ce3be4d3b5bca0b4f83aac11fd57f4528f5c0fe0
BL_genes.md
| ... | ... | @@ -11,121 +11,121 @@ link-citations: true |
| 11 | 11 | |
| 12 | 12 | ## Tier 1, high-confidence BL genes |
| 13 | 13 | |
| 14 | -### *28 total* |
|
| 14 | +### *32 total* |
|
| 15 | 15 | |
| 16 | 16 | |Gene|Summary| First BL study | Other entities | QC result | |
| 17 | 17 | |:-:|:--:|:-:|:-|:-| |
| 18 | -|[ARID1A](ARID1A)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@barisicARID1AOrchestratesSWI2024], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 18 | +|[ARID1A](ARID1A)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@barisicARID1AOrchestratesSWI2024]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@krysiakRecurrentSomaticMutations2017; @rossiCodingGenomeSplenic2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 19 | 19 | |[BACH2](BACH2)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
| 20 | -|[BCL7A](BCL7A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017b; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 20 | +|[BCL6](BCL6)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@masclePointMutationsBCL62003], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 21 | +|[BCL7A](BCL7A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|| |
|
| 21 | 22 | |[BMP7](BMP7)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
| 22 | -|[CCND3](CCND3)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@schmitzBurkittLymphomaPathogenesis2012], aSHM|[Richter et al](papers/richterRecurrentMutationID32012a)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011]|| |
|
| 23 | +|[CCND3](CCND3)|Tier 1 GE[@richterRecurrentMutationID32012], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Richter et al](papers/richterRecurrentMutationID32012)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011]|| |
|
| 23 | 24 | |[CHD8](CHD8)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
| 24 | -|[DDX3X](DDX3X)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@gongSequentialInverseDysregulation2021], CE[@kizhakeyilDDX3XLossAdverse2021], aSHM|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|| |
|
| 25 | -|[FBXO11](FBXO11)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@schneiderFBXO11InactivationLeads2016b], aSHM|[Richter et al](papers/richterRecurrentMutationID32012a)|[@hubschmannMutationalMechanismsShaping2021b; @parryWholeExomeSequencing2013]|| |
|
| 26 | -|[FOXO1](FOXO1)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@trinhAnalysisFOXO1Mutations], CE[@trinhAnalysisFOXO1Mutations], aSHM|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|| |
|
| 27 | -|[GNA13](GNA13)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@muppidiLossSignalingGa132014b], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 28 | -|[GNAI2](GNAI2)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 29 | -|[HNRNPU](HNRNPU)|Tier 1 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 30 | -|[ID3](ID3)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@richterRecurrentMutationID32012a], aSHM|[Richter et al](papers/richterRecurrentMutationID32012a)|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|| |
|
| 31 | -|[KMT2D](KMT2D)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@liLossCREBBPKMT2D2024], CE[@rushtonGeneticEvolutionaryPatterns2020], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|| |
|
| 32 | -|[MYC](MYC)|Tier 1 GE[@johnstonCmycHypermutationBurkitt1992], FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008], aSHM|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 33 | -|[P2RY8](P2RY8)|Tier 1 GE[@muppidiLossSignalingGa132014b], FE[@muppidiLossSignalingGa132014b], aSHM|[Muppidi et al](papers/muppidiLossSignalingGa132014b)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 34 | -|[PHF6](PHF6)|Tier 1 GE[@thomasGeneticSubgroupsInform2023], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 35 | -|[PTEN](PTEN)|Tier 1 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 36 | -|[RFX7](RFX7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 37 | -|[RHOA](RHOA)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@ohayreInactivatingMutationsGNA132016], aSHM|[Richter et al](papers/richterRecurrentMutationID32012a)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 38 | -|[SIN3A](SIN3A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@chapuyMolecularSubtypesDiffuse2018b; @rossiCodingGenomeSplenic2012c]|| |
|
| 39 | -|[SMARCA4](SMARCA4)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@dengSMARCA4HaploinsufficientCell2024], aSHM|[Richter et al](papers/richterRecurrentMutationID32012a)|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017]|| |
|
| 40 | -|[TCF3](TCF3)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 25 | +|[CREBBP](CREBBP)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@dunsCharacterizationDLBCLPMBL2021; @parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011]|PASS| |
|
| 26 | +|[DDX3X](DDX3X)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@gongSequentialInverseDysregulation2021]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@mottokIntegrativeGenomicAnalysis2019; @reddyGeneticFunctionalDrivers2017]|| |
|
| 27 | +|[FBXO11](FBXO11)|Tier 1 GE[@richterRecurrentMutationID32012], FE[@duanFBXO11TargetsBCL62011]|[Richter et al](papers/richterRecurrentMutationID32012)|[@arthurGenomewideDiscoverySomatic2018; @parryWholeExomeSequencing2013]|| |
|
| 28 | +|[FOXO1](FOXO1)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@trinhAnalysisFOXO1Mutations]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011]|| |
|
| 29 | +|[GNA13](GNA13)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@muppidiLossSignalingGa132014]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|| |
|
| 30 | +|[GNAI2](GNAI2)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@muppidiLossSignalingGa132014]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@drevalGeneticSubdivisionsFollicular2023; @morinMutationalStructuralAnalysis2013]|| |
|
| 31 | +|[HIST1H1E](HIST1H1E)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017; @lohrDiscoveryPrioritizationSomatic2012; @reichelFlowSortingExome2015]|| |
|
| 32 | +|[HNRNPU](HNRNPU)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 33 | +|[ID3](ID3)|Tier 1 GE[@richterRecurrentMutationID32012]|[Richter et al](papers/richterRecurrentMutationID32012)|[@schmitzGeneticsPathogenesisDiffuse2018; @spinaGeneticsNodalMarginal2016]|| |
|
| 34 | +|[KMT2D](KMT2D)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@zhangDisruptionKMT2DPerturbs2015]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012]|| |
|
| 35 | +|[MYC](MYC)|Tier 1 GE[@johnstonCmycHypermutationBurkitt1992], FE[@freieGermlinePointMutation2024], aSHM|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)|[@dunsCharacterizationDLBCLPMBL2021; @jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
|
| 36 | +|[P2RY8](P2RY8)|Tier 1 GE[@muppidiLossSignalingGa132014], FE[@muppidiLossSignalingGa132014]|[Muppidi et al](papers/muppidiLossSignalingGa132014)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 37 | +|[PCBP1](PCBP1)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 38 | +|[PHF6](PHF6)|Tier 1 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 39 | +|[PTEN](PTEN)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@pfeiferPTENLossDefines2013]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 40 | +|[RFX7](RFX7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@weberPiggyBacTransposonTools2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 41 | +|[RHOA](RHOA)|Tier 1 GE[@richterRecurrentMutationID32012], FE[@ohayreInactivatingMutationsGNA132016]|[Richter et al](papers/richterRecurrentMutationID32012)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 42 | +|[SIN3A](SIN3A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@chapuyMolecularSubtypesDiffuse2018; @rossiCodingGenomeSplenic2012]|| |
|
| 43 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@richterRecurrentMutationID32012], FE[@fernandoFunctionalCharacterizationSMARCA42020]|[Richter et al](papers/richterRecurrentMutationID32012)|[@krysiakRecurrentSomaticMutations2017; @nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017]|| |
|
| 44 | +|[TCF3](TCF3)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 41 | 45 | |[TCL1A](TCL1A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@reddyGeneticFunctionalDrivers2017]|| |
| 42 | -|[TFAP4](TFAP4)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@toncUnexpectedSuppressionTumorigenesis2021]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 43 | -|[TP53](TP53)|Tier 1 GE[@wildaInactivationARFMDM2p53Pathway2004], FE[@rowhTp53DeletionLineage2011], aSHM|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 44 | -|[USP7](USP7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 45 | -|[WNK1](WNK1)|Tier 1 GE[@thomasGeneticSubgroupsInform2023], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]|| |
|
| 46 | +|[TFAP4](TFAP4)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 47 | +|[TP53](TP53)|Tier 1 GE[@wildaInactivationARFMDM2p53Pathway2004], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012; @tiacciPervasiveMutationsJAKSTAT2018]|| |
|
| 48 | +|[USP7](USP7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 49 | +|[WNK1](WNK1)|Tier 1 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@hubschmannMutationalMechanismsShaping2021; @jalladesExomeSequencingIdentifies2017]|| |
|
| 46 | 50 | |
| 47 | 51 | ## Tier 2, low-confidence BL genes |
| 48 | 52 | |
| 49 | -### *76 total* |
|
| 53 | +### *72 total* |
|
| 50 | 54 | |
| 51 | 55 | |Gene|Summary| First BL study | Other entities | QC result | |
| 52 | 56 | |:-:|:--:|:-:|:-|:-| |
| 53 | -|[ADAMTS5](ADAMTS5)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 54 | -|[ADNP](ADNP)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 55 | -|[AGO4](AGO4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 57 | +|[ADAMTS5](ADAMTS5)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 58 | +|[ADNP](ADNP)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 59 | +|[AGO4](AGO4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 56 | 60 | |[ARHGEF1](ARHGEF1)|Tier 2 GE[@muppidiLossSignalingGa132014b]|[Muppidi et al](papers/muppidiLossSignalingGa132014b)||| |
| 57 | -|[BCL2](BCL2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 58 | -|[BCL6](BCL6)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 59 | -|[BTG1](BTG1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], FE[@mlynarczykBTG1MutationYields2023b], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 61 | +|[BCL2](BCL2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 62 | +|[BTG1](BTG1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022], FE[@almasmoumFrequentLossBTG12021], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]|| |
|
| 60 | 63 | |[C16orf48](C16orf48)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 61 | 64 | |[CARD4](CARD4)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
| 62 | -|[CCNF](CCNF)|Tier 2 GE[@abateDistinctViralMutational2015a], aSHM|[Abate et al](papers/abateDistinctViralMutational2015a)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 63 | -|[CD79A](CD79A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 64 | -|[CD83](CD83)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b]|PASS| |
|
| 65 | -|[CDC73](CDC73)|Tier 2 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 66 | -|[CDKN2A](CDKN2A)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], CE[@jardinDiffuseLargeBcell2010a], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|| |
|
| 65 | +|[CCNF](CCNF)|Tier 2 GE[@abateDistinctViralMutational2015]|[Abate et al](papers/abateDistinctViralMutational2015)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 66 | +|[CD79A](CD79A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)|[@rossiCodingGenomeSplenic2012]|| |
|
| 67 | +|[CD83](CD83)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021; @morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023]|PASS| |
|
| 68 | +|[CDC73](CDC73)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 69 | +|[CDKN2A](CDKN2A)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016]|| |
|
| 67 | 70 | |[CDKN2C](CDKN2C)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)||| |
| 68 | -|[CHD4](CHD4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 69 | -|[CPXM2](CPXM2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 70 | -|[CREBBP](CREBBP)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|PASS| |
|
| 71 | -|[CXCR4](CXCR4)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]|PASS| |
|
| 71 | +|[CHD4](CHD4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 72 | +|[CPXM2](CPXM2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 73 | +|[CXCR4](CXCR4)|Tier 2 GE[@paneaWholeGenomeLandscape2019], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017]|PASS| |
|
| 72 | 74 | |[DHCR7](DHCR7)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 73 | -|[E2F2](E2F2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 74 | -|[EBF1](EBF1)|Tier 2 GE[@thomasGeneticSubgroupsInform2023], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]|| |
|
| 75 | -|[EDNRB](EDNRB)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 75 | +|[E2F2](E2F2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 76 | +|[EBF1](EBF1)|Tier 2 GE[@thomasGeneticSubgroupsInform2023], FE[@ramirez-komoSpontaneousLossLineage2017], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@bohleRoleEarlyBcell2013; @drevalGeneticSubdivisionsFollicular2023; @reichelFlowSortingExome2015]|| |
|
| 77 | +|[EDNRB](EDNRB)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 76 | 78 | |[EHD1](EHD1)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)||| |
| 77 | 79 | |[EIF4A1](EIF4A1)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
| 78 | 80 | |[ELP2](ELP2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 79 | 81 | |[EPPK1](EPPK1)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
| 80 | -|[ERAP1](ERAP1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 82 | +|[ERAP1](ERAP1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 81 | 83 | |[EXOSC6](EXOSC6)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 82 | -|[EZH2](EZH2)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@yapSomaticMutationsEZH22011b], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 84 | +|[EZH2](EZH2)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@sneeringerCoordinatedActivitiesWildtype2010]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]|PASS| |
|
| 83 | 85 | |[FLYWCH1](FLYWCH1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 84 | 86 | |[GGTLA4](GGTLA4)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
| 85 | 87 | |[GTSE1](GTSE1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 86 | -|[HIST1H1E](HIST1H1E)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
|
| 87 | 88 | |[HIST1H3D](HIST1H3D)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
| 88 | -|[HIST1H3I](HIST1H3I)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017b]|PASS| |
|
| 89 | -|[HIST1H4J](HIST1H4J)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 90 | -|[HLA-DQB1](HLA-DQB1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 91 | -|[IGLL5](IGLL5)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]|PASS| |
|
| 92 | -|[IKZF3](IKZF3)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 93 | -|[IRF8](IRF8)|Tier 2 GE[@paneaWholeGenomeLandscape2019], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 89 | +|[HIST1H3I](HIST1H3I)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017]|PASS| |
|
| 90 | +|[HIST1H4J](HIST1H4J)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@mottokIntegrativeGenomicAnalysis2019]|PASS| |
|
| 91 | +|[HLA-DQB1](HLA-DQB1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 92 | +|[IGLL5](IGLL5)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023]|PASS| |
|
| 93 | +|[IKZF3](IKZF3)|Tier 2 GE[@paneaWholeGenomeLandscape2019], FE[@lazarianHotspotMutationTranscription2021]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 94 | +|[IRF8](IRF8)|Tier 2 GE[@paneaWholeGenomeLandscape2019], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019]|PASS| |
|
| 94 | 95 | |[KANK2](KANK2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 95 | -|[KLHL26](KLHL26)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 96 | -|[KMT2C](KMT2C)|Tier 2 GE[@zhouSporadicEndemicBurkitt2019], aSHM|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|| |
|
| 97 | -|[MCL1](MCL1)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 98 | -|[MIR142](MIR142)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@kwanhianMicroRNA142Mutated202012b]|| |
|
| 99 | -|[MKI67](MKI67)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 96 | +|[KLHL26](KLHL26)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 97 | +|[KMT2C](KMT2C)|Tier 2 GE[@zhouSporadicEndemicBurkitt2019]|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)|[@sarkozyMutationalLandscapeGray2021; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|| |
|
| 98 | +|[MCL1](MCL1)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021; @reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 99 | +|[MIR142](MIR142)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], FE[@trissalMIR142LossofFunctionMutations2018], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@kwanhianMicroRNA142Mutated202012]|| |
|
| 100 | +|[MKI67](MKI67)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@russler-germainMutationsAssociatedProgression2023]|| |
|
| 100 | 101 | |[MYO18A](MYO18A)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 101 | 102 | |[NBEAL1](NBEAL1)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
| 102 | -|[NCOR2](NCOR2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012], aSHM|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]|| |
|
| 103 | +|[NCOR2](NCOR2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@sarkozyMutationalLandscapeGray2021; @spinaGeneticsNodalMarginal2016]|| |
|
| 103 | 104 | |[NOA1](NOA1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
| 104 | 105 | |[P2RY2](P2RY2)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
| 105 | -|[PCBP1](PCBP1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012], aSHM|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 106 | 106 | |[PDCD11](PDCD11)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 107 | -|[PIM1](PIM1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], CE[@guoSGK1MutationStatus2022b], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 108 | -|[PLCG2](PLCG2)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@fanComprehensiveCharacterizationDriver2020b]|PASS| |
|
| 109 | -|[PPP6R2](PPP6R2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 110 | -|[PREX1](PREX1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 107 | +|[PIM1](PIM1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022], FE[@kuoRolePIM1Ibrutinibresistant2016], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)|[@drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
|
| 108 | +|[PLCG2](PLCG2)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@fanComprehensiveCharacterizationDriver2020]|PASS| |
|
| 109 | +|[PPP6R2](PPP6R2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 110 | +|[PREX1](PREX1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 111 | 111 | |[RANBP6](RANBP6)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
| 112 | -|[REV3L](REV3L)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 112 | +|[REV3L](REV3L)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 113 | 113 | |[RNF144B](RNF144B)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
| 114 | -|[RPL10](RPL10)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 115 | -|[S1PR2](S1PR2)|Tier 2 GE[@muppidiLossSignalingGa132014b], FE[@floriHematopoieticOncoproteinFOXP12016], aSHM|[Muppidi et al](papers/muppidiLossSignalingGa132014b)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|| |
|
| 116 | -|[SAL3](SAL3)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 117 | -|[TET2](TET2)|Tier 2 GE[@thomasGeneticSubgroupsInform2023], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 114 | +|[RPL10](RPL10)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 115 | +|[S1PR2](S1PR2)|Tier 2 GE[@muppidiLossSignalingGa132014], FE[@muppidiLossSignalingGa132014], aSHM|[Muppidi et al](papers/muppidiLossSignalingGa132014)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|| |
|
| 116 | +|[SAL3](SAL3)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 117 | +|[TET2](TET2)|Tier 2 GE[@thomasGeneticSubgroupsInform2023], FE[@asmarGenomewideProfilingIdentifies2013]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@albuquerqueEnhancingKnowledgeDiscovery2017]|| |
|
| 118 | 118 | |[TOP2A](TOP2A)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 119 | -|[TTN](TTN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 120 | -|[VWA7](VWA7)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 119 | +|[TTN](TTN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 120 | +|[VWA7](VWA7)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 121 | 121 | |[WDR90](WDR90)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 122 | 122 | |[WHAMM](WHAMM)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 123 | 123 | |[WNK2](WNK2)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
| 124 | 124 | |[YY1AP1](YY1AP1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
| 125 | -|[ZAN](ZAN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 126 | -|[ZBTB7A](ZBTB7A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], aSHM|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 127 | -|[ZFP36L1](ZFP36L1)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|PASS| |
|
| 128 | -|[ZNF85](ZNF85)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 125 | +|[ZAN](ZAN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 126 | +|[ZBTB7A](ZBTB7A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 127 | +|[ZFP36L1](ZFP36L1)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|PASS| |
|
| 128 | +|[ZNF85](ZNF85)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022)||| |
|
| 129 | 129 | |
| 130 | 130 | ## Tier 3, retired BL genes |
| 131 | 131 | |
| ... | ... | @@ -134,24 +134,24 @@ link-citations: true |
| 134 | 134 | |Gene|Summary| First BL study | Other entities | QC result | |
| 135 | 135 | |:-:|:--:|:-:|:-|:-| |
| 136 | 136 | |[ACAD9](ACAD9)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 137 | -|[ACE](ACE)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 137 | +|[ACE](ACE)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 138 | 138 | |[ALPK2](ALPK2)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 139 | 139 | |[ATP2C2](ATP2C2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 140 | -|[BRAF](BRAF)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciBRAFMutationsHairycell2011a]|FAIL| |
|
| 141 | -|[BRD4](BRD4)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 142 | -|[BTG2](BTG2)|Tier 3 GE[@loveGeneticLandscapeMutations2012], CE[@guoMutationBTG2Gene2022b], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 140 | +|[BRAF](BRAF)|Tier 3 GE[@loveGeneticLandscapeMutations2012], FE[@wanMechanismActivationRAFERK2004]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciBRAFMutationsHairycell2011]|FAIL| |
|
| 141 | +|[BRD4](BRD4)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 142 | +|[BTG2](BTG2)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 143 | 143 | |[C6orf27](C6orf27)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 144 | -|[CAD](CAD)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 144 | +|[CAD](CAD)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 145 | 145 | |[CCT6B](CCT6B)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 146 | -|[CD79B](CD79B)|Tier 3 GE[@paneaWholeGenomeLandscape2019], FE[@davisChronicActiveBcellreceptor2010], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 146 | +|[CD79B](CD79B)|Tier 3 GE[@paneaWholeGenomeLandscape2019], FE[@davisChronicActiveBcellreceptor2010]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@davisChronicActiveBcellreceptor2010; @drevalGeneticSubdivisionsFollicular2023]|FAIL| |
|
| 147 | 147 | |[CDH17](CDH17)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 148 | 148 | |[COL4A2](COL4A2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 149 | 149 | |[CTCF](CTCF)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 150 | 150 | |[CYB5D1](CYB5D1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 151 | 151 | |[CYP4F22](CYP4F22)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 152 | -|[DLGAP1](DLGAP1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 152 | +|[DLGAP1](DLGAP1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 153 | 153 | |[DNMT1](DNMT1)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 154 | -|[DTX1](DTX1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], FE[@demirandaExomeSequencingReveals2014], CE[@merirantaDeltex1MutationsPredict2017b], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 154 | +|[DTX1](DTX1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 155 | 155 | |[EIF2C4](EIF2C4)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 156 | 156 | |[EML2](EML2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 157 | 157 | |[ENTPD3](ENTPD3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| ... | ... | @@ -163,37 +163,37 @@ link-citations: true |
| 163 | 163 | |[FZD3](FZD3)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 164 | 164 | |[GRIK5](GRIK5)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 165 | 165 | |[HIST1H1C](HIST1H1C)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|FAIL| |
| 166 | -|[HIST1H2AG](HIST1H2AG)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c]|FAIL| |
|
| 167 | -|[HIST1H2AM](HIST1H2AM)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]|FAIL| |
|
| 168 | -|[HIST1H2BK](HIST1H2BK)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 166 | +|[HIST1H2AG](HIST1H2AG)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012]|FAIL| |
|
| 167 | +|[HIST1H2AM](HIST1H2AM)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018; @krysiakRecurrentSomaticMutations2017]|FAIL| |
|
| 168 | +|[HIST1H2BK](HIST1H2BK)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@rossiCodingGenomeSplenic2012; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 169 | 169 | |[HIST1H3H](HIST1H3H)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 170 | 170 | |[HIST1H3J](HIST1H3J)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 171 | 171 | |[ICK](ICK)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 172 | -|[ITPR3](ITPR3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciPervasiveMutationsJAKSTAT2018b]|FAIL| |
|
| 172 | +|[ITPR3](ITPR3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciPervasiveMutationsJAKSTAT2018]|FAIL| |
|
| 173 | 173 | |[KCNK10](KCNK10)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 174 | 174 | |[KIFC3](KIFC3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 175 | 175 | |[MAP3K6](MAP3K6)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 176 | 176 | |[MME](MME)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 177 | -|[MTOR](MTOR)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 177 | +|[MTOR](MTOR)|Tier 3 GE[@paneaWholeGenomeLandscape2019], FE[@grabinerDiverseArrayCancerassociated2014]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 178 | 178 | |[MYH10](MYH10)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 179 | -|[NOTCH1](NOTCH1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], CE[@kridelWholeTranscriptomeSequencing2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]|FAIL| |
|
| 180 | -|[NRXN2](NRXN2)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 179 | +|[NOTCH1](NOTCH1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], FE[@ryanCellRegulomeLinks2017]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012]|FAIL| |
|
| 180 | +|[NRXN2](NRXN2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 181 | 181 | |[PABPC4L](PABPC4L)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 182 | 182 | |[PC](PC)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 183 | 183 | |[PCDHA11](PCDHA11)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 184 | -|[PDZRN3](PDZRN3)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 185 | -|[PIK3R1](PIK3R1)|Tier 3 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 184 | +|[PDZRN3](PDZRN3)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 185 | +|[PIK3R1](PIK3R1)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 186 | 186 | |[POLRMT](POLRMT)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 187 | 187 | |[POR](POR)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 188 | 188 | |[PRSS22](PRSS22)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 189 | 189 | |[PTPRN](PTPRN)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 190 | 190 | |[PXDNL](PXDNL)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
| 191 | -|[RBP3](RBP3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 192 | -|[RET](RET)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@fanComprehensiveCharacterizationDriver2020b]|FAIL| |
|
| 191 | +|[RBP3](RBP3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@lohrDiscoveryPrioritizationSomatic2012]|FAIL| |
|
| 192 | +|[RET](RET)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@fanComprehensiveCharacterizationDriver2020]|FAIL| |
|
| 193 | 193 | |[SALL3](SALL3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGenomicLandscapeMantle2014]|FAIL| |
| 194 | 194 | |[SAPS2](SAPS2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 195 | 195 | |[SBF1](SBF1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 196 | -|[SF3B1](SF3B1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], aSHM|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|FAIL| |
|
| 196 | +|[SF3B1](SF3B1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], FE[@cazzolaBiologicClinicalSignificance2013]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|FAIL| |
|
| 197 | 197 | |[SHANK1](SHANK1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 198 | 198 | |[SLC29A2](SLC29A2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
| 199 | 199 | |[SNTB2](SNTB2)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
FL_genes.md
| ... | ... | @@ -15,60 +15,60 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Summary| First FL study | Other entities | QC result | |
| 17 | 17 | |:-:|:--:|:-:|:-|:-| |
| 18 | -|[ACTB](ACTB)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 19 | -|[ARID1A](ARID1A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@barisicARID1AOrchestratesSWI2024], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 20 | -|[ATP6AP1](ATP6AP1)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
|
| 21 | -|[ATP6V1B2](ATP6V1B2)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
|
| 22 | -|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
|
| 23 | -|[BCL10](BCL10)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023b], FE[@xiaBCL10MutationsDefine2022], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
|
| 24 | -|[BCL2](BCL2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 25 | -|[BCL6](BCL6)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 26 | -|[BCL7A](BCL7A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 27 | -|[BTK](BTK)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 28 | -|[CARD11](CARD11)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lenzOncogenicCARD11Mutations2008], CE[@zhaoExpressionPrognosticValue2016], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
|
| 29 | -|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|| |
|
| 30 | -|[CD83](CD83)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
|
| 31 | -|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], aSHM|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 32 | -|[CTSS](CTSS)|Tier 1 GE[@barariaCathepsinAlterationsInduce2020c]|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020c)||| |
|
| 33 | -|[EBF1](EBF1)|Tier 1 GE, aSHM||[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|| |
|
| 34 | -|[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b], CE[@gongExpressionClinicalValue2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@reichelFlowSortingExome2015a]|| |
|
| 35 | -|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], aSHM|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 36 | -|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010a], FE[@yapSomaticMutationsEZH22011b], aSHM|[Morin et al](papers/morinSomaticMutationsAltering2010a)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 37 | -|[FAS](FAS)|Tier 1 GE, FE[@seebergerLossFasCD952001], aSHM||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|| |
|
| 38 | -|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations], CE[@trinhAnalysisFOXO1Mutations], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 39 | -|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
|
| 40 | -|[GNAI2](GNAI2)|Tier 1 GE, aSHM||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
|
| 41 | -|[HIST1H1B](HIST1H1B)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 18 | +|[ACTB](ACTB)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 19 | +|[ARID1A](ARID1A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@barisicARID1AOrchestratesSWI2024]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 20 | +|[ATP6AP1](ATP6AP1)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)||| |
|
| 21 | +|[ATP6V1B2](ATP6V1B2)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)||| |
|
| 22 | +|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015]|| |
|
| 23 | +|[BCL10](BCL10)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023], FE[@xiaBCL10MutationsDefine2022]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016]|| |
|
| 24 | +|[BCL2](BCL2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022; @sarkozyMutationalLandscapeGray2021; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 25 | +|[BCL6](BCL6)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@masclePointMutationsBCL62003], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 26 | +|[BCL7A](BCL7A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|| |
|
| 27 | +|[BTK](BTK)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@huFollicularLymphomaassociatedBTK2021]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@albuquerqueEnhancingKnowledgeDiscovery2017]|| |
|
| 28 | +|[CARD11](CARD11)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lenzOncogenicCARD11Mutations2008]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012]|| |
|
| 29 | +|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012]|| |
|
| 30 | +|[CD83](CD83)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@dunsCharacterizationDLBCLPMBL2021; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
|
| 31 | +|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 32 | +|[CTSS](CTSS)|Tier 1 GE[@barariaCathepsinAlterationsInduce2020]|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020)||| |
|
| 33 | +|[EBF1](EBF1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ramirez-komoSpontaneousLossLineage2017], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015; @thomasGeneticSubgroupsInform2023]|| |
|
| 34 | +|[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@chapuyMolecularSubtypesDiffuse2018; @reichelFlowSortingExome2015]|| |
|
| 35 | +|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@rossiCodingGenomeSplenic2012]|| |
|
| 36 | +|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010], FE[@sneeringerCoordinatedActivitiesWildtype2010]|[Morin et al](papers/morinSomaticMutationsAltering2010)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019]|| |
|
| 37 | +|[FAS](FAS)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@wangFasFADDDeathDomain2010]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016]|| |
|
| 38 | +|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 39 | +|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015]|| |
|
| 40 | +|[GNAI2](GNAI2)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
|
| 41 | +|[HIST1H1B](HIST1H1B)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018; @sarkozyMutationalLandscapeGray2021]|| |
|
| 42 | 42 | |[HIST1H1C](HIST1H1C)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 43 | -|[HIST1H1D](HIST1H1D)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|| |
|
| 44 | -|[HIST1H1E](HIST1H1E)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
|
| 45 | -|[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 46 | -|[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|| |
|
| 47 | -|[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|| |
|
| 48 | -|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 49 | -|[HIST1H2BG](HIST1H2BG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
|
| 50 | -|[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 51 | -|[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 52 | -|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|| |
|
| 53 | -|[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@merirantaDisruptionKLHL6Fuels2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]|| |
|
| 54 | -|[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@liLossCREBBPKMT2D2024], CE[@rushtonGeneticEvolutionaryPatterns2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
|
| 55 | -|[MAP2K1](MAP2K1)|Tier 1 GE[@louissaintPediatrictypeNodalFollicular2016a], aSHM|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016a)|[@shinBRAFV600EMAP2K12015]|| |
|
| 56 | -|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@yingMEF2BMutationsLead], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 57 | -|[MYC](MYC)|Tier 1 GE, FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008], aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 58 | -|[PIM1](PIM1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoSGK1MutationStatus2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 59 | -|[POU2AF1](POU2AF1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 60 | -|[POU2F2](POU2F2)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@hodsonRegulationNormalBcell2016a], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 61 | -|[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a], FE[@ortega-molinaOncogenicRagGTPase2019b], aSHM|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
|
| 62 | -|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@hartmannHighlyRecurrentMutations2016b], CE[@guoSGK1MutationStatus2022b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 63 | -|[SMARCA4](SMARCA4)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@dengSMARCA4HaploinsufficientCell2024], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012a]|| |
|
| 64 | -|[SOCS1](SOCS1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@melznerBiallelicMutationSOCS12005a], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|| |
|
| 65 | -|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@yildizActivatingSTAT6Mutations2015c], aSHM|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a]|| |
|
| 66 | -|[TBL1XR1](TBL1XR1)|Tier 1 GE, FE[@venturuttiTBL1XR1MutationsDrive2020b], aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]|| |
|
| 67 | -|[TMSB4X](TMSB4X)|Tier 1 GE, aSHM||[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 68 | -|[TNFAIP3](TNFAIP3)|Tier 1 GE, FE[@compagnoMutationsMultipleGenes2009a], aSHM||[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|| |
|
| 69 | -|[TNFRSF14](TNFRSF14)|Tier 1 GE[@cheungAcquiredTNFRSF14Mutations2010a], CE[@guoSGK1MutationStatus2022b], aSHM|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
|
| 70 | -|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@rowhTp53DeletionLineage2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 71 | -|[VMA21](VMA21)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 43 | +|[HIST1H1D](HIST1H1D)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|| |
|
| 44 | +|[HIST1H1E](HIST1H1E)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012; @reichelFlowSortingExome2015]|| |
|
| 45 | +|[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 46 | +|[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012]|| |
|
| 47 | +|[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018; @paneaWholeGenomeLandscape2019]|| |
|
| 48 | +|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@lohrDiscoveryPrioritizationSomatic2012; @mottokIntegrativeGenomicAnalysis2019]|| |
|
| 49 | +|[HIST1H2BG](HIST1H2BG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)||| |
|
| 50 | +|[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018]|| |
|
| 51 | +|[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019]|| |
|
| 52 | +|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019; @paneaWholeGenomeLandscape2019]|| |
|
| 53 | +|[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@choiLossKLHL6Promotes2018], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]|| |
|
| 54 | +|[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@zhangDisruptionKMT2DPerturbs2015]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012]|| |
|
| 55 | +|[MAP2K1](MAP2K1)|Tier 1 GE[@louissaintPediatrictypeNodalFollicular2016]|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016)|[@shinBRAFV600EMAP2K12015]|| |
|
| 56 | +|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@ponMEF2BMutationsNonHodgkin2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 57 | +|[MYC](MYC)|Tier 1 GE, FE[@freieGermlinePointMutation2024], aSHM||[@dunsCharacterizationDLBCLPMBL2021; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
|
| 58 | +|[PIM1](PIM1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@kuoRolePIM1Ibrutinibresistant2016], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022; @dunsCharacterizationDLBCLPMBL2021; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
|
| 59 | +|[POU2AF1](POU2AF1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@gonzalez-rinconUnravelingTransformationFollicular2019], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018]|| |
|
| 60 | +|[POU2F2](POU2F2)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@hodsonRegulationNormalBcell2016]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 61 | +|[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016], FE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)||| |
|
| 62 | +|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@gaoSGK1MutationsDLBCL2021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021]|| |
|
| 63 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@fernandoFunctionalCharacterizationSMARCA42020]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012]|| |
|
| 64 | +|[SOCS1](SOCS1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@melznerBiallelicMutationSOCS12005], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]|| |
|
| 65 | +|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015], FE[@mentzPARP14NovelTarget2022]|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015)|[@ritzRecurrentMutationsSTAT62009]|| |
|
| 66 | +|[TBL1XR1](TBL1XR1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@venturuttiTBL1XR1MutationsDrive2020]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @rossiCodingGenomeSplenic2012]|| |
|
| 67 | +|[TMSB4X](TMSB4X)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 68 | +|[TNFAIP3](TNFAIP3)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@compagnoMutationsMultipleGenes2009]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@compagnoMutationsMultipleGenes2009; @rossiAlterationBIRC3Multiple2011; @schmitzTNFAIP3A20Tumor2009]|| |
|
| 69 | +|[TNFRSF14](TNFRSF14)|Tier 1 GE[@cheungAcquiredTNFRSF14Mutations2010], FE[@]|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016]|| |
|
| 70 | +|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 71 | +|[VMA21](VMA21)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 72 | 72 | |
| 73 | 73 | ## Tier 2, low-confidence FL genes |
| 74 | 74 | |
| ... | ... | @@ -76,65 +76,65 @@ link-citations: true |
| 76 | 76 | |
| 77 | 77 | |Gene|Summary| First FL study | Other entities | QC result | |
| 78 | 78 | |:-:|:--:|:-:|:-|:-| |
| 79 | -|[ABL2](ABL2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 80 | -|[ACTG1](ACTG1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|| |
|
| 81 | -|[ATP6V1A](ATP6V1A)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 82 | -|[BIRC6](BIRC6)|Tier 2 GE, aSHM||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 83 | -|[BTG1](BTG1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@mlynarczykBTG1MutationYields2023b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 84 | -|[BTG2](BTG2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoMutationBTG2Gene2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 85 | -|[CD70](CD70)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 86 | -|[CD79B](CD79B)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@davisChronicActiveBcellreceptor2010], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|| |
|
| 87 | -|[CDC42BPB](CDC42BPB)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 88 | -|[CILP](CILP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 89 | -|[CPNE8](CPNE8)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 90 | -|[CXCR4](CXCR4)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]|| |
|
| 91 | -|[CYP2A6](CYP2A6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 92 | -|[DDX3X](DDX3X)|Tier 2 GE, FE[@gongSequentialInverseDysregulation2021], CE[@kizhakeyilDDX3XLossAdverse2021], aSHM||[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 93 | -|[DHX15](DHX15)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 94 | -|[DTX1](DTX1)|Tier 2 GE, FE[@demirandaExomeSequencingReveals2014], CE[@merirantaDeltex1MutationsPredict2017b], aSHM||[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 95 | -|[DUSP2](DUSP2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 96 | -|[EGR1](EGR1)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]|| |
|
| 97 | -|[FZR1](FZR1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 98 | -|[GBP7](GBP7)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 99 | -|[GRM6](GRM6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 100 | -|[HIST1H2BD](HIST1H2BD)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
|
| 101 | -|[HIST1H2BM](HIST1H2BM)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
|
| 102 | -|[HIST1H3B](HIST1H3B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
|
| 103 | -|[HIST1H3G](HIST1H3G)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
|
| 104 | -|[HIST1H3I](HIST1H3I)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@paneaWholeGenomeLandscape2019]|| |
|
| 105 | -|[HLA-B](HLA-B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 106 | -|[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|| |
|
| 107 | -|[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 108 | -|[JUP](JUP)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 109 | -|[KIR3DL1](KIR3DL1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 79 | +|[ABL2](ABL2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 80 | +|[ACTG1](ACTG1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@deschGenotypingCirculatingTumor2020; @fanComprehensiveCharacterizationDriver2020; @spinaGeneticsNodalMarginal2016]|| |
|
| 81 | +|[ATP6V1A](ATP6V1A)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 82 | +|[BIRC6](BIRC6)|Tier 2 GE||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021]|| |
|
| 83 | +|[BTG1](BTG1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@almasmoumFrequentLossBTG12021], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]|| |
|
| 84 | +|[BTG2](BTG2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 85 | +|[CD70](CD70)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], FE[@nieDualRoleCD702022]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 86 | +|[CD79B](CD79B)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@davisChronicActiveBcellreceptor2010]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@davisChronicActiveBcellreceptor2010; @paneaWholeGenomeLandscape2019]|| |
|
| 87 | +|[CDC42BPB](CDC42BPB)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@spinaGeneticsNodalMarginal2016]|| |
|
| 88 | +|[CILP](CILP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 89 | +|[CPNE8](CPNE8)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 90 | +|[CXCR4](CXCR4)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]|| |
|
| 91 | +|[CYP2A6](CYP2A6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 92 | +|[DDX3X](DDX3X)|Tier 2 GE, FE[@gongSequentialInverseDysregulation2021]||[@mottokIntegrativeGenomicAnalysis2019; @reddyGeneticFunctionalDrivers2017; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 93 | +|[DHX15](DHX15)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 94 | +|[DTX1](DTX1)|Tier 2 GE, aSHM||[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 95 | +|[DUSP2](DUSP2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@dunsCharacterizationDLBCLPMBL2021; @lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 96 | +|[EGR1](EGR1)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@reichelFlowSortingExome2015; @rossiCodingGenomeSplenic2012]|| |
|
| 97 | +|[FZR1](FZR1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 98 | +|[GBP7](GBP7)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 99 | +|[GRM6](GRM6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 100 | +|[HIST1H2BD](HIST1H2BD)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)||| |
|
| 101 | +|[HIST1H2BM](HIST1H2BM)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)||| |
|
| 102 | +|[HIST1H3B](HIST1H3B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012; @reichelFlowSortingExome2015]|| |
|
| 103 | +|[HIST1H3G](HIST1H3G)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)||| |
|
| 104 | +|[HIST1H3I](HIST1H3I)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@paneaWholeGenomeLandscape2019]|| |
|
| 105 | +|[HLA-B](HLA-B)|Tier 2 GE, FE[@fangazioGeneticMechanismsHLAI2021]||[@lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 106 | +|[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@chapuyMolecularSubtypesDiffuse2018; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|| |
|
| 107 | +|[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@tiacciPervasiveMutationsJAKSTAT2018], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015; @schmitzGeneticsPathogenesisDiffuse2018]|| |
|
| 108 | +|[JUP](JUP)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 109 | +|[KIR3DL1](KIR3DL1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 110 | 110 | |[KLF2](KLF2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|| |
| 111 | -|[LAPTM5](LAPTM5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 112 | -|[LTB](LTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|| |
|
| 113 | -|[MAGEC1](MAGEC1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 114 | -|[MAP7D1](MAP7D1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 115 | -|[MEF2C](MEF2C)|Tier 2 GE, FE[@jingjingNovelMEF2CMutation2020], aSHM||[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 116 | -|[MGEA5](MGEA5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 117 | -|[MKI67](MKI67)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 118 | -|[MYCBP2](MYCBP2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 119 | -|[MYD88](MYD88)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ngoOncogenicallyActiveMYD882011a], CE[@guoSGK1MutationStatus2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|| |
|
| 120 | -|[NFKBIA](NFKBIA)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@thomasMutationalAnalysisIkappaBalpha2004; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 121 | -|[OR8H2](OR8H2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 122 | -|[P2RY8](P2RY8)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|| |
|
| 123 | -|[PDS5B](PDS5B)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 124 | -|[PPP4C](PPP4C)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 125 | -|[PRKDC](PRKDC)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 126 | -|[PTPRD](PTPRD)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 127 | -|[PZP](PZP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 128 | -|[RBM6](RBM6)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 129 | -|[S1PR2](S1PR2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@floriHematopoieticOncoproteinFOXP12016], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|| |
|
| 130 | -|[SHROOM3](SHROOM3)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 131 | -|[SRRM2](SRRM2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 132 | -|[STAB2](STAB2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 133 | -|[TMEM30A](TMEM30A)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020b], CE[@ennishiTMEM30ALossoffunctionMutations2020b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 134 | -|[TPP1](TPP1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 135 | -|[XIRP2](XIRP2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
|
| 136 | -|[ZC3H12A](ZC3H12A)|Tier 2 GE, aSHM||[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 137 | -|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 111 | +|[LAPTM5](LAPTM5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 112 | +|[LTB](LTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@chapuyMolecularSubtypesDiffuse2018; @deschGenotypingCirculatingTumor2020]|| |
|
| 113 | +|[MAGEC1](MAGEC1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 114 | +|[MAP7D1](MAP7D1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 115 | +|[MEF2C](MEF2C)|Tier 2 GE, aSHM||[@hubschmannMutationalMechanismsShaping2021]|| |
|
| 116 | +|[MGEA5](MGEA5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 117 | +|[MKI67](MKI67)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 118 | +|[MYCBP2](MYCBP2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 119 | +|[MYD88](MYD88)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ngoOncogenicallyActiveMYD882011]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@ngoOncogenicallyActiveMYD882011; @yanBCRTLRSignaling2012]|| |
|
| 120 | +|[NFKBIA](NFKBIA)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], FE[@jungnickelClonalDeleteriousMutations2000]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@thomasMutationalAnalysisIkappaBalpha2004; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 121 | +|[OR8H2](OR8H2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 122 | +|[P2RY8](P2RY8)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @muppidiLossSignalingGa132014]|| |
|
| 123 | +|[PDS5B](PDS5B)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 124 | +|[PPP4C](PPP4C)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 125 | +|[PRKDC](PRKDC)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@schmitzGeneticsPathogenesisDiffuse2018]|| |
|
| 126 | +|[PTPRD](PTPRD)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@spinaGeneticsNodalMarginal2016]|| |
|
| 127 | +|[PZP](PZP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 128 | +|[RBM6](RBM6)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 129 | +|[S1PR2](S1PR2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014]|| |
|
| 130 | +|[SHROOM3](SHROOM3)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 131 | +|[SRRM2](SRRM2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 132 | +|[STAB2](STAB2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 133 | +|[TMEM30A](TMEM30A)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 134 | +|[TPP1](TPP1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
|
| 135 | +|[XIRP2](XIRP2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)||| |
|
| 136 | +|[ZC3H12A](ZC3H12A)|Tier 2 GE, FE[@skalniakRegulatoryFeedbackLoop2009]||[@chapuyMolecularSubtypesDiffuse2018]|| |
|
| 137 | +|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 138 | 138 | |
| 139 | 139 | ## Tier 3, retired FL genes |
| 140 | 140 |