d3e116de358eb098da48782d73ffcf5573d8d76d
DLBCL_genes.md
| ... | ... | @@ -231,51 +231,51 @@ link-citations: true |
| 231 | 231 | |79|[MALAT1](MALAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 232 | 232 | |80|[MAP2K1](MAP2K1)|2|[Shin et al](papers/shinBRAFV600EMAP2K12015)[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]| |
| 233 | 233 | |81|[MCL1](MCL1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]| |
| 234 | -||[MECOM](MECOM)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 235 | -||[MET](MET)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 236 | -||[MIR142](MIR142)|2, aSHM|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 237 | -||[MIR155HG](MIR155HG)|2, aSHM||| |
|
| 238 | -||[MPDZ](MPDZ)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]| |
|
| 239 | -||[MSH6](MSH6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 240 | -||[MYBPC2](MYBPC2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 241 | -||[MYO1E](MYO1E)|2, aSHM||| |
|
| 242 | -||[MYOM2](MYOM2)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
|
| 243 | -||[NAV1](NAV1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 244 | -||[NCOA3](NCOA3)|2, aSHM||| |
|
| 245 | -||[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 246 | -||[NEAT1](NEAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 247 | -||[NF1](NF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 248 | -||[NFKB1](NFKB1)|2||| |
|
| 249 | -||[NLRC5](NLRC5)|2||| |
|
| 250 | -||[NLRP5](NLRP5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 251 | -||[ODZ3](ODZ3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 252 | -||[OR6K3](OR6K3)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 253 | -||[P2RX5](P2RX5)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 254 | -||[PAPOLG](PAPOLG)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 255 | -||[PASD1](PASD1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 256 | -||[PASK](PASK)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 257 | -||[PAX5](PAX5)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 258 | -||[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]| |
|
| 259 | -||[PCDHB11](PCDHB11)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 260 | -||[PCDHB6](PCDHB6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 261 | -||[PCLO](PCLO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 262 | -||[PDGFC](PDGFC)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 263 | -||[PDS5B](PDS5B)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 264 | -||[PIK3R1](PIK3R1)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]| |
|
| 265 | -||[PNPO](PNPO)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 266 | -||[PPP1R9B](PPP1R9B)|2||| |
|
| 267 | -||[PRKCB](PRKCB)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 268 | -||[PRKDC](PRKDC)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 269 | -||[PRPS1](PRPS1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 270 | -||[PTMA](PTMA)|2, aSHM||| |
|
| 271 | -||[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]| |
|
| 272 | -||[PTPN6](PTPN6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 273 | -||[RAC2](RAC2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]| |
|
| 274 | -||[RCC](RCC)|2, aSHM||| |
|
| 275 | -||[RFTN1](RFTN1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 276 | -||[RFXAP](RFXAP)|2||| |
|
| 277 | -||[RHEX](RHEX)|2, aSHM||| |
|
| 278 | -||[RHOH](RHOH)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 234 | +|82|[MECOM](MECOM)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 235 | +|83|[MET](MET)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 236 | +|84|[MIR142](MIR142)|2, aSHM|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 237 | +|85|[MIR155HG](MIR155HG)|2, aSHM||| |
|
| 238 | +|86|[MPDZ](MPDZ)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]| |
|
| 239 | +|87|[MSH6](MSH6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 240 | +|88|[MYBPC2](MYBPC2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 241 | +|89|[MYO1E](MYO1E)|2, aSHM||| |
|
| 242 | +|90|[MYOM2](MYOM2)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
|
| 243 | +|91|[NAV1](NAV1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 244 | +|92|[NCOA3](NCOA3)|2, aSHM||| |
|
| 245 | +|93|[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 246 | +|94|[NEAT1](NEAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 247 | +|95|[NF1](NF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 248 | +|96|[NFKB1](NFKB1)|2||| |
|
| 249 | +|97|[NLRC5](NLRC5)|2||| |
|
| 250 | +|98|[NLRP5](NLRP5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 251 | +|99|[ODZ3](ODZ3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 252 | +|100|[OR6K3](OR6K3)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 253 | +|101|[P2RX5](P2RX5)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 254 | +|102|[PAPOLG](PAPOLG)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 255 | +|103|[PASD1](PASD1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 256 | +|104|[PASK](PASK)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 257 | +|105|[PAX5](PAX5)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 258 | +|106|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]| |
|
| 259 | +|107|[PCDHB11](PCDHB11)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 260 | +|108|[PCDHB6](PCDHB6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 261 | +|109|[PCLO](PCLO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 262 | +|110|[PDGFC](PDGFC)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 263 | +|111|[PDS5B](PDS5B)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 264 | +|112|[PIK3R1](PIK3R1)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]| |
|
| 265 | +|113|[PNPO](PNPO)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 266 | +|114|[PPP1R9B](PPP1R9B)|2||| |
|
| 267 | +|115|[PRKCB](PRKCB)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 268 | +|116|[PRKDC](PRKDC)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 269 | +|117|[PRPS1](PRPS1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 270 | +|118|[PTMA](PTMA)|2, aSHM||| |
|
| 271 | +|119|[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]| |
|
| 272 | +|120|[PTPN6](PTPN6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 273 | +|121|[RAC2](RAC2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]| |
|
| 274 | +|122|[RCC](RCC)|2, aSHM||| |
|
| 275 | +|123|[RFTN1](RFTN1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 276 | +|124|[RFXAP](RFXAP)|2||| |
|
| 277 | +|125|[RHEX](RHEX)|2, aSHM||| |
|
| 278 | +|126|[RHOH](RHOH)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 279 | 279 | ||[RUBCNL](RUBCNL)|2, aSHM||| |
| 280 | 280 | ||[S1PR1](S1PR1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 281 | 281 | ||[SAMD9L](SAMD9L)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |