c8b8f4c2e175e33af3a2f06d34a6ddbb87a7983f
BL_genes.md
| ... | ... | @@ -14,34 +14,34 @@ link-citations: true |
| 14 | 14 | ### *29 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First BL evidence | Other entities | |
| 17 | -|:-:|:-:|:-|:-| |
|
| 18 | -|[ARID1A](ARID1A)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 19 | -|[BCL7A](BCL7A)|1, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b]| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 18 | +|[ARID1A](ARID1A)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 19 | +|[BCL7A](BCL7A)|1, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 20 | 20 | |[BMP7](BMP7)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 21 | -|[CCND3](CCND3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017]| |
|
| 21 | +|[CCND3](CCND3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 22 | 22 | |[CHD8](CHD8)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]| |
| 23 | 23 | |[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]| |
| 24 | 24 | |[EIF4A1](EIF4A1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 25 | 25 | |[EPPK1](EPPK1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 26 | 26 | |[FBXO11](FBXO11)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@hubschmannMutationalMechanismsShaping2021b; @parryWholeExomeSequencing2013]| |
| 27 | 27 | |[FOXO1](FOXO1)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]| |
| 28 | -|[GNA13](GNA13)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
|
| 28 | +|[GNA13](GNA13)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 29 | 29 | |[GNAI2](GNAI2)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]| |
| 30 | 30 | |[HNRNPU](HNRNPU)|1, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]| |
| 31 | -|[ID3](ID3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 32 | -|[KMT2D](KMT2D)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]| |
|
| 33 | -|[MYC](MYC)|1, aSHM|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 31 | +|[ID3](ID3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 32 | +|[KMT2D](KMT2D)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]| |
|
| 33 | +|[MYC](MYC)|1, aSHM|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 34 | 34 | |[P2RY8](P2RY8)|1|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 35 | 35 | |[PHF6](PHF6)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]| |
| 36 | 36 | |[PTEN](PTEN)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 37 | 37 | |[RFX7](RFX7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 38 | 38 | |[RHOA](RHOA)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|| |
| 39 | 39 | |[SIN3A](SIN3A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c]| |
| 40 | -|[SMARCA4](SMARCA4)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 40 | +|[SMARCA4](SMARCA4)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 41 | 41 | |[TCF3](TCF3)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 42 | 42 | |[TCL1A](TCL1A)|1, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 43 | 43 | |[TFAP4](TFAP4)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 44 | -|[TP53](TP53)|1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @lohrDiscoveryPrioritizationSomatic2012a; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 44 | +|[TP53](TP53)|1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013]| |
|
| 45 | 45 | |[USP7](USP7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 46 | 46 | |[WNK1](WNK1)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]| |
| 47 | 47 | |
| ... | ... | @@ -51,17 +51,17 @@ link-citations: true |
| 51 | 51 | |
| 52 | 52 | ### This includes *70 genes failed QC (2-F) |
| 53 | 53 | |Gene|Tier| First BL evidence | Other entities | |
| 54 | -|:-:|:-:|:-|:-| |
|
| 54 | +|:-:|:-:|:--|:-| |
|
| 55 | 55 | |[ADAMTS5](ADAMTS5)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 56 | 56 | |[ADNP](ADNP)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 57 | 57 | |[AGO4](AGO4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 58 | 58 | |[ARHGEF1](ARHGEF1)|2|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|| |
| 59 | 59 | |[BACH2](BACH2)|2, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 60 | -|[BCL2](BCL2)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@tanakaFrequentIncidenceSomatic1992; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 60 | +|[BCL2](BCL2)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992]| |
|
| 61 | 61 | |[BCL6](BCL6)|2, aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
| 62 | -|[BTG1](BTG1)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 62 | +|[BTG1](BTG1)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 63 | 63 | |[C16orf48](C16orf48)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 64 | -|[CARD11](CARD11)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]| |
|
| 64 | +|[CARD11](CARD11)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@wuGeneticHeterogeneityPrimary2016; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a; @morinFrequentMutationHistonemodifying2011]| |
|
| 65 | 65 | |[CARD4](CARD4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 66 | 66 | |[CCNF](CCNF)|2|[Abate et al](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]|| |
| 67 | 67 | |[CD79A](CD79A)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]| |
| ... | ... | @@ -72,7 +72,7 @@ link-citations: true |
| 72 | 72 | |[CHD4](CHD4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 73 | 73 | |[CPXM2](CPXM2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 74 | 74 | |[CREBBP](CREBBP)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
| 75 | -|[CXCR4](CXCR4)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]| |
|
| 75 | +|[CXCR4](CXCR4)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]| |
|
| 76 | 76 | |[DHCR7](DHCR7)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 77 | 77 | |[E2F2](E2F2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 78 | 78 | |[EBF1](EBF1)|2, aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]| |
| ... | ... | @@ -87,19 +87,19 @@ link-citations: true |
| 87 | 87 | |[GGTLA4](GGTLA4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 88 | 88 | |[GRB2](GRB2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@pasqualucciAnalysisCodingGenome2011]| |
| 89 | 89 | |[GTSE1](GTSE1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 90 | -|[HIST1H1E](HIST1H1E)|2, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 90 | +|[HIST1H1E](HIST1H1E)|2, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]| |
|
| 91 | 91 | |[HIST1H3D](HIST1H3D)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 92 | 92 | |[HIST1H3I](HIST1H3I)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
| 93 | 93 | |[HIST1H4J](HIST1H4J)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 94 | 94 | |[HLA-DQB1](HLA-DQB1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 95 | -|[IGLL5](IGLL5)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 95 | +|[IGLL5](IGLL5)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @deschGenotypingCirculatingTumor2020]| |
|
| 96 | 96 | |[IKZF3](IKZF3)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]| |
| 97 | 97 | |[IRF8](IRF8)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]| |
| 98 | 98 | |[KANK2](KANK2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 99 | 99 | |[KLHL26](KLHL26)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 100 | -|[KLHL6](KLHL6)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@ganapathiGeneticLandscapeDural2016; @morinFrequentMutationHistonemodifying2011]| |
|
| 101 | -|[KMT2C](KMT2C)|2|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGenomicLandscapeMantle2014; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]| |
|
| 102 | -|[LTB](LTB)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 100 | +|[KLHL6](KLHL6)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @ganapathiGeneticLandscapeDural2016]| |
|
| 101 | +|[KMT2C](KMT2C)|2|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a]| |
|
| 102 | +|[LTB](LTB)|2, aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]| |
|
| 103 | 103 | |[MCL1](MCL1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017; @dunsCharacterizationDLBCLPMBL2021b]| |
| 104 | 104 | |[MIR142](MIR142)|2, aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]| |
| 105 | 105 | |[MKI67](MKI67)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]| |
| ... | ... | @@ -107,11 +107,11 @@ link-citations: true |
| 107 | 107 | |[NBEAL1](NBEAL1)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 108 | 108 | |[NCOR2](NCOR2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]| |
| 109 | 109 | |[NOA1](NOA1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 110 | -|[NOTCH2](NOTCH2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@troenNOTCH2MutationsMarginal2008; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
|
| 110 | +|[NOTCH2](NOTCH2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @troenNOTCH2MutationsMarginal2008; @beaLandscapeSomaticMutations2013]| |
|
| 111 | 111 | |[P2RY2](P2RY2)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 112 | 112 | |[PCBP1](PCBP1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 113 | 113 | |[PDCD11](PDCD11)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 114 | -|[PIM1](PIM1)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 114 | +|[PIM1](PIM1)|2, aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 115 | 115 | |[PLCG2](PLCG2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 116 | 116 | |[PPP6R2](PPP6R2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 117 | 117 | |[PREX1](PREX1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| ... | ... | @@ -152,7 +152,7 @@ link-citations: true |
| 152 | 152 | |[CYP4F22](CYP4F22)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 153 | 153 | |[DLGAP1](DLGAP1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 154 | 154 | |[DNMT1](DNMT1)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 155 | -|[DTX1](DTX1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 155 | +|[DTX1](DTX1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023]| |
|
| 156 | 156 | |[EIF2C4](EIF2C4)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 157 | 157 | |[EML2](EML2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 158 | 158 | |[ENTPD3](ENTPD3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| ... | ... | @@ -164,7 +164,7 @@ link-citations: true |
| 164 | 164 | |[FZD3](FZD3)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 165 | 165 | |[GRIK5](GRIK5)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 166 | 166 | |[HIST1H1C](HIST1H1C)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
| 167 | -|[HIST1H2AG](HIST1H2AG)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 167 | +|[HIST1H2AG](HIST1H2AG)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c]| |
|
| 168 | 168 | |[HIST1H2AM](HIST1H2AM)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
| 169 | 169 | |[HIST1H2BK](HIST1H2BK)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]| |
| 170 | 170 | |[HIST1H3H](HIST1H3H)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
DLBCL_genes.md
| ... | ... | @@ -14,33 +14,33 @@ link-citations: true |
| 14 | 14 | ### *127 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First DLBCL evidence | Other entities | |
| 17 | -|:-:|:-:|:-|:-| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 18 | 18 | |[ACTB](ACTB)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]| |
| 19 | 19 | |[ACTG1](ACTG1)|1, aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]| |
| 20 | -|[ARID1A](ARID1A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]| |
|
| 21 | -|[ATM](ATM)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]| |
|
| 22 | -|[B2M](B2M)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]| |
|
| 23 | -|[BCL10](BCL10)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 24 | -|[BCL2](BCL2)|1, aSHM|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 20 | +|[ARID1A](ARID1A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 21 | +|[ATM](ATM)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]| |
|
| 22 | +|[B2M](B2M)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 23 | +|[BCL10](BCL10)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]| |
|
| 24 | +|[BCL2](BCL2)|1, aSHM|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 25 | 25 | |[BCL6](BCL6)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 26 | -|[BCL7A](BCL7A)|1, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]| |
|
| 26 | +|[BCL7A](BCL7A)|1, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 27 | 27 | |[BIRC6](BIRC6)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]| |
| 28 | 28 | |[BRAF](BRAF)|1|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011a)[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]| |
| 29 | -|[BTG1](BTG1)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 29 | +|[BTG1](BTG1)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 30 | 30 | |[BTG2](BTG2)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 31 | 31 | |[BTK](BTK)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]| |
| 32 | -|[CARD11](CARD11)|1|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@yanBCRTLRSignaling2012a; @paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]| |
|
| 32 | +|[CARD11](CARD11)|1|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@morinFrequentMutationHistonemodifying2011; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019]| |
|
| 33 | 33 | |[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017]| |
| 34 | 34 | |[CD58](CD58)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]| |
| 35 | 35 | |[CD70](CD70)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 36 | 36 | |[CD79B](CD79B)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 37 | 37 | |[CD83](CD83)|1, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]| |
| 38 | 38 | |[CDKN2A](CDKN2A)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019]| |
| 39 | -|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012]| |
|
| 40 | -|[CXCR4](CXCR4)|1, aSHM|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 39 | +|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 40 | +|[CXCR4](CXCR4)|1, aSHM|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 41 | 41 | |[CXCR5](CXCR5)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 42 | 42 | |[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]| |
| 43 | -|[DTX1](DTX1)|1, aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012]| |
|
| 43 | +|[DTX1](DTX1)|1, aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 44 | 44 | |[DUSP2](DUSP2)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 45 | 45 | |[EBF1](EBF1)|1, aSHM|[Bohle et al](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a]| |
| 46 | 46 | |[EEF1A1](EEF1A1)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| ... | ... | @@ -49,21 +49,21 @@ link-citations: true |
| 49 | 49 | |[ETV6](ETV6)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 50 | 50 | |[EZH2](EZH2)|1|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]| |
| 51 | 51 | |[FAS](FAS)|1|[Scholl et al](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]| |
| 52 | -|[FBXO11](FBXO11)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]| |
|
| 52 | +|[FBXO11](FBXO11)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]| |
|
| 53 | 53 | |[FBXW7](FBXW7)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 54 | -|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 55 | -|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]| |
|
| 54 | +|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 55 | +|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]| |
|
| 56 | 56 | |[GNAI2](GNAI2)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]| |
| 57 | 57 | |[GRB2](GRB2)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@paneaWholeGenomeLandscape2019]| |
| 58 | 58 | |[GRHPR](GRHPR)|1, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 59 | 59 | |[HIST1H1B](HIST1H1B)|1, aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]| |
| 60 | 60 | |[HIST1H1C](HIST1H1C)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 61 | -|[HIST1H1D](HIST1H1D)|1, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]| |
|
| 62 | -|[HIST1H1E](HIST1H1E)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]| |
|
| 61 | +|[HIST1H1D](HIST1H1D)|1, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]| |
|
| 62 | +|[HIST1H1E](HIST1H1E)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]| |
|
| 63 | 63 | |[HIST1H2AC](HIST1H2AC)|1, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 64 | -|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 64 | +|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 65 | 65 | |[HIST1H2BC](HIST1H2BC)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@mottokIntegrativeGenomicAnalysis2019b; @krysiakRecurrentSomaticMutations2017b]| |
| 66 | -|[HIST1H2BK](HIST1H2BK)|1, aSHM||[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 66 | +|[HIST1H2BK](HIST1H2BK)|1, aSHM||[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 67 | 67 | |[HIST1H3B](HIST1H3B)|1, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| 68 | 68 | |[HIST2H2BE](HIST2H2BE)|1, aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 69 | 69 | |[HLA-A](HLA-A)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@deschGenotypingCirculatingTumor2020]| |
| ... | ... | @@ -75,13 +75,13 @@ link-citations: true |
| 75 | 75 | |[IKZF3](IKZF3)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]| |
| 76 | 76 | |[IL4R](IL4R)|1, aSHM|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]| |
| 77 | 77 | |[IRF4](IRF4)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 78 | -|[IRF8](IRF8)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
|
| 78 | +|[IRF8](IRF8)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 79 | 79 | |[ITPKB](ITPKB)|1, aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 80 | -|[KLF2](KLF2)|1, aSHM|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 80 | +|[KLF2](KLF2)|1, aSHM|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 81 | 81 | |[KLHL14](KLHL14)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 82 | 82 | |[KLHL6](KLHL6)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]| |
| 83 | -|[KMT2C](KMT2C)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhouSporadicEndemicBurkitt2019; @zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a]| |
|
| 84 | -|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]| |
|
| 83 | +|[KMT2C](KMT2C)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a; @zhouSporadicEndemicBurkitt2019]| |
|
| 84 | +|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019]| |
|
| 85 | 85 | |[KRAS](KRAS)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 86 | 86 | |[LCOR](LCOR)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 87 | 87 | |[LTB](LTB)|1, aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]| |
| ... | ... | @@ -91,17 +91,17 @@ link-citations: true |
| 91 | 91 | |[MPEG1](MPEG1)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 92 | 92 | |[MS4A1](MS4A1)|1, aSHM|[Rushton et al](papers/rushtonGeneticEvolutionaryPatterns2020)[@rushtonGeneticEvolutionaryPatterns2020]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 93 | 93 | |[MTOR](MTOR)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]| |
| 94 | -|[MYC](MYC)|1, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017]| |
|
| 94 | +|[MYC](MYC)|1, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]| |
|
| 95 | 95 | |[MYD88](MYD88)|1|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011a)[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]| |
| 96 | -|[NFKBIA](NFKBIA)|1|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@wienandGenomicAnalysesFlowsorted2019b; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 96 | +|[NFKBIA](NFKBIA)|1|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 97 | 97 | |[NFKBIE](NFKBIE)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]| |
| 98 | 98 | |[NFKBIZ](NFKBIZ)|1, noncoding|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|| |
| 99 | 99 | |[NOL9](NOL9)|1, aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]| |
| 100 | -|[NOTCH1](NOTCH1)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]| |
|
| 101 | -|[NOTCH2](NOTCH2)|1|[Troen et al](papers/troenNOTCH2MutationsMarginal2008)[@troenNOTCH2MutationsMarginal2008]|[@beaLandscapeSomaticMutations2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 100 | +|[NOTCH1](NOTCH1)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]| |
|
| 101 | +|[NOTCH2](NOTCH2)|1|[Troen et al](papers/troenNOTCH2MutationsMarginal2008)[@troenNOTCH2MutationsMarginal2008]|[@paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]| |
|
| 102 | 102 | |[OSBPL10](OSBPL10)|1, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 103 | 103 | |[P2RY8](P2RY8)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]| |
| 104 | -|[PIM1](PIM1)|1, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 104 | +|[PIM1](PIM1)|1, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 105 | 105 | |[PIM2](PIM2)|1, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]| |
| 106 | 106 | |[POU2AF1](POU2AF1)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b]| |
| 107 | 107 | |[POU2F2](POU2F2)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b]| |
| ... | ... | @@ -128,9 +128,9 @@ link-citations: true |
| 128 | 128 | |[TMEM30A](TMEM30A)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
| 129 | 129 | |[TMSB4X](TMSB4X)|1, aSHM|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
| 130 | 130 | |[TNFAIP3](TNFAIP3)|1|[Compagno et al](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]| |
| 131 | -|[TNFRSF14](TNFRSF14)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @cheungAcquiredTNFRSF14Mutations2010a]| |
|
| 131 | +|[TNFRSF14](TNFRSF14)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]| |
|
| 132 | 132 | |[TOX](TOX)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 133 | -|[TP53](TP53)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 133 | +|[TP53](TP53)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]| |
|
| 134 | 134 | |[TRRAP](TRRAP)|1|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@rossiCodingGenomeSplenic2012c]| |
| 135 | 135 | |[UBE2A](UBE2A)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| 136 | 136 | |[UNC5C](UNC5C)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| ... | ... | @@ -139,7 +139,7 @@ link-citations: true |
| 139 | 139 | |[WEE1](WEE1)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 140 | 140 | |[XPO1](XPO1)|1|[Mareschal et al](papers/mareschalWholeExomeSequencing2016)[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]| |
| 141 | 141 | |[ZC3H12A](ZC3H12A)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 142 | -|[ZFP36L1](ZFP36L1)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019]| |
|
| 142 | +|[ZFP36L1](ZFP36L1)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]| |
|
| 143 | 143 | |[ZNF292](ZNF292)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 144 | 144 | |[ZNF608](ZNF608)|1, aSHM|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 145 | 145 | |
| ... | ... | @@ -157,9 +157,9 @@ link-citations: true |
| 157 | 157 | |[ARID5B](ARID5B)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]| |
| 158 | 158 | |[ATR](ATR)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 159 | 159 | |[BCL11A](BCL11A)|2, aSHM||| |
| 160 | -|[BCOR](BCOR)|2||[@jalladesExomeSequencingIdentifies2017; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 160 | +|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]| |
|
| 161 | 161 | |[BCR](BCR)|2, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 162 | -|[BIRC3](BIRC3)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b; @beaLandscapeSomaticMutations2013]| |
|
| 162 | +|[BIRC3](BIRC3)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013]| |
|
| 163 | 163 | |[BLK](BLK)|2, aSHM||| |
| 164 | 164 | |[BRINP3](BRINP3)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 165 | 165 | |[BTBD3](BTBD3)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| ... | ... | @@ -189,7 +189,7 @@ link-citations: true |
| 189 | 189 | |[FAM102A](FAM102A)|2, aSHM||| |
| 190 | 190 | |[FAM38B](FAM38B)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 191 | 191 | |[FANK1](FANK1)|2, aSHM||| |
| 192 | -|[FAT4](FAT4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]| |
|
| 192 | +|[FAT4](FAT4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014; @parryWholeExomeSequencing2013]| |
|
| 193 | 193 | |[FCRL3](FCRL3)|2, aSHM||| |
| 194 | 194 | |[FNBP1](FNBP1)|2, aSHM||| |
| 195 | 195 | |[FNDC1](FNDC1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| ... | ... | @@ -205,17 +205,17 @@ link-citations: true |
| 205 | 205 | |[GSG2](GSG2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 206 | 206 | |[H1FOO](H1FOO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 207 | 207 | |[HDAC7](HDAC7)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 208 | -|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 208 | +|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 209 | 209 | |[HIST1H2AL](HIST1H2AL)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 210 | 210 | |[HIST1H2BO](HIST1H2BO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 211 | 211 | |[HLA-DMA](HLA-DMA)|2||| |
| 212 | 212 | |[HLA-DQA1](HLA-DQA1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 213 | 213 | |[HNF1B](HNF1B)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 214 | 214 | |[HNRNPH1](HNRNPH1)|2, noncoding|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 215 | -|[ID3](ID3)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]| |
|
| 215 | +|[ID3](ID3)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]| |
|
| 216 | 216 | |[IER2](IER2)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 217 | 217 | |[IFNGR1](IFNGR1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 218 | -|[IGLL5](IGLL5)|2, aSHM||[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]| |
|
| 218 | +|[IGLL5](IGLL5)|2, aSHM||[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 219 | 219 | |[IKBKB](IKBKB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiAlterationBIRC3Multiple2011a]| |
| 220 | 220 | |[IKBKE](IKBKE)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 221 | 221 | |[IL16](IL16)|2||| |
| ... | ... | @@ -251,7 +251,7 @@ link-citations: true |
| 251 | 251 | |[NANOG](NANOG)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 252 | 252 | |[NAV1](NAV1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 253 | 253 | |[NCOA3](NCOA3)|2, aSHM||| |
| 254 | -|[NCOR2](NCOR2)|2||[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 254 | +|[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 255 | 255 | |[NEAT1](NEAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 256 | 256 | |[NF1](NF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 257 | 257 | |[NFKB1](NFKB1)|2||| |
FL_genes.md
| ... | ... | @@ -14,130 +14,130 @@ link-citations: true |
| 14 | 14 | ### *66 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First FL evidence | Other entities | |
| 17 | -|:-:|:-:|:-|:-| |
|
| 18 | -|[ACTB](ACTB)|1, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 19 | -|[ARID1A](ARID1A)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019b; @rossiCodingGenomeSplenic2012c]| |
|
| 20 | -|[ATP6AP1](ATP6AP1)|1|[Study Overview](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
|
| 21 | -|[ATP6V1B2](ATP6V1B2)|1|[Study Overview](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
|
| 22 | -|[B2M](B2M)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 23 | -|[BCL2](BCL2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992]| |
|
| 24 | -|[BCL6](BCL6)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]| |
|
| 25 | -|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 26 | -|[BIRC6](BIRC6)|1||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]| |
|
| 27 | -|[BTG1](BTG1)|1, aSHM||[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | -|[BTG2](BTG2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
|
| 29 | -|[BTK](BTK)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
|
| 30 | -|[CARD11](CARD11)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016]| |
|
| 31 | -|[CCND3](CCND3)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]| |
|
| 32 | -|[CD83](CD83)|1, aSHM|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 33 | -|[CREBBP](CREBBP)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 34 | -|[CTSS](CTSS)|1|[Study Overview](papers/barariaCathepsinAlterationsInduce2020c)[@barariaCathepsinAlterationsInduce2020c]|| |
|
| 35 | -|[DTX1](DTX1)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @gomezUltraDeepSequencingReveals2023]| |
|
| 36 | -|[EBF1](EBF1)|1, aSHM||[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]| |
|
| 37 | -|[EEF1A1](EEF1A1)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
|
| 38 | -|[EP300](EP300)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 39 | -|[EZH2](EZH2)|1|[Study Overview](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 18 | +|[ACTB](ACTB)|1, aSHM||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]| |
|
| 20 | +|[ATP6AP1](ATP6AP1)|1|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
|
| 21 | +|[ATP6V1B2](ATP6V1B2)|1|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
|
| 22 | +|[B2M](B2M)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 23 | +|[BCL2](BCL2)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 24 | +|[BCL6](BCL6)|1, aSHM||[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]| |
|
| 25 | +|[BCL7A](BCL7A)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @arthurGenomewideDiscoverySomatic2018]| |
|
| 26 | +|[BIRC6](BIRC6)|1||[@sarkozyMutationalLandscapeGray2021a; @reddyGeneticFunctionalDrivers2017]| |
|
| 27 | +|[BTG1](BTG1)|1, aSHM||[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 28 | +|[BTG2](BTG2)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
|
| 29 | +|[BTK](BTK)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
|
| 30 | +|[CARD11](CARD11)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019]| |
|
| 31 | +|[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 32 | +|[CD83](CD83)|1, aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]| |
|
| 33 | +|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]| |
|
| 34 | +|[CTSS](CTSS)|1|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020c)[@barariaCathepsinAlterationsInduce2020c]|| |
|
| 35 | +|[DTX1](DTX1)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012]| |
|
| 36 | +|[EBF1](EBF1)|1, aSHM||[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]| |
|
| 37 | +|[EEF1A1](EEF1A1)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
|
| 38 | +|[EP300](EP300)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 39 | +|[EZH2](EZH2)|1|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]| |
|
| 40 | 40 | |[FAS](FAS)|1||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]| |
| 41 | -|[FOXO1](FOXO1)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 42 | -|[GNA13](GNA13)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]| |
|
| 43 | -|[GNAI2](GNAI2)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 44 | -|[HIST1H1B](HIST1H1B)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 45 | -|[HIST1H1C](HIST1H1C)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
|
| 46 | -|[HIST1H1D](HIST1H1D)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]| |
|
| 47 | -|[HIST1H1E](HIST1H1E)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 48 | -|[HIST1H2AC](HIST1H2AC)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 49 | -|[HIST1H2AG](HIST1H2AG)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c]| |
|
| 50 | -|[HIST1H2AM](HIST1H2AM)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 51 | -|[HIST1H2BC](HIST1H2BC)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 52 | -|[HIST1H2BD](HIST1H2BD)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 53 | -|[HIST1H2BG](HIST1H2BG)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 54 | -|[HIST1H3B](HIST1H3B)|1, aSHM||[@reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 55 | -|[HIST1H3G](HIST1H3G)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 56 | -|[HVCN1](HVCN1)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 57 | -|[IRF4](IRF4)|1, aSHM||[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]| |
|
| 58 | -|[IRF8](IRF8)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
|
| 59 | -|[ITPKB](ITPKB)|1, aSHM||[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 41 | +|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 42 | +|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]| |
|
| 43 | +|[GNAI2](GNAI2)|1||[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]| |
|
| 44 | +|[HIST1H1B](HIST1H1B)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 45 | +|[HIST1H1C](HIST1H1C)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
|
| 46 | +|[HIST1H1D](HIST1H1D)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]| |
|
| 47 | +|[HIST1H1E](HIST1H1E)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 48 | +|[HIST1H2AC](HIST1H2AC)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 49 | +|[HIST1H2AG](HIST1H2AG)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013]| |
|
| 50 | +|[HIST1H2AM](HIST1H2AM)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 51 | +|[HIST1H2BC](HIST1H2BC)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 52 | +|[HIST1H2BD](HIST1H2BD)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 53 | +|[HIST1H2BG](HIST1H2BG)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 54 | +|[HIST1H3B](HIST1H3B)|1, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]| |
|
| 55 | +|[HIST1H3G](HIST1H3G)|1, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 56 | +|[HVCN1](HVCN1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 57 | +|[IRF4](IRF4)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 58 | +|[IRF8](IRF8)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
|
| 59 | +|[ITPKB](ITPKB)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @reichelFlowSortingExome2015a]| |
|
| 60 | 60 | |[KLF2](KLF2)|1, aSHM||[@pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
| 61 | -|[KLHL6](KLHL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]| |
|
| 62 | -|[KMT2D](KMT2D)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013]| |
|
| 63 | -|[LTB](LTB)|1, aSHM||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 64 | -|[MAP2K1](MAP2K1)|1|[Study Overview](papers/louissaintPediatrictypeNodalFollicular2016a)[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]| |
|
| 65 | -|[MEF2B](MEF2B)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]| |
|
| 61 | +|[KLHL6](KLHL6)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]| |
|
| 62 | +|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013]| |
|
| 63 | +|[LTB](LTB)|1, aSHM||[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]| |
|
| 64 | +|[MAP2K1](MAP2K1)|1|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016a)[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]| |
|
| 65 | +|[MEF2B](MEF2B)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]| |
|
| 66 | 66 | |[MEF2C](MEF2C)|1, aSHM||[@arthurGenomewideDiscoverySomatic2018]| |
| 67 | 67 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 68 | -|[PIM1](PIM1)|1, aSHM||[@burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 69 | -|[POU2AF1](POU2AF1)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 70 | -|[POU2F2](POU2F2)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 68 | +|[PIM1](PIM1)|1, aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 69 | +|[POU2AF1](POU2AF1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 70 | +|[POU2F2](POU2F2)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 71 | 71 | |[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 72 | 72 | |[RRAGC](RRAGC)|1||[@okosunRecurrentMTORC1activatingRRAGC2016a]| |
| 73 | 73 | |[S1PR2](S1PR2)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]| |
| 74 | -|[SGK1](SGK1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 75 | -|[SMARCA4](SMARCA4)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 74 | +|[SGK1](SGK1)|1, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 75 | +|[SMARCA4](SMARCA4)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@nadeuGenomicEpigenomicInsights2020b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a]| |
|
| 76 | 76 | |[SOCS1](SOCS1)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]| |
| 77 | -|[STAT6](STAT6)|1|[Study Overview](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]| |
|
| 77 | +|[STAT6](STAT6)|1|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]| |
|
| 78 | 78 | |[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
| 79 | 79 | |[TMSB4X](TMSB4X)|1, aSHM||[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 80 | -|[TNFAIP3](TNFAIP3)|1||[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]| |
|
| 81 | -|[TNFRSF14](TNFRSF14)|1|[Study Overview](papers/cheungAcquiredTNFRSF14Mutations2010a)[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b; @morinFrequentMutationHistonemodifying2011]| |
|
| 82 | -|[TP53](TP53)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 83 | -|[VMA21](VMA21)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 80 | +|[TNFAIP3](TNFAIP3)|1||[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 81 | +|[TNFRSF14](TNFRSF14)|1|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)[@cheungAcquiredTNFRSF14Mutations2010a]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]| |
|
| 82 | +|[TP53](TP53)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]| |
|
| 83 | +|[VMA21](VMA21)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 84 | 84 | |
| 85 | 85 | ## Tier 2 FL genes |
| 86 | 86 | |
| 87 | 87 | ### *50 total* |
| 88 | 88 | |
| 89 | 89 | |Gene|Tier| First FL evidence | Other entities | |
| 90 | -|:-:|:-:|:-|:-| |
|
| 91 | -|[ABL2](ABL2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 92 | -|[ACTG1](ACTG1)|2, aSHM|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]| |
|
| 93 | -|[ATP6V1A](ATP6V1A)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 94 | -|[BCL10](BCL10)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]| |
|
| 95 | -|[CD70](CD70)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 90 | +|:-:|:-:|:--|:-| |
|
| 91 | +|[ABL2](ABL2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 92 | +|[ACTG1](ACTG1)|2, aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]| |
|
| 93 | +|[ATP6V1A](ATP6V1A)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 94 | +|[BCL10](BCL10)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]| |
|
| 95 | +|[CD70](CD70)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 96 | 96 | |[CD79B](CD79B)|2||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
| 97 | -|[CDC42BPB](CDC42BPB)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 98 | -|[CILP](CILP)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 99 | -|[CPNE8](CPNE8)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 100 | -|[CXCR4](CXCR4)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]| |
|
| 101 | -|[CYP2A6](CYP2A6)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 102 | -|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 103 | -|[DHX15](DHX15)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 97 | +|[CDC42BPB](CDC42BPB)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 98 | +|[CILP](CILP)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 99 | +|[CPNE8](CPNE8)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 100 | +|[CXCR4](CXCR4)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]| |
|
| 101 | +|[CYP2A6](CYP2A6)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 102 | +|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 103 | +|[DHX15](DHX15)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 104 | 104 | |[DUSP2](DUSP2)|2, aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]| |
| 105 | -|[EGR1](EGR1)|2|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@rossiCodingGenomeSplenic2012c; @reichelFlowSortingExome2015a]| |
|
| 106 | -|[FZR1](FZR1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 107 | -|[GBP7](GBP7)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 108 | -|[GRM6](GRM6)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 109 | -|[HIST1H2BM](HIST1H2BM)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 110 | -|[HIST1H3I](HIST1H3I)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 111 | -|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 105 | +|[EGR1](EGR1)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]| |
|
| 106 | +|[FZR1](FZR1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 107 | +|[GBP7](GBP7)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 108 | +|[GRM6](GRM6)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 109 | +|[HIST1H2BM](HIST1H2BM)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 110 | +|[HIST1H3I](HIST1H3I)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 111 | +|[HLA-B](HLA-B)|2||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 112 | 112 | |[HNRNPD](HNRNPD)|2||| |
| 113 | -|[IGLL5](IGLL5)|2, aSHM|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]| |
|
| 114 | -|[JUP](JUP)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 115 | -|[KIR3DL1](KIR3DL1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 116 | -|[LAPTM5](LAPTM5)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 117 | -|[MAGEC1](MAGEC1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 118 | -|[MAP7D1](MAP7D1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 119 | -|[MGEA5](MGEA5)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 120 | -|[MKI67](MKI67)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]| |
|
| 121 | -|[MYC](MYC)|2, aSHM||[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]| |
|
| 122 | -|[MYCBP2](MYCBP2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 113 | +|[IGLL5](IGLL5)|2, aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]| |
|
| 114 | +|[JUP](JUP)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 115 | +|[KIR3DL1](KIR3DL1)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 116 | +|[LAPTM5](LAPTM5)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 117 | +|[MAGEC1](MAGEC1)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 118 | +|[MAP7D1](MAP7D1)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 119 | +|[MGEA5](MGEA5)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 120 | +|[MKI67](MKI67)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]| |
|
| 121 | +|[MYC](MYC)|2, aSHM||[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 122 | +|[MYCBP2](MYCBP2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 123 | 123 | |[MYD88](MYD88)|2||[@yanBCRTLRSignaling2012a; @ngoOncogenicallyActiveMYD882011a]| |
| 124 | -|[NFKBIA](NFKBIA)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@lakeMutationsNFKBIAEncoding2009; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 125 | -|[OR8H2](OR8H2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 126 | -|[P2RY8](P2RY8)|2||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]| |
|
| 127 | -|[PDS5B](PDS5B)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 128 | -|[PPP4C](PPP4C)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 129 | -|[PRKDC](PRKDC)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 130 | -|[PZP](PZP)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 131 | -|[RBM6](RBM6)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 132 | -|[SESN1](SESN1)|2|[Study Overview](papers/oricchioGeneticEpigeneticInactivation2017b)[@oricchioGeneticEpigeneticInactivation2017b]|| |
|
| 133 | -|[SHROOM3](SHROOM3)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 134 | -|[SRRM2](SRRM2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 135 | -|[STAB2](STAB2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 136 | -|[TMEM30A](TMEM30A)|2|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
|
| 137 | -|[TPP1](TPP1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 138 | -|[XIRP2](XIRP2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 124 | +|[NFKBIA](NFKBIA)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@lakeMutationsNFKBIAEncoding2009; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 125 | +|[OR8H2](OR8H2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 126 | +|[P2RY8](P2RY8)|2||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 127 | +|[PDS5B](PDS5B)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 128 | +|[PPP4C](PPP4C)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 129 | +|[PRKDC](PRKDC)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 130 | +|[PZP](PZP)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 131 | +|[RBM6](RBM6)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 132 | +|[SESN1](SESN1)|2|[Oricchio et al](papers/oricchioGeneticEpigeneticInactivation2017b)[@oricchioGeneticEpigeneticInactivation2017b]|| |
|
| 133 | +|[SHROOM3](SHROOM3)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 134 | +|[SRRM2](SRRM2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 135 | +|[STAB2](STAB2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 136 | +|[TMEM30A](TMEM30A)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
|
| 137 | +|[TPP1](TPP1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 138 | +|[XIRP2](XIRP2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 139 | 139 | |[ZC3H12A](ZC3H12A)|2||[@arthurGenomewideDiscoverySomatic2018]| |
| 140 | -|[ZNF608](ZNF608)|2|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 140 | +|[ZNF608](ZNF608)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 141 | 141 | |
| 142 | 142 | |
| 143 | 143 | # References |
MCL_genes.md
| ... | ... | @@ -14,83 +14,83 @@ link-citations: true |
| 14 | 14 | ### *23 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First MCL evidence | Other entities | |
| 17 | -|:-:|:-:|:-|:-| |
|
| 18 | -|[ATM](ATM)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]| |
|
| 19 | -|[BIRC3](BIRC3)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]| |
|
| 20 | -|[CARD11](CARD11)|1|[Study Overview](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]| |
|
| 21 | -|[CCND1](CCND1)|1, aSHM|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 22 | -|[DAZAP1](DAZAP1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 23 | -|[EWSR1](EWSR1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 24 | -|[HNRNPH1](HNRNPH1)|1, noncoding|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 25 | -|[KMT2D](KMT2D)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]| |
|
| 26 | -|[MEF2B](MEF2B)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 27 | -|[NFKBIE](NFKBIE)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]| |
|
| 28 | -|[NOTCH1](NOTCH1)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 29 | -|[NOTCH2](NOTCH2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@troenNOTCH2MutationsMarginal2008; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 30 | -|[NSD2](NSD2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 31 | -|[POT1](POT1)|1|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 32 | -|[RB1](RB1)|1|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]| |
|
| 33 | -|[S1PR1](S1PR1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 34 | -|[SMARCA4](SMARCA4)|1|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a]| |
|
| 35 | -|[SP140](SP140)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 36 | -|[SYNE1](SYNE1)|1|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 37 | -|[TERT](TERT)|1, noncoding|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 38 | -|[TLR2](TLR2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 39 | -|[TP53](TP53)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]| |
|
| 40 | -|[UBR5](UBR5)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 18 | +|[ATM](ATM)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]| |
|
| 19 | +|[BIRC3](BIRC3)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 20 | +|[CARD11](CARD11)|1|[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011]| |
|
| 21 | +|[CCND1](CCND1)|1, aSHM|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 22 | +|[DAZAP1](DAZAP1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 23 | +|[EWSR1](EWSR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 24 | +|[HNRNPH1](HNRNPH1)|1, noncoding|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 25 | +|[KMT2D](KMT2D)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020]| |
|
| 26 | +|[MEF2B](MEF2B)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 27 | +|[NFKBIE](NFKBIE)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]| |
|
| 28 | +|[NOTCH1](NOTCH1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]| |
|
| 29 | +|[NOTCH2](NOTCH2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019]| |
|
| 30 | +|[NSD2](NSD2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 31 | +|[POT1](POT1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 32 | +|[RB1](RB1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]| |
|
| 33 | +|[S1PR1](S1PR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 34 | +|[SMARCA4](SMARCA4)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 35 | +|[SP140](SP140)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 36 | +|[SYNE1](SYNE1)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 37 | +|[TERT](TERT)|1, noncoding|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 38 | +|[TLR2](TLR2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 39 | +|[TP53](TP53)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004]| |
|
| 40 | +|[UBR5](UBR5)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 41 | 41 | |
| 42 | 42 | ## Tier 2 MCL genes |
| 43 | 43 | |
| 44 | 44 | ### *46 total* |
| 45 | 45 | |
| 46 | 46 | |Gene|Tier| First MCL evidence | Other entities | |
| 47 | -|:-:|:-:|:-|:-| |
|
| 48 | -|[ABCA3](ABCA3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 49 | -|[ABCC9](ABCC9)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 50 | -|[ANK2](ANK2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 47 | +|:-:|:-:|:--|:-| |
|
| 48 | +|[ABCA3](ABCA3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 49 | +|[ABCC9](ABCC9)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 50 | +|[ANK2](ANK2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 51 | 51 | |[ARID1B](ARID1B)|2||[@reddyGeneticFunctionalDrivers2017]| |
| 52 | -|[ATP11C](ATP11C)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 53 | -|[B2M](B2M)|2|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 54 | -|[BCOR](BCOR)|2|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 55 | -|[CDH8](CDH8)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 56 | -|[CHMP4C](CHMP4C)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 57 | -|[COL11A1](COL11A1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 58 | -|[COL16A1](COL16A1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 59 | -|[CRYBG3](CRYBG3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 60 | -|[CTNNA2](CTNNA2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 61 | -|[DCP1B](DCP1B)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 62 | -|[DHDH](DHDH)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 63 | -|[DLC1](DLC1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 64 | -|[DLGAP2](DLGAP2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 65 | -|[DNAJC6](DNAJC6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 66 | -|[EIF2AK4](EIF2AK4)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 67 | -|[ESX1](ESX1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 68 | -|[FAT4](FAT4)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]| |
|
| 69 | -|[GRIN2A](GRIN2A)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 70 | -|[HEPH](HEPH)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 71 | -|[KCNC2](KCNC2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 72 | -|[KIAA1671](KIAA1671)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 73 | -|[KMT2C](KMT2C)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]| |
|
| 74 | -|[LUZP4](LUZP4)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 75 | -|[MRGPRF](MRGPRF)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 76 | -|[NIN](NIN)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 77 | -|[OGDHL](OGDHL)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 78 | -|[PCDHB2](PCDHB2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 79 | -|[PCSK2](PCSK2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 80 | -|[PDLIM3](PDLIM3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 81 | -|[PLXNB3](PLXNB3)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 82 | -|[RGS4](RGS4)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 83 | -|[ROBO2](ROBO2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 84 | -|[SALL3](SALL3)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]| |
|
| 85 | -|[SI](SI)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 86 | -|[SLC17A6](SLC17A6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 87 | -|[SMARCB1](SMARCB1)|2|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 88 | -|[SMC1A](SMC1A)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 89 | -|[TBC1D26](TBC1D26)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 90 | -|[TNRC6B](TNRC6B)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 91 | -|[TRPM6](TRPM6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 92 | -|[ZNF117](ZNF117)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 93 | -|[ZNF296](ZNF296)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 52 | +|[ATP11C](ATP11C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 53 | +|[B2M](B2M)|2|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 54 | +|[BCOR](BCOR)|2|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 55 | +|[CDH8](CDH8)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 56 | +|[CHMP4C](CHMP4C)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 57 | +|[COL11A1](COL11A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 58 | +|[COL16A1](COL16A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 59 | +|[CRYBG3](CRYBG3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 60 | +|[CTNNA2](CTNNA2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 61 | +|[DCP1B](DCP1B)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 62 | +|[DHDH](DHDH)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 63 | +|[DLC1](DLC1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 64 | +|[DLGAP2](DLGAP2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 65 | +|[DNAJC6](DNAJC6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 66 | +|[EIF2AK4](EIF2AK4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 67 | +|[ESX1](ESX1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 68 | +|[FAT4](FAT4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@parryWholeExomeSequencing2013; @morinMutationalStructuralAnalysis2013]| |
|
| 69 | +|[GRIN2A](GRIN2A)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 70 | +|[HEPH](HEPH)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 71 | +|[KCNC2](KCNC2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 72 | +|[KIAA1671](KIAA1671)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 73 | +|[KMT2C](KMT2C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]| |
|
| 74 | +|[LUZP4](LUZP4)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 75 | +|[MRGPRF](MRGPRF)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 76 | +|[NIN](NIN)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 77 | +|[OGDHL](OGDHL)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 78 | +|[PCDHB2](PCDHB2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 79 | +|[PCSK2](PCSK2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 80 | +|[PDLIM3](PDLIM3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 81 | +|[PLXNB3](PLXNB3)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 82 | +|[RGS4](RGS4)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 83 | +|[ROBO2](ROBO2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 84 | +|[SALL3](SALL3)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]| |
|
| 85 | +|[SI](SI)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 86 | +|[SLC17A6](SLC17A6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 87 | +|[SMARCB1](SMARCB1)|2|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 88 | +|[SMC1A](SMC1A)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 89 | +|[TBC1D26](TBC1D26)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 90 | +|[TNRC6B](TNRC6B)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 91 | +|[TRPM6](TRPM6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 92 | +|[ZNF117](ZNF117)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 93 | +|[ZNF296](ZNF296)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 94 | 94 | |
| 95 | 95 | |
| 96 | 96 | # References |
MZL_genes.md
| ... | ... | @@ -7,174 +7,137 @@ link-citations: true |
| 7 | 7 | |
| 8 | 8 | ## Origins of MZL genes |
| 9 | 9 | |
| 10 | - |
|
| 11 | -```mermaid |
|
| 12 | ---- |
|
| 13 | -config: |
|
| 14 | - sankey: |
|
| 15 | - showValues: false |
|
| 16 | - linkColor: target |
|
| 17 | - width: 800 |
|
| 18 | - height: 550 |
|
| 19 | - nodeAlignment: right |
|
| 20 | ---- |
|
| 21 | -sankey-beta |
|
| 22 | -Vandenbrand 2017, Tier 2 MZL genes, 2 |
|
| 23 | -Rossi 2012, Tier 1 MZL genes, 10 |
|
| 24 | -Rossi 2012, Tier 2 MZL genes, 11 |
|
| 25 | -Yan 2012, Tier 1 MZL genes, 2 |
|
| 26 | -Parry 2013, Tier 2 MZL genes, 7 |
|
| 27 | -Spina 2016, Tier 1 MZL genes, 8 |
|
| 28 | -Spina 2016, Tier 2 MZL genes, 23 |
|
| 29 | -Jallades 2017, Tier 1 MZL genes, 2 |
|
| 30 | -Jallades 2017, Tier 2 MZL genes, 26 |
|
| 31 | -Rossi 2011, Tier 1 MZL genes, 4 |
|
| 32 | -Rossi 2011, Tier 2 MZL genes, 1 |
|
| 33 | -MZL genes, MZL-exome, 28 |
|
| 34 | -MZL-exome, Jallades 2017, 28 |
|
| 35 | -MZL genes, MZL-Sanger, 5 |
|
| 36 | -MZL-Sanger, Rossi 2011, 5 |
|
| 37 | -MZL genes, MZL-exome/panel, 31 |
|
| 38 | -MZL-exome/panel, Spina 2016, 31 |
|
| 39 | -MZL genes, MZL-exome, 21 |
|
| 40 | -MZL-exome, Rossi 2012, 21 |
|
| 41 | -MZL genes, MZL-panel, 2 |
|
| 42 | -MZL-panel, Vandenbrand 2017, 2 |
|
| 43 | -MZL genes, MZL-Panel, 2 |
|
| 44 | -MZL-Panel, Yan 2012, 2 |
|
| 45 | -MZL genes, MZL-exome, 7 |
|
| 46 | -MZL-exome, Parry 2013, 7 |
|
| 47 | -``` |
|
| 10 | + |
|
| 48 | 11 | |
| 49 | 12 | ## Tier 1 MZL genes |
| 50 | 13 | |
| 51 | 14 | ### *42 total* |
| 52 | 15 | |
| 53 | 16 | |Gene|Tier| First MZL evidence | Other entities | |
| 54 | -|:-:|:-:|:-|:-| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 55 | 18 | |[ACTB](ACTB)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
| 56 | -|[ARID1A](ARID1A)|1|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 57 | -|[ATM](ATM)|1|[@braggioGenomicAnalysisMarginal2012]|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]| |
|
| 58 | -|[BCL10](BCL10)|1|[@spinaGeneticsNodalMarginal2016b]|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]| |
|
| 59 | -|[BCL7A](BCL7A)|1||[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 60 | -|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 61 | -|[BRAF](BRAF)|1||[@tiacciBRAFMutationsHairycell2011a; @loveGeneticLandscapeMutations2012]| |
|
| 62 | -|[BTG1](BTG1)|1||[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 63 | -|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a]|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 64 | -|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]| |
|
| 65 | -|[CXCR4](CXCR4)|1||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]| |
|
| 66 | -|[DTX1](DTX1)|1|[@rossiCodingGenomeSplenic2012c]|[@schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023; @paneaWholeGenomeLandscape2019]| |
|
| 67 | -|[EP300](EP300)|1|[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]| |
|
| 68 | -|[EZH2](EZH2)|1||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 69 | -|[FAS](FAS)|1|[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]| |
|
| 70 | -|[FAT1](FAT1)|1|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 71 | -|[FOXO1](FOXO1)|1||[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 20 | +|[ATM](ATM)|1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)[@braggioGenomicAnalysisMarginal2012]|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]| |
|
| 21 | +|[BCL10](BCL10)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 22 | +|[BCL7A](BCL7A)|1||[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 23 | +|[BIRC3](BIRC3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 24 | +|[BRAF](BRAF)|1||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]| |
|
| 25 | +|[BTG1](BTG1)|1||[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 26 | +|[CARD11](CARD11)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016]| |
|
| 27 | +|[CCND3](CCND3)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | +|[CXCR4](CXCR4)|1||[@paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]| |
|
| 29 | +|[DTX1](DTX1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @loveGeneticLandscapeMutations2012]| |
|
| 30 | +|[EP300](EP300)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]| |
|
| 31 | +|[EZH2](EZH2)|1||[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]| |
|
| 32 | +|[FAS](FAS)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]| |
|
| 33 | +|[FAT1](FAT1)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 34 | +|[FOXO1](FOXO1)|1||[@morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 72 | 35 | |[H1-4](H1-4)|1||| |
| 73 | 36 | |[H1-5](H1-5)|1||| |
| 74 | -|[ID3](ID3)|1|[@spinaGeneticsNodalMarginal2016b]|[@richterRecurrentMutationID32012a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 75 | -|[KLF2](KLF2)|1|[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]| |
|
| 76 | -|[KLHL6](KLHL6)|1|[@ganapathiGeneticLandscapeDural2016]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 77 | -|[KMT2D](KMT2D)|1|[@rossiCodingGenomeSplenic2012c]|[@deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]| |
|
| 78 | -|[MAP3K14](MAP3K14)|1|[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]| |
|
| 37 | +|[ID3](ID3)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]| |
|
| 38 | +|[KLF2](KLF2)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]| |
|
| 39 | +|[KLHL6](KLHL6)|1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 40 | +|[KMT2D](KMT2D)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020]| |
|
| 41 | +|[MAP3K14](MAP3K14)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]| |
|
| 79 | 42 | |[MPEG1](MPEG1)|1||[@morinMutationalStructuralAnalysis2013]| |
| 80 | -|[MYD88](MYD88)|1|[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]| |
|
| 81 | -|[NCOR2](NCOR2)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 82 | -|[NOL9](NOL9)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 83 | -|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c]|[@loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]| |
|
| 84 | -|[NOTCH2](NOTCH2)|1|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]| |
|
| 43 | +|[MYD88](MYD88)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]| |
|
| 44 | +|[NCOR2](NCOR2)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 45 | +|[NOL9](NOL9)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 46 | +|[NOTCH1](NOTCH1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013]| |
|
| 47 | +|[NOTCH2](NOTCH2)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013]| |
|
| 85 | 48 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 86 | 49 | |[POU2AF1](POU2AF1)|1||[@krysiakRecurrentSomaticMutations2017b]| |
| 87 | -|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 88 | -|[SIN3A](SIN3A)|1|[@rossiCodingGenomeSplenic2012c]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 89 | -|[SOCS1](SOCS1)|1||[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]| |
|
| 90 | -|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 91 | -|[STAT6](STAT6)|1||[@yildizActivatingSTAT6Mutations2015c; @ritzRecurrentMutationsSTAT62009a]| |
|
| 92 | -|[TBL1XR1](TBL1XR1)|1|[@rossiCodingGenomeSplenic2012c]|[@mareschalWholeExomeSequencing2016]| |
|
| 93 | -|[TNFAIP3](TNFAIP3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 94 | -|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @cheungAcquiredTNFRSF14Mutations2010a]| |
|
| 95 | -|[TP53](TP53)|1|[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 96 | -|[TRAF3](TRAF3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a; @pasqualucciAnalysisCodingGenome2011]| |
|
| 50 | +|[PTPRD](PTPRD)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 51 | +|[SIN3A](SIN3A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 52 | +|[SOCS1](SOCS1)|1||[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]| |
|
| 53 | +|[SPEN](SPEN)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 54 | +|[STAT6](STAT6)|1||[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]| |
|
| 55 | +|[TBL1XR1](TBL1XR1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 56 | +|[TNFAIP3](TNFAIP3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 57 | +|[TNFRSF14](TNFRSF14)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@cheungAcquiredTNFRSF14Mutations2010a; @morinFrequentMutationHistonemodifying2011]| |
|
| 58 | +|[TP53](TP53)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 59 | +|[TRAF3](TRAF3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]| |
|
| 97 | 60 | |
| 98 | 61 | ## Tier 2 MZL genes |
| 99 | 62 | |
| 100 | 63 | ### *74 total* |
| 101 | 64 | |
| 102 | 65 | |Gene|Tier| First MZL evidence | Other entities | |
| 103 | -|:-:|:-:|:-|:-| |
|
| 104 | -|[ABCA13](ABCA13)|2|[@spinaGeneticsNodalMarginal2016b]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 105 | -|[ACTG1](ACTG1)|2|[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b; @deschGenotypingCirculatingTumor2020]| |
|
| 106 | -|[ADD2](ADD2)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 107 | -|[AMN](AMN)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 108 | -|[AMOTL1](AMOTL1)|2|[@parryWholeExomeSequencing2013]|| |
|
| 109 | -|[AOC2](AOC2)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 110 | -|[ARHGAP20](ARHGAP20)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 111 | -|[ARHGEF15](ARHGEF15)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 112 | -|[ARHGEF17](ARHGEF17)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 113 | -|[BCOR](BCOR)|2|[@jalladesExomeSequencingIdentifies2017]|[@nadeuGenomicEpigenomicInsights2020b]| |
|
| 114 | -|[C6orf103](C6orf103)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 115 | -|[CBFA2T3](CBFA2T3)|2|[@parryWholeExomeSequencing2013]|| |
|
| 116 | -|[CD79A](CD79A)|2|[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 117 | -|[CD9B](CD9B)|2|[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 118 | -|[CDC42BPB](CDC42BPB)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 119 | -|[CDKN2A](CDKN2A)|2|[@spinaGeneticsNodalMarginal2016b]|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 120 | -|[CLGN](CLGN)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 121 | -|[CNKSR2](CNKSR2)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 122 | -|[CREBBP](CREBBP)|2|[@parryWholeExomeSequencing2013]|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 123 | -|[DNAH5](DNAH5)|2|[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013]| |
|
| 124 | -|[DNAH7](DNAH7)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 125 | -|[DNAI1](DNAI1)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 126 | -|[DOCK6](DOCK6)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 66 | +|:-:|:-:|:--|:-| |
|
| 67 | +|[ABCA13](ABCA13)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 68 | +|[ACTG1](ACTG1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b; @deschGenotypingCirculatingTumor2020]| |
|
| 69 | +|[ADD2](ADD2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 70 | +|[AMN](AMN)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 71 | +|[AMOTL1](AMOTL1)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 72 | +|[AOC2](AOC2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 73 | +|[ARHGAP20](ARHGAP20)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 74 | +|[ARHGEF15](ARHGEF15)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 75 | +|[ARHGEF17](ARHGEF17)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 76 | +|[BCOR](BCOR)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@nadeuGenomicEpigenomicInsights2020b]| |
|
| 77 | +|[C6orf103](C6orf103)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 78 | +|[CBFA2T3](CBFA2T3)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 79 | +|[CD79A](CD79A)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 80 | +|[CD9B](CD9B)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 81 | +|[CDC42BPB](CDC42BPB)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 82 | +|[CDKN2A](CDKN2A)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 83 | +|[CLGN](CLGN)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 84 | +|[CNBP](CNBP)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 85 | +|[CNKSR2](CNKSR2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 86 | +|[CREBBP](CREBBP)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @loveGeneticLandscapeMutations2012]| |
|
| 87 | +|[DNAH5](DNAH5)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013]| |
|
| 88 | +|[DNAH7](DNAH7)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 89 | +|[DNAI1](DNAI1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 90 | +|[DOCK6](DOCK6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 127 | 91 | |[DSP](DSP)|2||| |
| 128 | 92 | |[DTNB](DTNB)|2||| |
| 129 | -|[DTX3L](DTX3L)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 130 | -|[EGR1](EGR1)|2|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 131 | -|[EGR2](EGR2)|2|[@rossiCodingGenomeSplenic2012c]|| |
|
| 132 | -|[EZH1](EZH1)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 133 | -|[FAT4](FAT4)|2|[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]| |
|
| 134 | -|[FBXO11](FBXO11)|2|[@parryWholeExomeSequencing2013]|[@hubschmannMutationalMechanismsShaping2021b; @richterRecurrentMutationID32012a]| |
|
| 135 | -|[GPR98](GPR98)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 136 | -|[GPS2](GPS2)|2|[@rossiCodingGenomeSplenic2012c]|| |
|
| 137 | -|[HIST1H1D](HIST1H1D)|2|[@jalladesExomeSequencingIdentifies2017]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]| |
|
| 138 | -|[HIST1H2AD](HIST1H2AD)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 139 | -|[HIST1H2AG](HIST1H2AG)|2|[@rossiCodingGenomeSplenic2012c]|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 140 | -|[HIST1H2BK](HIST1H2BK)|2|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019]| |
|
| 141 | -|[HIST4H4](HIST4H4)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 142 | -|[HRAS](HRAS)|2|[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 143 | -|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a]|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 144 | -|[KAT6A](KAT6A)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 145 | -|[KDM6A](KDM6A)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 146 | -|[KIF26A](KIF26A)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 147 | -|[LRP1B](LRP1B)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 148 | -|[MCRS1](MCRS1)|2|[@rossiCodingGenomeSplenic2012c]|| |
|
| 149 | -|[MGA](MGA)|2|[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 150 | -|[MSL2](MSL2)|2|[@rossiCodingGenomeSplenic2012c]|| |
|
| 151 | -|[MYC](MYC)|2|[@jalladesExomeSequencingIdentifies2017]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]| |
|
| 152 | -|[MYLK](MYLK)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 153 | -|[NCOA6](NCOA6)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 154 | -|[NRAS](NRAS)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 155 | -|[PACRG](PACRG)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 156 | -|[PARK2](PARK2)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 157 | -|[PLA2G4D](PLA2G4D)|2|[@parryWholeExomeSequencing2013]|| |
|
| 158 | -|[PLXNB3](PLXNB3)|2|[@spinaGeneticsNodalMarginal2016b]|[@zhangGenomicLandscapeMantle2014]| |
|
| 159 | -|[RAF1](RAF1)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 93 | +|[DTX3L](DTX3L)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 94 | +|[EGR1](EGR1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 95 | +|[EGR2](EGR2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 96 | +|[EZH1](EZH1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 97 | +|[FAT4](FAT4)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]| |
|
| 98 | +|[FBXO11](FBXO11)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 99 | +|[GPR98](GPR98)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 100 | +|[GPS2](GPS2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 101 | +|[HIST1H1D](HIST1H1D)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 102 | +|[HIST1H2AD](HIST1H2AD)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 103 | +|[HIST1H2AG](HIST1H2AG)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 104 | +|[HIST1H2BK](HIST1H2BK)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019]| |
|
| 105 | +|[HIST4H4](HIST4H4)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 106 | +|[HRAS](HRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 107 | +|[IKBKB](IKBKB)|2|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]| |
|
| 108 | +|[KAT6A](KAT6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 109 | +|[KDM6A](KDM6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 110 | +|[KIF26A](KIF26A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 111 | +|[LRP1B](LRP1B)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 112 | +|[MCRS1](MCRS1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 113 | +|[MGA](MGA)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 114 | +|[MSL2](MSL2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 115 | +|[MYC](MYC)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992]| |
|
| 116 | +|[MYLK](MYLK)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 117 | +|[NCOA6](NCOA6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 118 | +|[NRAS](NRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 119 | +|[PACRG](PACRG)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 120 | +|[PARK2](PARK2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 121 | +|[PLA2G4D](PLA2G4D)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 122 | +|[PLXNB3](PLXNB3)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@zhangGenomicLandscapeMantle2014]| |
|
| 123 | +|[RAF1](RAF1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 160 | 124 | |[RAPGEF2](RAPGEF2)|2||| |
| 161 | -|[RCOR1](RCOR1)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 162 | -|[RFTN1](RFTN1)|2||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 163 | -|[ROCK1](ROCK1)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 164 | -|[RPL1L](RPL1L)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 165 | -|[SAMD5](SAMD5)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 166 | -|[SCG3](SCG3)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 167 | -|[STXBP5](STXBP5)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 168 | -|[SWAP70](SWAP70)|2|[@rossiCodingGenomeSplenic2012c]|| |
|
| 169 | -|[TAF1](TAF1)|2|[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 170 | -|[TBK1](TBK1)|2|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 171 | -|[TCTN2](TCTN2)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 172 | -|[TNIP2](TNIP2)|2|[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 173 | -|[TRRAP](TRRAP)|2|[@rossiCodingGenomeSplenic2012c]|[@parryWholeExomeSequencing2013]| |
|
| 174 | -|[USH2A](USH2A)|2|[@parryWholeExomeSequencing2013]|| |
|
| 175 | -|[WAC](WAC)|2|[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 176 | -|[WNK1](WNK1)|2|[@jalladesExomeSequencingIdentifies2017]|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 177 | -|[ZNF9](ZNF9)|2|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 125 | +|[RCOR1](RCOR1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 126 | +|[RFTN1](RFTN1)|2||[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018]| |
|
| 127 | +|[ROCK1](ROCK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 128 | +|[RPL1L](RPL1L)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 129 | +|[SAMD5](SAMD5)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 130 | +|[SCG3](SCG3)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 131 | +|[STXBP5](STXBP5)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 132 | +|[SWAP70](SWAP70)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 133 | +|[TAF1](TAF1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 134 | +|[TBK1](TBK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 135 | +|[TCTN2](TCTN2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 136 | +|[TNIP2](TNIP2)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 137 | +|[TRRAP](TRRAP)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@parryWholeExomeSequencing2013]| |
|
| 138 | +|[USH2A](USH2A)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 139 | +|[WAC](WAC)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 140 | +|[WNK1](WNK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 178 | 141 | |
| 179 | 142 | |
| 180 | 143 | # References |
PMBL_genes.md
| ... | ... | @@ -14,172 +14,172 @@ link-citations: true |
| 14 | 14 | ### *76 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First PMBL evidence | Other entities | |
| 17 | -|:-:|:-:|:-|:-| |
|
| 18 | -|[ACTB](ACTB)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | -|[ARID1A](ARID1A)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]| |
|
| 20 | -|[ARID5B](ARID5B)|1|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 21 | -|[B2M](B2M)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@pararajalingamCodingNoncodingDrivers2020; @morinFrequentMutationHistonemodifying2011]| |
|
| 22 | -|[BIRC6](BIRC6)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 23 | -|[BTG1](BTG1)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 24 | -|[CD58](CD58)|1|[Study Overview](papers/schneiderAlterationsCD58Gene2015a)[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 25 | -|[CD83](CD83)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013]| |
|
| 26 | -|[CDKN2A](CDKN2A)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]| |
|
| 17 | +|:-:|:-:|:--|:-| |
|
| 18 | +|[ACTB](ACTB)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 20 | +|[ARID5B](ARID5B)|1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 21 | +|[B2M](B2M)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 22 | +|[BIRC6](BIRC6)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 23 | +|[BTG1](BTG1)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]| |
|
| 24 | +|[CD58](CD58)|1|[Schneider et al](papers/schneiderAlterationsCD58Gene2015a)[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 25 | +|[CD83](CD83)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 26 | +|[CDKN2A](CDKN2A)|1||[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 27 | 27 | |[CHD8](CHD8)|1||[@reddyGeneticFunctionalDrivers2017; @grandeGenomewideDiscoverySomatic2019]| |
| 28 | -|[CIITA](CIITA)|1|[Study Overview](papers/mottokGenomicAlterationsCIITA2015b)[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 29 | -|[CISH](CISH)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 30 | -|[CREBBP](CREBBP)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @parryWholeExomeSequencing2013]| |
|
| 31 | -|[CSF2RB](CSF2RB)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 32 | -|[DDX3X](DDX3X)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 33 | -|[DTX1](DTX1)|1|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @loveGeneticLandscapeMutations2012]| |
|
| 34 | -|[DUSP2](DUSP2)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 35 | -|[EBF1](EBF1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]| |
|
| 36 | -|[EEF1A1](EEF1A1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 28 | +|[CIITA](CIITA)|1|[Mottok et al](papers/mottokGenomicAlterationsCIITA2015b)[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 29 | +|[CISH](CISH)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 30 | +|[CREBBP](CREBBP)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 31 | +|[CSF2RB](CSF2RB)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 32 | +|[DDX3X](DDX3X)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 33 | +|[DTX1](DTX1)|1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 34 | +|[DUSP2](DUSP2)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 35 | +|[EBF1](EBF1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@bohleRoleEarlyBcell2013; @thomasGeneticSubgroupsInform2023]| |
|
| 36 | +|[EEF1A1](EEF1A1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 37 | 37 | |[ETS1](ETS1)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
| 38 | 38 | |[EWSR1](EWSR1)|1||[@pararajalingamCodingNoncodingDrivers2020]| |
| 39 | -|[EZH2](EZH2)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]| |
|
| 39 | +|[EZH2](EZH2)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a]| |
|
| 40 | 40 | |[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]| |
| 41 | 41 | |[FAT1](FAT1)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 42 | 42 | |[FAT4](FAT4)|1||[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]| |
| 43 | -|[GNA13](GNA13)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]| |
|
| 44 | -|[HIST1H1B](HIST1H1B)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 45 | -|[HIST1H1C](HIST1H1C)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 46 | -|[HIST1H1D](HIST1H1D)|1||[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]| |
|
| 47 | -|[HIST1H1E](HIST1H1E)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 48 | -|[HLA-B](HLA-B)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 49 | -|[IL4R](IL4R)|1|[Study Overview](papers/viganoSomaticIL4RMutations2018b)[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 50 | -|[IRF8](IRF8)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 51 | -|[ITPKB](ITPKB)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 52 | -|[JAK1](JAK1)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 53 | -|[KMT2C](KMT2C)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]| |
|
| 54 | -|[LTB](LTB)|1|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]| |
|
| 55 | -|[MAP3K14](MAP3K14)|1|[Study Overview](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]| |
|
| 56 | -|[MS4A1](MS4A1)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]| |
|
| 57 | -|[NFKBIA](NFKBIA)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@russler-germainMutationsAssociatedProgression2023b; @lakeMutationsNFKBIAEncoding2009]| |
|
| 58 | -|[NFKBIE](NFKBIE)|1|[Study Overview](papers/mansouriFrequentNFKBIEDeletions2016)[@mansouriFrequentNFKBIEDeletions2016]|[@pararajalingamCodingNoncodingDrivers2020; @morinGeneticLandscapesRelapsed2016]| |
|
| 43 | +|[GNA13](GNA13)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]| |
|
| 44 | +|[HIST1H1B](HIST1H1B)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@krysiakRecurrentSomaticMutations2017b; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 45 | +|[HIST1H1C](HIST1H1C)|1||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 46 | +|[HIST1H1D](HIST1H1D)|1||[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 47 | +|[HIST1H1E](HIST1H1E)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @grandeGenomewideDiscoverySomatic2019]| |
|
| 48 | +|[HLA-B](HLA-B)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 49 | +|[IL4R](IL4R)|1|[Vigano et al](papers/viganoSomaticIL4RMutations2018b)[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 50 | +|[IRF8](IRF8)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 51 | +|[ITPKB](ITPKB)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 52 | +|[JAK1](JAK1)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 53 | +|[KMT2C](KMT2C)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 54 | +|[LTB](LTB)|1|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@paneaWholeGenomeLandscape2019; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 55 | +|[MAP3K14](MAP3K14)|1|[Otto et al](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]| |
|
| 56 | +|[MS4A1](MS4A1)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]| |
|
| 57 | +|[NFKBIA](NFKBIA)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lakeMutationsNFKBIAEncoding2009; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 58 | +|[NFKBIE](NFKBIE)|1|[Mansouri et al](papers/mansouriFrequentNFKBIEDeletions2016)[@mansouriFrequentNFKBIEDeletions2016]|[@morinGeneticLandscapesRelapsed2016; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 59 | 59 | |[OSBPL10](OSBPL10)|1||[@arthurGenomewideDiscoverySomatic2018]| |
| 60 | 60 | |[P2RY8](P2RY8)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]| |
| 61 | 61 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 62 | 62 | |[PHIP](PHIP)|1||| |
| 63 | -|[PIM1](PIM1)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 64 | -|[PIM2](PIM2)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]| |
|
| 65 | -|[PRKDC](PRKDC)|1||[@hubschmannMutationalMechanismsShaping2021b; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 66 | -|[PTPN1](PTPN1)|1|[Study Overview](papers/gunawardanaRecurrentSomaticMutations2014c)[@gunawardanaRecurrentSomaticMutations2014c]|| |
|
| 63 | +|[PIM1](PIM1)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 64 | +|[PIM2](PIM2)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]| |
|
| 65 | +|[PRKDC](PRKDC)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 66 | +|[PTPN1](PTPN1)|1|[Gunawardana et al](papers/gunawardanaRecurrentSomaticMutations2014c)[@gunawardanaRecurrentSomaticMutations2014c]|| |
|
| 67 | 67 | |[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 68 | 68 | |[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]| |
| 69 | 69 | |[S1PR2](S1PR2)|1||[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]| |
| 70 | -|[SGK1](SGK1)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 71 | -|[SIN3A](SIN3A)|1||[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]| |
|
| 70 | +|[SGK1](SGK1)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 71 | +|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 72 | 72 | |[SMARCA2](SMARCA2)|1||| |
| 73 | -|[SMARCA4](SMARCA4)|1||[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 74 | -|[SOCS1](SOCS1)|1|[Study Overview](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 75 | -|[SPEN](SPEN)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]| |
|
| 73 | +|[SMARCA4](SMARCA4)|1||[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 74 | +|[SOCS1](SOCS1)|1|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 75 | +|[SPEN](SPEN)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]| |
|
| 76 | 76 | |[STAT3](STAT3)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 77 | -|[STAT6](STAT6)|1|[Study Overview](papers/ritzRecurrentMutationsSTAT62009a)[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]| |
|
| 77 | +|[STAT6](STAT6)|1|[Ritz et al](papers/ritzRecurrentMutationsSTAT62009a)[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]| |
|
| 78 | 78 | |[TAP1](TAP1)|1||[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| 79 | 79 | |[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
| 80 | 80 | |[TCF3](TCF3)|1||[@schmitzBurkittLymphomaPathogenesis2012]| |
| 81 | 81 | |[TET3](TET3)|1||| |
| 82 | 82 | |[TMSB4X](TMSB4X)|1||[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 83 | -|[TNFAIP3](TNFAIP3)|1|[Study Overview](papers/schmitzTNFAIP3A20Tumor2009a)[@schmitzTNFAIP3A20Tumor2009a]|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a]| |
|
| 83 | +|[TNFAIP3](TNFAIP3)|1|[Schmitz et al](papers/schmitzTNFAIP3A20Tumor2009a)[@schmitzTNFAIP3A20Tumor2009a]|[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]| |
|
| 84 | 84 | |[TNFRSF1B](TNFRSF1B)|1||| |
| 85 | -|[TP53](TP53)|1|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 86 | -|[TRAF3](TRAF3)|1|[Study Overview](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]| |
|
| 87 | -|[UBE2A](UBE2A)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 88 | -|[UBR5](UBR5)|1||[@pararajalingamCodingNoncodingDrivers2020; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 85 | +|[TP53](TP53)|1|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a; @beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011]| |
|
| 86 | +|[TRAF3](TRAF3)|1|[Otto et al](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]| |
|
| 87 | +|[UBE2A](UBE2A)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 88 | +|[UBR5](UBR5)|1||[@zhangGeneticHeterogeneityDiffuse2013; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 89 | 89 | |[UNC5C](UNC5C)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 90 | 90 | |[VPS13B](VPS13B)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 91 | -|[WEE1](WEE1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 92 | -|[XPO1](XPO1)|1|[Study Overview](papers/jardinRecurrentMutationsExportin2016a)[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]| |
|
| 93 | -|[ZFP36L1](ZFP36L1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 91 | +|[WEE1](WEE1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 92 | +|[XPO1](XPO1)|1|[Jardin et al](papers/jardinRecurrentMutationsExportin2016a)[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]| |
|
| 93 | +|[ZFP36L1](ZFP36L1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 94 | 94 | |
| 95 | 95 | ## Tier 2 PMBL genes |
| 96 | 96 | |
| 97 | 97 | ### *82 total* |
| 98 | 98 | |
| 99 | 99 | |Gene|Tier| First PMBL evidence | Other entities | |
| 100 | -|:-:|:-:|:-|:-| |
|
| 101 | -|[ABCA13](ABCA13)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 102 | -|[ACTG1](ACTG1)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b]| |
|
| 103 | -|[AKAP6](AKAP6)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 104 | -|[ARIH2](ARIH2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 105 | -|[AXDND1](AXDND1)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 106 | -|[BCL2](BCL2)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992; @morinFrequentMutationHistonemodifying2011]| |
|
| 107 | -|[BCL7A](BCL7A)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018]| |
|
| 108 | -|[BIRC3](BIRC3)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]| |
|
| 109 | -|[CCND3](CCND3)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017]| |
|
| 110 | -|[CDH2](CDH2)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
|
| 111 | -|[CDH5](CDH5)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 112 | -|[CXCR5](CXCR5)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 113 | -|[DGKB](DGKB)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 114 | -|[DMD](DMD)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 115 | -|[DNAH12](DNAH12)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 116 | -|[EGR1](EGR1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 117 | -|[EPHA7](EPHA7)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 118 | -|[EZR](EZR)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
|
| 119 | -|[FOXO1](FOXO1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011]| |
|
| 120 | -|[GCSAM](GCSAM)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 121 | -|[GPR126](GPR126)|2|[Study Overview](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|| |
|
| 122 | -|[HECW2](HECW2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 123 | -|[HELLS](HELLS)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 124 | -|[HIST1H2BC](HIST1H2BC)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 125 | -|[HIST1H3B](HIST1H3B)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 126 | -|[HIST1H4C](HIST1H4C)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 127 | -|[HIST1H4E](HIST1H4E)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 128 | -|[HIST1H4J](HIST1H4J)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]| |
|
| 129 | -|[HLA-A](HLA-A)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 130 | -|[HLA-C](HLA-C)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 131 | -|[HRNR](HRNR)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 132 | -|[IGLL5](IGLL5)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 133 | -|[IKBKB](IKBKB)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiAlterationBIRC3Multiple2011a; @reddyGeneticFunctionalDrivers2017]| |
|
| 134 | -|[IL13RA1](IL13RA1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 135 | -|[IL1RAPL2](IL1RAPL2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 136 | -|[IRF2BP2](IRF2BP2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 137 | -|[IRF4](IRF4)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 100 | +|:-:|:-:|:--|:-| |
|
| 101 | +|[ABCA13](ABCA13)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 102 | +|[ACTG1](ACTG1)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b]| |
|
| 103 | +|[AKAP6](AKAP6)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 104 | +|[ARIH2](ARIH2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 105 | +|[AXDND1](AXDND1)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 106 | +|[BCL2](BCL2)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 107 | +|[BCL7A](BCL7A)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018]| |
|
| 108 | +|[BIRC3](BIRC3)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]| |
|
| 109 | +|[CCND3](CCND3)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011]| |
|
| 110 | +|[CDH2](CDH2)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
|
| 111 | +|[CDH5](CDH5)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 112 | +|[CXCR5](CXCR5)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 113 | +|[DGKB](DGKB)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 114 | +|[DMD](DMD)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 115 | +|[DNAH12](DNAH12)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 116 | +|[EGR1](EGR1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 117 | +|[EPHA7](EPHA7)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 118 | +|[EZR](EZR)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
|
| 119 | +|[FOXO1](FOXO1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011]| |
|
| 120 | +|[GCSAM](GCSAM)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 121 | +|[GPR126](GPR126)|2|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|| |
|
| 122 | +|[HECW2](HECW2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 123 | +|[HELLS](HELLS)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 124 | +|[HIST1H2BC](HIST1H2BC)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 125 | +|[HIST1H3B](HIST1H3B)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 126 | +|[HIST1H4C](HIST1H4C)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 127 | +|[HIST1H4E](HIST1H4E)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 128 | +|[HIST1H4J](HIST1H4J)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]| |
|
| 129 | +|[HLA-A](HLA-A)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 130 | +|[HLA-C](HLA-C)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 131 | +|[HRNR](HRNR)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 132 | +|[IGLL5](IGLL5)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]| |
|
| 133 | +|[IKBKB](IKBKB)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiAlterationBIRC3Multiple2011a; @reddyGeneticFunctionalDrivers2017]| |
|
| 134 | +|[IL13RA1](IL13RA1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 135 | +|[IL1RAPL2](IL1RAPL2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 136 | +|[IRF2BP2](IRF2BP2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 137 | +|[IRF4](IRF4)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 138 | 138 | |[ITGB2](ITGB2)|2||| |
| 139 | -|[ITPR3](ITPR3)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]| |
|
| 140 | -|[JUNB](JUNB)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 141 | -|[KLF2](KLF2)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]| |
|
| 142 | -|[KMT2D](KMT2D)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013]| |
|
| 143 | -|[LIMD2](LIMD2)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 144 | -|[LPHN3](LPHN3)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 145 | -|[LRRN3](LRRN3)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]| |
|
| 146 | -|[MAGEC2](MAGEC2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 147 | -|[MCL1](MCL1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @reddyGeneticFunctionalDrivers2017]| |
|
| 148 | -|[MFHAS1](MFHAS1)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 149 | -|[MPDZ](MPDZ)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]| |
|
| 150 | -|[MYB](MYB)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 151 | -|[MYC](MYC)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]| |
|
| 152 | -|[NCOR2](NCOR2)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 153 | -|[NEK1](NEK1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 154 | -|[NFKB2](NFKB2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 139 | +|[ITPR3](ITPR3)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]| |
|
| 140 | +|[JUNB](JUNB)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 141 | +|[KLF2](KLF2)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017]| |
|
| 142 | +|[KMT2D](KMT2D)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]| |
|
| 143 | +|[LIMD2](LIMD2)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 144 | +|[LPHN3](LPHN3)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 145 | +|[LRRN3](LRRN3)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]| |
|
| 146 | +|[MAGEC2](MAGEC2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 147 | +|[MCL1](MCL1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @reddyGeneticFunctionalDrivers2017]| |
|
| 148 | +|[MFHAS1](MFHAS1)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 149 | +|[MPDZ](MPDZ)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]| |
|
| 150 | +|[MYB](MYB)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 151 | +|[MYC](MYC)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]| |
|
| 152 | +|[NCOR2](NCOR2)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 153 | +|[NEK1](NEK1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 154 | +|[NFKB2](NFKB2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 155 | 155 | |[NSD2](NSD2)|2||[@beaLandscapeSomaticMutations2013]| |
| 156 | -|[NUP214](NUP214)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 157 | -|[OR13C2](OR13C2)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 156 | +|[NUP214](NUP214)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 157 | +|[OR13C2](OR13C2)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 158 | 158 | |[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]| |
| 159 | 159 | |[PCDH7](PCDH7)|2||| |
| 160 | -|[PRUNE2](PRUNE2)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 161 | -|[RANBP2](RANBP2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 162 | -|[RBM38](RBM38)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 160 | +|[PRUNE2](PRUNE2)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 161 | +|[RANBP2](RANBP2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 162 | +|[RBM38](RBM38)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 163 | 163 | |[RDH12](RDH12)|2||| |
| 164 | -|[RELN](RELN)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 165 | -|[RFTN1](RFTN1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]| |
|
| 166 | -|[RGS1](RGS1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 164 | +|[RELN](RELN)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 165 | +|[RFTN1](RFTN1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]| |
|
| 166 | +|[RGS1](RGS1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 167 | 167 | |[SCN9A](SCN9A)|2||| |
| 168 | -|[SENP7](SENP7)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 169 | -|[SETD5](SETD5)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 170 | -|[SETDB1](SETDB1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 171 | -|[SIAH2](SIAH2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 168 | +|[SENP7](SENP7)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 169 | +|[SETD5](SETD5)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 170 | +|[SETDB1](SETDB1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 171 | +|[SIAH2](SIAH2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 172 | 172 | |[SMAD3](SMAD3)|2||| |
| 173 | -|[STAT5B](STAT5B)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 173 | +|[STAT5B](STAT5B)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 174 | 174 | |[STRAP](STRAP)|2||| |
| 175 | -|[TBC1D15](TBC1D15)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 176 | -|[TICRR](TICRR)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 177 | -|[TNIP1](TNIP1)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 178 | -|[TRIP11](TRIP11)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 179 | -|[VMP1](VMP1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 180 | -|[WDR87](WDR87)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 181 | -|[ZCCHC11](ZCCHC11)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 182 | -|[ZNF217](ZNF217)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 175 | +|[TBC1D15](TBC1D15)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 176 | +|[TICRR](TICRR)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 177 | +|[TNIP1](TNIP1)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 178 | +|[TRIP11](TRIP11)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 179 | +|[VMP1](VMP1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 180 | +|[WDR87](WDR87)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 181 | +|[ZCCHC11](ZCCHC11)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 182 | +|[ZNF217](ZNF217)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 183 | 183 | |
| 184 | 184 | |
| 185 | 185 | # References |