCL Tier 2, 169
29
+All other DLBCL studies, DLBCL Tier 1, 118
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+All other DLBCL studies, DLBCL Tier 2, 186
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```
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## Novel genes reported in this study
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@@ -37,10 +37,8 @@ All other DLBCL studies, DLBCL Tier 2, 169
37 37
|:-|:-:|
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|[CD83](../CD83)|1 |
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|[CDKN2A](../CDKN2A)|1 |
40
-|[DUSP2](../DUSP2)|1 |
41 40
|[GNAI2](../GNAI2)|1 |
42 41
|[HIST1H1D](../HIST1H1D)|1 |
43
-|[HIST1H1E](../HIST1H1E)|1 |
44 42
|[HIST1H2AC](../HIST1H2AC)|1 |
45 43
|[IKZF3](../IKZF3)|1 |
46 44
|[MPEG1](../MPEG1)|1 |
... ...
@@ -48,26 +46,26 @@ All other DLBCL studies, DLBCL Tier 2, 169
48 46
|[TAF1](../TAF1)|1 |
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50 48
### Tier 2
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-|New gene|DLBCL tier|
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-|:-|:-:|
53
-|[ABI3BP](../ABI3BP)|2 |
54
-|[CDH9](../CDH9)|2 |
55
-|[CNTNAP5](../CNTNAP5)|2 |
56
-|[DNAH5](../DNAH5)|2 |
57
-|[DSG4](../DSG4)|2 |
58
-|[FAM38B](../FAM38B)|2 |
59
-|[FAT4](../FAT4)|2 |
60
-|[FNDC1](../FNDC1)|2 |
61
-|[HDAC7](../HDAC7)|2 |
62
-|[HIST1H2AG](../HIST1H2AG)|2 |
63
-|[IER2](../IER2)|2 |
64
-|[IFNGR1](../IFNGR1)|2 |
65
-|[LRRN3](../LRRN3)|2 |
66
-|[MPDZ](../MPDZ)|2 |
67
-|[NLRP5](../NLRP5)|2 |
68
-|[ODZ3](../ODZ3)|2 |
69
-|[P2RX5](../P2RX5)|2 |
70
-|[PASK](../PASK)|2 |
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+|Novel Gene|BL tier|Average variant quality|QC outcome|
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+|:-|:-:|:-:|:-:|
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+|[ABI3BP](../ABI3BP)|2 |★ ★ ★ ☆ ☆|**Pass**|
52
+|[CDH9](../CDH9)|2 |||
53
+|[CNTNAP5](../CNTNAP5)|2 |||
54
+|[DNAH5](../DNAH5)|2 |||
55
+|[DSG4](../DSG4)|2 |||
56
+|[FAM38B](../FAM38B)|2 |||
57
+|[FAT4](../FAT4)|2 |||
58
+|[FNDC1](../FNDC1)|2 |||
59
+|[HDAC7](../HDAC7)|2 |||
60
+|[HIST1H2AG](../HIST1H2AG)|2 |||
61
+|[IER2](../IER2)|2 |||
62
+|[IFNGR1](../IFNGR1)|2 |||
63
+|[LRRN3](../LRRN3)|2 |||
64
+|[MPDZ](../MPDZ)|2 |||
65
+|[NLRP5](../NLRP5)|2 |||
66
+|[ODZ3](../ODZ3)|2 |||
67
+|[P2RX5](../P2RX5)|2 |||
68
+|[PASK](../PASK)|2 |||
71 69
|[PCDHB11](../PCDHB11)|2 |
72 70
|[PDS5B](../PDS5B)|2 |
73 71
|[PKD1](../PKD1)|2 |