GGTLA4.md
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@@ -15,12 +15,7 @@ nocite: |
15 15
16 16
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
17 17
18
-|Entity|source |frequency (%)|
19
-|:------:|:---------------------:|:-------------:|
20
-|BL |GAMBL genomes+capture|NA |
21
-|BL |Thomas cohort |NA |
22
-|BL |Panea cohort |NA |
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-
18
+[[include:BL_GGTLA4.md]]
24 19
25 20
[[include:browser_GGTLA4.md]]
26 21
MIR142.md
... ...
@@ -18,20 +18,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
18 18
19 19
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
20 20
21
-|Entity|source |frequency (%)|
22
-|:------:|:---------------------:|:-------------:|
23
-|BL |GAMBL genomes+capture|NA |
24
-|BL |Thomas cohort |NA |
25
-|BL |Panea cohort |NA |
26
-|DLBCL |GAMBL genomes |NA |
27
-|DLBCL |Schmitz cohort |NA |
28
-|DLBCL |Reddy cohort |NA |
29
-|DLBCL |Chapuy cohort |NA |
30
-
31
-## Mutation pattern and selective pressure estimates
32
-
33
-|
34
-
21
+[[include:tables/BL_MIR142.md]]
35 22
36 23
## MIR142 Expression
37 24
![](images/gene_expression/MIR142_by_pathology.svg)
... ...
@@ -39,6 +26,6 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
39 26
<!-- BL: grandeGenomewideDiscoverySomatic2019 -->
40 27
<!-- DLBCL: kwanhianMicroRNA142Mutated202012b -->
41 28
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-[[include:mermaid_MIR142.md]]
29
+[[include:tables/mermaid_MIR142.md]]
43 30
44 31
## References
tables/BL_GGTLA4.md
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@@ -0,0 +1,42 @@
1
+<table class="table" style="margin-left: 0; margin-right: auto;">
2
+ <thead>
3
+ <tr>
4
+ <th style="text-align:left;"> pathology </th>
5
+ <th style="text-align:left;"> Samples </th>
6
+ <th style="text-align:right;"> Incidence </th>
7
+ <th style="text-align:left;"> CI </th>
8
+ </tr>
9
+ </thead>
10
+<tbody>
11
+ <tr>
12
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
13
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL without Panea </td>
14
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
15
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
16
+ </tr>
17
+ <tr>
18
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
19
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL with Panea </td>
20
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
21
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
22
+ </tr>
23
+ <tr>
24
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
25
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BLGSP </td>
26
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
27
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
28
+ </tr>
29
+ <tr>
30
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
31
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Zhou/ICGC </td>
32
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
33
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
34
+ </tr>
35
+ <tr>
36
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
37
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Panea </td>
38
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
39
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
40
+ </tr>
41
+</tbody>
42
+</table>
... ...
\ No newline at end of file
tables/BL_MIR142.md
... ...
@@ -0,0 +1,42 @@
1
+<table class="table" style="margin-left: 0; margin-right: auto;">
2
+ <thead>
3
+ <tr>
4
+ <th style="text-align:left;"> pathology </th>
5
+ <th style="text-align:left;"> Samples </th>
6
+ <th style="text-align:right;"> Incidence </th>
7
+ <th style="text-align:left;"> CI </th>
8
+ </tr>
9
+ </thead>
10
+<tbody>
11
+ <tr>
12
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
13
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL without Panea </td>
14
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
15
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
16
+ </tr>
17
+ <tr>
18
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
19
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL with Panea </td>
20
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
21
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
22
+ </tr>
23
+ <tr>
24
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
25
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BLGSP </td>
26
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
27
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
28
+ </tr>
29
+ <tr>
30
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
31
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Zhou/ICGC </td>
32
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
33
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
34
+ </tr>
35
+ <tr>
36
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BL </td>
37
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Panea </td>
38
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 245, 240, 255) !important;">0</span> </td>
39
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 245, 240, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0] </td>
40
+ </tr>
41
+</tbody>
42
+</table>
... ...
\ No newline at end of file