Changes in d3c90e1: update

				MZL_Tier1.md
			
          @@ -1,44 +0,0 @@

          -|Gene|Status| First MZL study | Other lists | 

          -|:-:|:-:|:-:|:----|

          -|[ACTB](ACTB)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[ARID1A](ARID1A)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[ATM](ATM)|MZL Tier 1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[BCL10](BCL10)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[BCL7A](BCL7A)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[BIRC3](BIRC3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[BRAF](BRAF)|MZL Tier 1||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[BTG1](BTG1)|MZL Tier 1||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[CARD11](CARD11)|MZL Tier 1|[Yan et al](papers/yanBCRTLRSignaling2012)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[CCND3](CCND3)|MZL Tier 1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[CXCR4](CXCR4)|MZL Tier 1||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|

          -|[DTX1](DTX1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[EP300](EP300)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[EZH2](EZH2)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[FAS](FAS)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[FAT1](FAT1)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[FOXO1](FOXO1)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[H1-4](H1-4)|MZL Tier 1|||

          -|[H1-5](H1-5)|MZL Tier 1|||

          -|[ID3](ID3)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

          -|[KLF2](KLF2)|MZL Tier 1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[KLHL6](KLHL6)|MZL Tier 1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[KMT2D](KMT2D)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[MAP3K14](MAP3K14)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[MPEG1](MPEG1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[MYD88](MYD88)|MZL Tier 1|[Yan et al](papers/yanBCRTLRSignaling2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|

          -|[NCOR2](NCOR2)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[NOL9](NOL9)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[NOTCH1](NOTCH1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[NOTCH2](NOTCH2)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[PCLO](PCLO)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[POU2AF1](POU2AF1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[PTPRD](PTPRD)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[SIN3A](SIN3A)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[SOCS1](SOCS1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[SPEN](SPEN)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[STAT6](STAT6)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[TBL1XR1](TBL1XR1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[TNFAIP3](TNFAIP3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[TNFRSF14](TNFRSF14)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[TP53](TP53)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          -|[TRAF3](TRAF3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

				MZL_Tier2.md
			
          @@ -1,76 +0,0 @@

          -|Gene|Status| First MZL study | Other lists | 

          -|:-:|:-:|:-:|:----|

          -|[ABCA13](ABCA13)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[ACTG1](ACTG1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[ADD2](ADD2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[AMN](AMN)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[AMOTL1](AMOTL1)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          -|[AOC2](AOC2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[ARHGAP20](ARHGAP20)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[ARHGEF15](ARHGEF15)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[ARHGEF17](ARHGEF17)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[BCOR](BCOR)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[MCL](MCL_genes#tier-2-mcl-genes)|

          -|[C6orf103](C6orf103)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[CBFA2T3](CBFA2T3)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          -|[CD79A](CD79A)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-2-bl-genes)|

          -|[CD9B](CD9B)|MZL Tier 2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||

          -|[CDC42BPB](CDC42BPB)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[FL](FL_genes#tier-2-fl-genes)|

          -|[CDKN2A](CDKN2A)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[CLGN](CLGN)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[CNBP](CNBP)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[CNKSR2](CNKSR2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[CREBBP](CREBBP)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          -|[DNAH5](DNAH5)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

          -|[DNAH7](DNAH7)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[DNAI1](DNAI1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[DOCK6](DOCK6)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[DSP](DSP)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[DTNB](DTNB)|MZL Tier 2|||

          -|[DTX3L](DTX3L)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[EGR1](EGR1)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[EGR2](EGR2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          -|[EZH1](EZH1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[FAT4](FAT4)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|

          -|[FBXO11](FBXO11)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[GPR98](GPR98)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[GPS2](GPS2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          -|[HIST1H1D](HIST1H1D)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[HIST1H2AD](HIST1H2AD)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[HIST1H2AG](HIST1H2AG)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          -|[HIST1H2BK](HIST1H2BK)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[HIST4H4](HIST4H4)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[HRAS](HRAS)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[IKBKB](IKBKB)|MZL Tier 2|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[KAT6A](KAT6A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[KDM6A](KDM6A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[KIF26A](KIF26A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[LRP1B](LRP1B)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[MCRS1](MCRS1)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          -|[MGA](MGA)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[MSL2](MSL2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          -|[MYC](MYC)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[MYLK](MYLK)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[NCOA6](NCOA6)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[NRAS](NRAS)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[PACRG](PACRG)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[PARK2](PARK2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[PLA2G4D](PLA2G4D)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          -|[PLXNB3](PLXNB3)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[MCL](MCL_genes#tier-2-mcl-genes)|

          -|[RAF1](RAF1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[RAPGEF2](RAPGEF2)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[RCOR1](RCOR1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[RFTN1](RFTN1)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          -|[ROCK1](ROCK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[RPL1L](RPL1L)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[SAMD5](SAMD5)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[SCG3](SCG3)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[STXBP5](STXBP5)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[SWAP70](SWAP70)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          -|[TAF1](TAF1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          -|[TBK1](TBK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          -|[TCTN2](TCTN2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          -|[TNIP2](TNIP2)|MZL Tier 2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||

          -|[TRRAP](TRRAP)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[USH2A](USH2A)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          -|[WAC](WAC)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          -|[WNK1](WNK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

				MZL_Tier3.md
			
          @@ -1,4 +0,0 @@

          -|Gene|Status| First MZL study | Other lists | 

          -|:-:|:-:|:-:|:----|

          -

          -# References

				MZL_genes.md
			
          @@ -15,30 +15,28 @@ link-citations: true

           |Gene|Summary| First MZL study | Other entities | QC result |

           |:-:|:--:|:-:|:-|:-|

          -|[ACTB](ACTB)|Tier 1 GE, aSHM||[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]||

          -|[ARID1A](ARID1A)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@barisicARID1AOrchestratesSWI2024]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]||

          -|[ATM](ATM)|Tier 1 GE[@braggioGenomicAnalysisMarginal2012], FE[@camachoATMGeneInactivation2002]|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]||

          -|[BCL10](BCL10)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@xiaBCL10MutationsDefine2022]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023]||

          -|[BCL7A](BCL7A)|Tier 1 GE, FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM||[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]||

          -|[BIRC3](BIRC3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], aSHM|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021]||

          -|[BRAF](BRAF)|Tier 1 GE, FE[@wanMechanismActivationRAFERK2004]||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011]||

          -|[BTG1](BTG1)|Tier 1 GE, FE[@almasmoumFrequentLossBTG12021], aSHM||[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]||

          -|[CARD11](CARD11)|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@lenzOncogenicCARD11Mutations2008]|[Yan et al](papers/yanBCRTLRSignaling2012)|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]||

          -|[CCND3](CCND3)|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012]||

          -|[CXCR4](CXCR4)|Tier 1 GE, FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM||[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]||

          -|[DTX1](DTX1)|Tier 1 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013]||

          -|[EP300](EP300)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@pasqualucciInactivatingMutationsAcetyltransferase2011]||

          -|[EZH2](EZH2)|Tier 1 GE, FE[@sneeringerCoordinatedActivitiesWildtype2010]||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]||

          -|[FAS](FAS)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@wangFasFADDDeathDomain2010]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @schollMutationsRegionFAS2007]||

          -|[FAT1](FAT1)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||

          -|[FOXO1](FOXO1)|Tier 1 GE, FE[@trinhAnalysisFOXO1Mutations]||[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]||

          -|[H1-4](H1-4)|Tier 1 GE||||

          -|[H1-5](H1-5)|Tier 1 GE||||

          -|[ID3](ID3)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@richterRecurrentMutationID32012; @schmitzGeneticsPathogenesisDiffuse2018]||

          -|[KLF2](KLF2)|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @pasqualucciAnalysisCodingGenome2011]||

          -|[KLHL6](KLHL6)|Tier 1 GE[@ganapathiGeneticLandscapeDural2016], FE[@choiLossKLHL6Promotes2018], aSHM|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)|[@morinFrequentMutationHistonemodifying2011]||

          -|[KMT2D](KMT2D)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@zhangDisruptionKMT2DPerturbs2015]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011]||

          -|[MAP3K14](MAP3K14)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012]||

          +|[ACTB](ACTB)|MZL Tier 1||[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]||

          +|[ARID1A](ARID1A)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]||

          +|[ATM](ATM)|MZL Tier 1 |[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]||

          +|[BCL10](BCL10)|MZL Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023]||

          +|[BCL7A](BCL7A)|MZL Tier 1 ||[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]||

          +|[BIRC3](BIRC3)|MZL Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021]||

          +|[BRAF](BRAF)|MZL Tier 1 ||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011]||

          +|[BTG1](BTG1)|MZL Tier 1 ||[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]||

          +|[CARD11](CARD11)|MZL Tier 1 |[Yan et al](papers/yanBCRTLRSignaling2012)|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]||

          +|[CCND3](CCND3)|MZL Tier 1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012]||

          +|[CXCR4](CXCR4)|MZL Tier 1 ||[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]||

          +|[DTX1](DTX1)|MZL Tier 1 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013]||

          +|[EP300](EP300)|MZL Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@pasqualucciInactivatingMutationsAcetyltransferase2011]||

          +|[EZH2](EZH2)|MZL Tier 1 ||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]||

          +|[FAS](FAS)|MZL Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @schollMutationsRegionFAS2007]||

          +|[FAT1](FAT1)|MZL Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||

          +|[FOXO1](FOXO1)|MZL Tier 1 ||[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]||

          +|[ID3](ID3)|MZL Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@richterRecurrentMutationID32012; @schmitzGeneticsPathogenesisDiffuse2018]||

          +|[KLF2](KLF2)|MZL Tier 1 |[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @pasqualucciAnalysisCodingGenome2011]||

          +|[KLHL6](KLHL6)|MZL Tier 1 |[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)|[@morinFrequentMutationHistonemodifying2011]||

          +|[KMT2D](KMT2D)|MZL Tier 1 |[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011]||

          +|[MAP3K14](MAP3K14)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@ottoGeneticLesionsTRAF32012]||

           |[MPEG1](MPEG1)|Tier 1 GE||[@morinMutationalStructuralAnalysis2013]||

           |[MYD88](MYD88)|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@ngoOncogenicallyActiveMYD882011]|[Yan et al](papers/yanBCRTLRSignaling2012)|[@drevalGeneticSubdivisionsFollicular2023; @ngoOncogenicallyActiveMYD882011]||

           |[NCOR2](NCOR2)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@sarkozyMutationalLandscapeGray2021; @schmitzBurkittLymphomaPathogenesis2012]||

          @@ -51,12 +49,12 @@ link-citations: true

           |[SIN3A](SIN3A)|Tier 1 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@chapuyMolecularSubtypesDiffuse2018; @grandeGenomewideDiscoverySomatic2019]||

           |[SOCS1](SOCS1)|Tier 1 GE, FE[@melznerBiallelicMutationSOCS12005], aSHM||[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]||

           |[SPEN](SPEN)|Tier 1 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@albuquerqueEnhancingKnowledgeDiscovery2017; @sarkozyMutationalLandscapeGray2021]||

          -|[STAT6](STAT6)|Tier 1 GE, FE[@mentzPARP14NovelTarget2022]||[@ritzRecurrentMutationsSTAT62009; @yildizActivatingSTAT6Mutations2015]||

          -|[TBL1XR1](TBL1XR1)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@venturuttiTBL1XR1MutationsDrive2020]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]||

          -|[TNFAIP3](TNFAIP3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], FE[@compagnoMutationsMultipleGenes2009]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]||

          -|[TNFRSF14](TNFRSF14)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]||

          -|[TP53](TP53)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]||

          -|[TRAF3](TRAF3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]||

          +|[STAT6](STAT6)|Tier 1 ||Ritz et al||

          +|[TBL1XR1](TBL1XR1)|Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]||

          +|[TNFAIP3](TNFAIP3)|Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]||

          +|[TNFRSF14](TNFRSF14)|Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]||

          +|[TP53](TP53)|Tier 1 |[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]||

          +|[TRAF3](TRAF3)|Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]||

           ## Tier 2, low-confidence MZL genes

				pages/MZL_Tier1.md
			
          @@ -0,0 +1,44 @@

          +|Gene|Status| First MZL study | Other lists | 

          +|:-:|:-:|:-:|:----|

          +|[ACTB](ACTB)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[ARID1A](ARID1A)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[ATM](ATM)|MZL Tier 1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[BCL10](BCL10)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[BCL7A](BCL7A)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[BIRC3](BIRC3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[BRAF](BRAF)|MZL Tier 1||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[BTG1](BTG1)|MZL Tier 1||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[CARD11](CARD11)|MZL Tier 1|[Yan et al](papers/yanBCRTLRSignaling2012)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[CCND3](CCND3)|MZL Tier 1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[CXCR4](CXCR4)|MZL Tier 1||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|

          +|[DTX1](DTX1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[EP300](EP300)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[EZH2](EZH2)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[FAS](FAS)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[FAT1](FAT1)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[FOXO1](FOXO1)|MZL Tier 1||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[H1-4](H1-4)|MZL Tier 1|||

          +|[H1-5](H1-5)|MZL Tier 1|||

          +|[ID3](ID3)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

          +|[KLF2](KLF2)|MZL Tier 1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[KLHL6](KLHL6)|MZL Tier 1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[KMT2D](KMT2D)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[MAP3K14](MAP3K14)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[MPEG1](MPEG1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[MYD88](MYD88)|MZL Tier 1|[Yan et al](papers/yanBCRTLRSignaling2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|

          +|[NCOR2](NCOR2)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[NOL9](NOL9)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[NOTCH1](NOTCH1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[NOTCH2](NOTCH2)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[PCLO](PCLO)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[POU2AF1](POU2AF1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[PTPRD](PTPRD)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[SIN3A](SIN3A)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[SOCS1](SOCS1)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[SPEN](SPEN)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[STAT6](STAT6)|MZL Tier 1||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[TBL1XR1](TBL1XR1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[TNFAIP3](TNFAIP3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[TNFRSF14](TNFRSF14)|MZL Tier 1|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[TP53](TP53)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|

          +|[TRAF3](TRAF3)|MZL Tier 1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

				pages/MZL_Tier2.md
			
          @@ -0,0 +1,76 @@

          +|Gene|Status| First MZL study | Other lists | 

          +|:-:|:-:|:-:|:----|

          +|[ABCA13](ABCA13)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[ACTG1](ACTG1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[ADD2](ADD2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[AMN](AMN)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[AMOTL1](AMOTL1)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          +|[AOC2](AOC2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[ARHGAP20](ARHGAP20)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[ARHGEF15](ARHGEF15)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[ARHGEF17](ARHGEF17)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[BCOR](BCOR)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[MCL](MCL_genes#tier-2-mcl-genes)|

          +|[C6orf103](C6orf103)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[CBFA2T3](CBFA2T3)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          +|[CD79A](CD79A)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-2-bl-genes)|

          +|[CD9B](CD9B)|MZL Tier 2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||

          +|[CDC42BPB](CDC42BPB)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[FL](FL_genes#tier-2-fl-genes)|

          +|[CDKN2A](CDKN2A)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[CLGN](CLGN)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[CNBP](CNBP)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[CNKSR2](CNKSR2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[CREBBP](CREBBP)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)|

          +|[DNAH5](DNAH5)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

          +|[DNAH7](DNAH7)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[DNAI1](DNAI1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[DOCK6](DOCK6)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[DSP](DSP)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[DTNB](DTNB)|MZL Tier 2|||

          +|[DTX3L](DTX3L)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[EGR1](EGR1)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[EGR2](EGR2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          +|[EZH1](EZH1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[FAT4](FAT4)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|

          +|[FBXO11](FBXO11)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[GPR98](GPR98)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[GPS2](GPS2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          +|[HIST1H1D](HIST1H1D)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[HIST1H2AD](HIST1H2AD)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[HIST1H2AG](HIST1H2AG)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|

          +|[HIST1H2BK](HIST1H2BK)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[HIST4H4](HIST4H4)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[HRAS](HRAS)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[IKBKB](IKBKB)|MZL Tier 2|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[KAT6A](KAT6A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[KDM6A](KDM6A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[KIF26A](KIF26A)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[LRP1B](LRP1B)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[MCRS1](MCRS1)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          +|[MGA](MGA)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[MSL2](MSL2)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          +|[MYC](MYC)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[MYLK](MYLK)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[NCOA6](NCOA6)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[NRAS](NRAS)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[PACRG](PACRG)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[PARK2](PARK2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[PLA2G4D](PLA2G4D)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          +|[PLXNB3](PLXNB3)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[MCL](MCL_genes#tier-2-mcl-genes)|

          +|[RAF1](RAF1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[RAPGEF2](RAPGEF2)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[RCOR1](RCOR1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[RFTN1](RFTN1)|MZL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)|

          +|[ROCK1](ROCK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[RPL1L](RPL1L)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[SAMD5](SAMD5)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[SCG3](SCG3)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[STXBP5](STXBP5)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[SWAP70](SWAP70)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||

          +|[TAF1](TAF1)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|

          +|[TBK1](TBK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||

          +|[TCTN2](TCTN2)|MZL Tier 2|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||

          +|[TNIP2](TNIP2)|MZL Tier 2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||

          +|[TRRAP](TRRAP)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[USH2A](USH2A)|MZL Tier 2|[Parry et al](papers/parryWholeExomeSequencing2013)||

          +|[WAC](WAC)|MZL Tier 2|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|

          +|[WNK1](WNK1)|MZL Tier 2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|

				pages/MZL_Tier3.md
			
          @@ -0,0 +1,4 @@

          +|Gene|Status| First MZL study | Other lists | 

          +|:-:|:-:|:-:|:----|

          +

          +# References

...	...	@@ -1,44 +0,0 @@
1		-\|Gene\|Status\| First MZL study \| Other lists \|
2		-\|:-:\|:-:\|:-:\|:----\|
3		-\|[ACTB](ACTB)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
4		-\|[ARID1A](ARID1A)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
5		-\|[ATM](ATM)\|MZL Tier 1\|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
6		-\|[BCL10](BCL10)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
7		-\|[BCL7A](BCL7A)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
8		-\|[BIRC3](BIRC3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
9		-\|[BRAF](BRAF)\|MZL Tier 1\|\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
10		-\|[BTG1](BTG1)\|MZL Tier 1\|\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
11		-\|[CARD11](CARD11)\|MZL Tier 1\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
12		-\|[CCND3](CCND3)\|MZL Tier 1\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
13		-\|[CXCR4](CXCR4)\|MZL Tier 1\|\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)\|
14		-\|[DTX1](DTX1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
15		-\|[EP300](EP300)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
16		-\|[EZH2](EZH2)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
17		-\|[FAS](FAS)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
18		-\|[FAT1](FAT1)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[PMBL](PMBL_genes#tier-2-pmbl-genes)\|
19		-\|[FOXO1](FOXO1)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
20		-\|[H1-4](H1-4)\|MZL Tier 1\|\|\|
21		-\|[H1-5](H1-5)\|MZL Tier 1\|\|\|
22		-\|[ID3](ID3)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|
23		-\|[KLF2](KLF2)\|MZL Tier 1\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
24		-\|[KLHL6](KLHL6)\|MZL Tier 1\|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
25		-\|[KMT2D](KMT2D)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
26		-\|[MAP3K14](MAP3K14)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[PMBL](PMBL_genes#tier-1-pmbl-genes)\|
27		-\|[MPEG1](MPEG1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
28		-\|[MYD88](MYD88)\|MZL Tier 1\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)\|
29		-\|[NCOR2](NCOR2)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
30		-\|[NOL9](NOL9)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
31		-\|[NOTCH1](NOTCH1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
32		-\|[NOTCH2](NOTCH2)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
33		-\|[PCLO](PCLO)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
34		-\|[POU2AF1](POU2AF1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
35		-\|[PTPRD](PTPRD)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
36		-\|[SIN3A](SIN3A)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
37		-\|[SOCS1](SOCS1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
38		-\|[SPEN](SPEN)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
39		-\|[STAT6](STAT6)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
40		-\|[TBL1XR1](TBL1XR1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
41		-\|[TNFAIP3](TNFAIP3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
42		-\|[TNFRSF14](TNFRSF14)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
43		-\|[TP53](TP53)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
44		-\|[TRAF3](TRAF3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|

...	...	@@ -1,76 +0,0 @@
1		-\|Gene\|Status\| First MZL study \| Other lists \|
2		-\|:-:\|:-:\|:-:\|:----\|
3		-\|[ABCA13](ABCA13)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[PMBL](PMBL_genes#tier-2-pmbl-genes)\|
4		-\|[ACTG1](ACTG1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
5		-\|[ADD2](ADD2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
6		-\|[AMN](AMN)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
7		-\|[AMOTL1](AMOTL1)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
8		-\|[AOC2](AOC2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
9		-\|[ARHGAP20](ARHGAP20)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
10		-\|[ARHGEF15](ARHGEF15)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
11		-\|[ARHGEF17](ARHGEF17)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
12		-\|[BCOR](BCOR)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[MCL](MCL_genes#tier-2-mcl-genes)\|
13		-\|[C6orf103](C6orf103)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
14		-\|[CBFA2T3](CBFA2T3)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
15		-\|[CD79A](CD79A)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-2-bl-genes)\|
16		-\|[CD9B](CD9B)\|MZL Tier 2\|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)\|\|
17		-\|[CDC42BPB](CDC42BPB)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[FL](FL_genes#tier-2-fl-genes)\|
18		-\|[CDKN2A](CDKN2A)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
19		-\|[CLGN](CLGN)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
20		-\|[CNBP](CNBP)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
21		-\|[CNKSR2](CNKSR2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
22		-\|[CREBBP](CREBBP)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
23		-\|[DNAH5](DNAH5)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|
24		-\|[DNAH7](DNAH7)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
25		-\|[DNAI1](DNAI1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
26		-\|[DOCK6](DOCK6)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
27		-\|[DSP](DSP)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
28		-\|[DTNB](DTNB)\|MZL Tier 2\|\|\|
29		-\|[DTX3L](DTX3L)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
30		-\|[EGR1](EGR1)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
31		-\|[EGR2](EGR2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
32		-\|[EZH1](EZH1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
33		-\|[FAT4](FAT4)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-2-mcl-genes)\|
34		-\|[FBXO11](FBXO11)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
35		-\|[GPR98](GPR98)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
36		-\|[GPS2](GPS2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
37		-\|[HIST1H1D](HIST1H1D)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
38		-\|[HIST1H2AD](HIST1H2AD)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
39		-\|[HIST1H2AG](HIST1H2AG)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
40		-\|[HIST1H2BK](HIST1H2BK)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
41		-\|[HIST4H4](HIST4H4)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
42		-\|[HRAS](HRAS)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
43		-\|[IKBKB](IKBKB)\|MZL Tier 2\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
44		-\|[KAT6A](KAT6A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
45		-\|[KDM6A](KDM6A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
46		-\|[KIF26A](KIF26A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
47		-\|[LRP1B](LRP1B)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
48		-\|[MCRS1](MCRS1)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
49		-\|[MGA](MGA)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
50		-\|[MSL2](MSL2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
51		-\|[MYC](MYC)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
52		-\|[MYLK](MYLK)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
53		-\|[NCOA6](NCOA6)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
54		-\|[NRAS](NRAS)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
55		-\|[PACRG](PACRG)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
56		-\|[PARK2](PARK2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
57		-\|[PLA2G4D](PLA2G4D)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
58		-\|[PLXNB3](PLXNB3)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[MCL](MCL_genes#tier-2-mcl-genes)\|
59		-\|[RAF1](RAF1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
60		-\|[RAPGEF2](RAPGEF2)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
61		-\|[RCOR1](RCOR1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
62		-\|[RFTN1](RFTN1)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
63		-\|[ROCK1](ROCK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
64		-\|[RPL1L](RPL1L)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
65		-\|[SAMD5](SAMD5)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
66		-\|[SCG3](SCG3)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
67		-\|[STXBP5](STXBP5)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
68		-\|[SWAP70](SWAP70)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
69		-\|[TAF1](TAF1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
70		-\|[TBK1](TBK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
71		-\|[TCTN2](TCTN2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
72		-\|[TNIP2](TNIP2)\|MZL Tier 2\|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)\|\|
73		-\|[TRRAP](TRRAP)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
74		-\|[USH2A](USH2A)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
75		-\|[WAC](WAC)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
76		-\|[WNK1](WNK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|

...	...	@@ -1,4 +0,0 @@
1		-\|Gene\|Status\| First MZL study \| Other lists \|
2		-\|:-:\|:-:\|:-:\|:----\|
3		-
4		-# References

...	...	@@ -15,30 +15,28 @@ link-citations: true
15	15
16	16	\|Gene\|Summary\| First MZL study \| Other entities \| QC result \|
17	17	\|:-:\|:--:\|:-:\|:-\|:-\|
18		-\|[ACTB](ACTB)\|Tier 1 GE, aSHM\|\|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]\|\|
19		-\|[ARID1A](ARID1A)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@barisicARID1AOrchestratesSWI2024]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]\|\|
20		-\|[ATM](ATM)\|Tier 1 GE[@braggioGenomicAnalysisMarginal2012], FE[@camachoATMGeneInactivation2002]\|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)\|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]\|\|
21		-\|[BCL10](BCL10)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@xiaBCL10MutationsDefine2022]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023]\|\|
22		-\|[BCL7A](BCL7A)\|Tier 1 GE, FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM\|\|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]\|\|
23		-\|[BIRC3](BIRC3)\|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], aSHM\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021]\|\|
24		-\|[BRAF](BRAF)\|Tier 1 GE, FE[@wanMechanismActivationRAFERK2004]\|\|[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011]\|\|
25		-\|[BTG1](BTG1)\|Tier 1 GE, FE[@almasmoumFrequentLossBTG12021], aSHM\|\|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]\|\|
26		-\|[CARD11](CARD11)\|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@lenzOncogenicCARD11Mutations2008]\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]\|\|
27		-\|[CCND3](CCND3)\|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], FE[@schmitzBurkittLymphomaPathogenesis2012]\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012]\|\|
28		-\|[CXCR4](CXCR4)\|Tier 1 GE, FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM\|\|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]\|\|
29		-\|[DTX1](DTX1)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], aSHM\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013]\|\|
30		-\|[EP300](EP300)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@pasqualucciInactivatingMutationsAcetyltransferase2011]\|\|
31		-\|[EZH2](EZH2)\|Tier 1 GE, FE[@sneeringerCoordinatedActivitiesWildtype2010]\|\|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]\|\|
32		-\|[FAS](FAS)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@wangFasFADDDeathDomain2010]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@morinFrequentMutationHistonemodifying2011; @schollMutationsRegionFAS2007]\|\|
33		-\|[FAT1](FAT1)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|\|
34		-\|[FOXO1](FOXO1)\|Tier 1 GE, FE[@trinhAnalysisFOXO1Mutations]\|\|[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]\|\|
35		-\|[H1-4](H1-4)\|Tier 1 GE\|\|\|\|
36		-\|[H1-5](H1-5)\|Tier 1 GE\|\|\|\|
37		-\|[ID3](ID3)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@richterRecurrentMutationID32012; @schmitzGeneticsPathogenesisDiffuse2018]\|\|
38		-\|[KLF2](KLF2)\|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], aSHM\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @pasqualucciAnalysisCodingGenome2011]\|\|
39		-\|[KLHL6](KLHL6)\|Tier 1 GE[@ganapathiGeneticLandscapeDural2016], FE[@choiLossKLHL6Promotes2018], aSHM\|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)\|[@morinFrequentMutationHistonemodifying2011]\|\|
40		-\|[KMT2D](KMT2D)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@zhangDisruptionKMT2DPerturbs2015]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011]\|\|
41		-\|[MAP3K14](MAP3K14)\|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@ottoGeneticLesionsTRAF32012]\|\|
	18	+\|[ACTB](ACTB)\|MZL Tier 1\|\|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]\|\|
	19	+\|[ARID1A](ARID1A)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]\|\|
	20	+\|[ATM](ATM)\|MZL Tier 1 \|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)\|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]\|\|
	21	+\|[BCL10](BCL10)\|MZL Tier 1 \|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023]\|\|
	22	+\|[BCL7A](BCL7A)\|MZL Tier 1 \|\|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]\|\|
	23	+\|[BIRC3](BIRC3)\|MZL Tier 1 \|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021]\|\|
	24	+\|[BRAF](BRAF)\|MZL Tier 1 \|\|[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011]\|\|
	25	+\|[BTG1](BTG1)\|MZL Tier 1 \|\|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]\|\|
	26	+\|[CARD11](CARD11)\|MZL Tier 1 \|[Yan et al](papers/yanBCRTLRSignaling2012)\|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]\|\|
	27	+\|[CCND3](CCND3)\|MZL Tier 1\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012]\|\|
	28	+\|[CXCR4](CXCR4)\|MZL Tier 1 \|\|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]\|\|
	29	+\|[DTX1](DTX1)\|MZL Tier 1 GE[@rossiCodingGenomeSplenic2012], aSHM\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013]\|\|
	30	+\|[EP300](EP300)\|MZL Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@pasqualucciInactivatingMutationsAcetyltransferase2011]\|\|
	31	+\|[EZH2](EZH2)\|MZL Tier 1 \|\|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]\|\|
	32	+\|[FAS](FAS)\|MZL Tier 1 \|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@morinFrequentMutationHistonemodifying2011; @schollMutationsRegionFAS2007]\|\|
	33	+\|[FAT1](FAT1)\|MZL Tier 1 \|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|\|
	34	+\|[FOXO1](FOXO1)\|MZL Tier 1 \|\|[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]\|\|
	35	+\|[ID3](ID3)\|MZL Tier 1 \|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@richterRecurrentMutationID32012; @schmitzGeneticsPathogenesisDiffuse2018]\|\|
	36	+\|[KLF2](KLF2)\|MZL Tier 1 \|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @pasqualucciAnalysisCodingGenome2011]\|\|
	37	+\|[KLHL6](KLHL6)\|MZL Tier 1 \|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)\|[@morinFrequentMutationHistonemodifying2011]\|\|
	38	+\|[KMT2D](KMT2D)\|MZL Tier 1 \|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011]\|\|
	39	+\|[MAP3K14](MAP3K14)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@ottoGeneticLesionsTRAF32012]\|\|
42	40	\|[MPEG1](MPEG1)\|Tier 1 GE\|\|[@morinMutationalStructuralAnalysis2013]\|\|
43	41	\|[MYD88](MYD88)\|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@ngoOncogenicallyActiveMYD882011]\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[@drevalGeneticSubdivisionsFollicular2023; @ngoOncogenicallyActiveMYD882011]\|\|
44	42	\|[NCOR2](NCOR2)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@sarkozyMutationalLandscapeGray2021; @schmitzBurkittLymphomaPathogenesis2012]\|\|
...	...	@@ -51,12 +49,12 @@ link-citations: true
51	49	\|[SIN3A](SIN3A)\|Tier 1 GE[@rossiCodingGenomeSplenic2012]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@chapuyMolecularSubtypesDiffuse2018; @grandeGenomewideDiscoverySomatic2019]\|\|
52	50	\|[SOCS1](SOCS1)\|Tier 1 GE, FE[@melznerBiallelicMutationSOCS12005], aSHM\|\|[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]\|\|
53	51	\|[SPEN](SPEN)\|Tier 1 GE[@rossiCodingGenomeSplenic2012]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@albuquerqueEnhancingKnowledgeDiscovery2017; @sarkozyMutationalLandscapeGray2021]\|\|
54		-\|[STAT6](STAT6)\|Tier 1 GE, FE[@mentzPARP14NovelTarget2022]\|\|[@ritzRecurrentMutationsSTAT62009; @yildizActivatingSTAT6Mutations2015]\|\|
55		-\|[TBL1XR1](TBL1XR1)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@venturuttiTBL1XR1MutationsDrive2020]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]\|\|
56		-\|[TNFAIP3](TNFAIP3)\|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], FE[@compagnoMutationsMultipleGenes2009]\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]\|\|
57		-\|[TNFRSF14](TNFRSF14)\|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@]\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]\|\|
58		-\|[TP53](TP53)\|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]\|\|
59		-\|[TRAF3](TRAF3)\|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]\|\|
	52	+\|[STAT6](STAT6)\|Tier 1 \|\|Ritz et al\|\|
	53	+\|[TBL1XR1](TBL1XR1)\|Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]\|\|
	54	+\|[TNFAIP3](TNFAIP3)\|Tier 1 \|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]\|\|
	55	+\|[TNFRSF14](TNFRSF14)\|Tier 1 \|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]\|\|
	56	+\|[TP53](TP53)\|Tier 1 \|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]\|\|
	57	+\|[TRAF3](TRAF3)\|Tier 1 \|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]\|\|
60	58
61	59	## Tier 2, low-confidence MZL genes
62	60

...	...	@@ -0,0 +1,44 @@
	1	+\|Gene\|Status\| First MZL study \| Other lists \|
	2	+\|:-:\|:-:\|:-:\|:----\|
	3	+\|[ACTB](ACTB)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	4	+\|[ARID1A](ARID1A)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	5	+\|[ATM](ATM)\|MZL Tier 1\|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	6	+\|[BCL10](BCL10)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	7	+\|[BCL7A](BCL7A)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	8	+\|[BIRC3](BIRC3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	9	+\|[BRAF](BRAF)\|MZL Tier 1\|\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	10	+\|[BTG1](BTG1)\|MZL Tier 1\|\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	11	+\|[CARD11](CARD11)\|MZL Tier 1\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	12	+\|[CCND3](CCND3)\|MZL Tier 1\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	13	+\|[CXCR4](CXCR4)\|MZL Tier 1\|\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)\|
	14	+\|[DTX1](DTX1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	15	+\|[EP300](EP300)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	16	+\|[EZH2](EZH2)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	17	+\|[FAS](FAS)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	18	+\|[FAT1](FAT1)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	19	+\|[FOXO1](FOXO1)\|MZL Tier 1\|\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	20	+\|[H1-4](H1-4)\|MZL Tier 1\|\|\|
	21	+\|[H1-5](H1-5)\|MZL Tier 1\|\|\|
	22	+\|[ID3](ID3)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|
	23	+\|[KLF2](KLF2)\|MZL Tier 1\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	24	+\|[KLHL6](KLHL6)\|MZL Tier 1\|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	25	+\|[KMT2D](KMT2D)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	26	+\|[MAP3K14](MAP3K14)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	27	+\|[MPEG1](MPEG1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	28	+\|[MYD88](MYD88)\|MZL Tier 1\|[Yan et al](papers/yanBCRTLRSignaling2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)\|
	29	+\|[NCOR2](NCOR2)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	30	+\|[NOL9](NOL9)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	31	+\|[NOTCH1](NOTCH1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	32	+\|[NOTCH2](NOTCH2)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	33	+\|[PCLO](PCLO)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	34	+\|[POU2AF1](POU2AF1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	35	+\|[PTPRD](PTPRD)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	36	+\|[SIN3A](SIN3A)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	37	+\|[SOCS1](SOCS1)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	38	+\|[SPEN](SPEN)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	39	+\|[STAT6](STAT6)\|MZL Tier 1\|\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	40	+\|[TBL1XR1](TBL1XR1)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	41	+\|[TNFAIP3](TNFAIP3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	42	+\|[TNFRSF14](TNFRSF14)\|MZL Tier 1\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	43	+\|[TP53](TP53)\|MZL Tier 1\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes), [MCL](MCL_genes#tier-1-mcl-genes)\|
	44	+\|[TRAF3](TRAF3)\|MZL Tier 1\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|

...	...	@@ -0,0 +1,76 @@
	1	+\|Gene\|Status\| First MZL study \| Other lists \|
	2	+\|:-:\|:-:\|:-:\|:----\|
	3	+\|[ABCA13](ABCA13)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	4	+\|[ACTG1](ACTG1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	5	+\|[ADD2](ADD2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	6	+\|[AMN](AMN)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	7	+\|[AMOTL1](AMOTL1)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
	8	+\|[AOC2](AOC2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	9	+\|[ARHGAP20](ARHGAP20)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	10	+\|[ARHGEF15](ARHGEF15)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	11	+\|[ARHGEF17](ARHGEF17)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	12	+\|[BCOR](BCOR)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[MCL](MCL_genes#tier-2-mcl-genes)\|
	13	+\|[C6orf103](C6orf103)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	14	+\|[CBFA2T3](CBFA2T3)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
	15	+\|[CD79A](CD79A)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-2-bl-genes)\|
	16	+\|[CD9B](CD9B)\|MZL Tier 2\|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)\|\|
	17	+\|[CDC42BPB](CDC42BPB)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[FL](FL_genes#tier-2-fl-genes)\|
	18	+\|[CDKN2A](CDKN2A)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	19	+\|[CLGN](CLGN)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	20	+\|[CNBP](CNBP)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	21	+\|[CNKSR2](CNKSR2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	22	+\|[CREBBP](CREBBP)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-1-pmbl-genes)\|
	23	+\|[DNAH5](DNAH5)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|
	24	+\|[DNAH7](DNAH7)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	25	+\|[DNAI1](DNAI1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	26	+\|[DOCK6](DOCK6)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	27	+\|[DSP](DSP)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	28	+\|[DTNB](DTNB)\|MZL Tier 2\|\|\|
	29	+\|[DTX3L](DTX3L)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	30	+\|[EGR1](EGR1)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[FL](FL_genes#tier-2-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	31	+\|[EGR2](EGR2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
	32	+\|[EZH1](EZH1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	33	+\|[FAT4](FAT4)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes), [MCL](MCL_genes#tier-2-mcl-genes)\|
	34	+\|[FBXO11](FBXO11)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	35	+\|[GPR98](GPR98)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	36	+\|[GPS2](GPS2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
	37	+\|[HIST1H1D](HIST1H1D)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	38	+\|[HIST1H2AD](HIST1H2AD)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	39	+\|[HIST1H2AG](HIST1H2AG)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)\|
	40	+\|[HIST1H2BK](HIST1H2BK)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	41	+\|[HIST4H4](HIST4H4)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	42	+\|[HRAS](HRAS)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	43	+\|[IKBKB](IKBKB)\|MZL Tier 2\|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	44	+\|[KAT6A](KAT6A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	45	+\|[KDM6A](KDM6A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	46	+\|[KIF26A](KIF26A)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	47	+\|[LRP1B](LRP1B)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	48	+\|[MCRS1](MCRS1)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
	49	+\|[MGA](MGA)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	50	+\|[MSL2](MSL2)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
	51	+\|[MYC](MYC)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	52	+\|[MYLK](MYLK)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	53	+\|[NCOA6](NCOA6)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	54	+\|[NRAS](NRAS)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	55	+\|[PACRG](PACRG)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	56	+\|[PARK2](PARK2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	57	+\|[PLA2G4D](PLA2G4D)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
	58	+\|[PLXNB3](PLXNB3)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[MCL](MCL_genes#tier-2-mcl-genes)\|
	59	+\|[RAF1](RAF1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	60	+\|[RAPGEF2](RAPGEF2)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	61	+\|[RCOR1](RCOR1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	62	+\|[RFTN1](RFTN1)\|MZL Tier 2\|\|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [PMBL](PMBL_genes#tier-2-pmbl-genes)\|
	63	+\|[ROCK1](ROCK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	64	+\|[RPL1L](RPL1L)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	65	+\|[SAMD5](SAMD5)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	66	+\|[SCG3](SCG3)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	67	+\|[STXBP5](STXBP5)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	68	+\|[SWAP70](SWAP70)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|\|
	69	+\|[TAF1](TAF1)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)\|
	70	+\|[TBK1](TBK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|\|
	71	+\|[TCTN2](TCTN2)\|MZL Tier 2\|[Spina et al](papers/spinaGeneticsNodalMarginal2016)\|\|
	72	+\|[TNIP2](TNIP2)\|MZL Tier 2\|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)\|\|
	73	+\|[TRRAP](TRRAP)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	74	+\|[USH2A](USH2A)\|MZL Tier 2\|[Parry et al](papers/parryWholeExomeSequencing2013)\|\|
	75	+\|[WAC](WAC)\|MZL Tier 2\|[Rossi et al](papers/rossiCodingGenomeSplenic2012)\|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)\|
	76	+\|[WNK1](WNK1)\|MZL Tier 2\|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)\|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)\|

...	...	@@ -0,0 +1,4 @@
	1	+\|Gene\|Status\| First MZL study \| Other lists \|
	2	+\|:-:\|:-:\|:-:\|:----\|
	3	+
	4	+# References