Changes in d824dca: test

				DLBCL_genes.md
			
          @@ -13,41 +13,41 @@ link-citations: true

           ### *124 total*

          -|Gene|Tier| First DLBCL study | Other entities | QC result |

          +|Gene|Summary| First DLBCL study | Other entities | QC result |

           |:-:|:-:|:-:|:-|:-|

           |[ACTB](ACTB)|Tier 1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]||

           |[ACTG1](ACTG1)|Tier 1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]||

           |[ARID1A](ARID1A)|Tier 1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]||

           |[ATM](ATM)|Tier 1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]||

          -|[B2M](B2M)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]||

          -|[BCL10](BCL10)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]||

          -|[BCL2](BCL2)|Tier 1; EE; CE|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]||

          -|[BCL6](BCL6)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]||

          -|[BCL7A](BCL7A)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]||

          +|[B2M](B2M)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]||

          +|[BCL10](BCL10)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]||

          +|[BCL2](BCL2)|Tier 1, EE, CE|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]||

          +|[BCL6](BCL6)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]||

          +|[BCL7A](BCL7A)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]||

           |[BIRC6](BIRC6)|Tier 1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]||

           |[BRAF](BRAF)|Tier 1|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011a)[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]||

          -|[BTG1](BTG1)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]||

          -|[BTG2](BTG2)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]||

          +|[BTG1](BTG1)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]||

          +|[BTG2](BTG2)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]||

           |[BTK](BTK)|Tier 1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]||

          -|[CARD11](CARD11)|Tier 1; EE; CE|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]||

          -|[CCND3](CCND3)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]||

          -|[CD58](CD58)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]||

          +|[CARD11](CARD11)|Tier 1, EE, CE|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]||

          +|[CCND3](CCND3)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]||

          +|[CD58](CD58)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]||

           |[CD70](CD70)|Tier 1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]||

          -|[CD79B](CD79B)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]||

          +|[CD79B](CD79B)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]||

           |[CD83](CD83)|Tier 1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]||

          -|[CDKN2A](CDKN2A)|Tier 1; EE; CE|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]||

          -|[CREBBP](CREBBP)|Tier 1; EE; CE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]||

          +|[CDKN2A](CDKN2A)|Tier 1, EE, CE|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]||

          +|[CREBBP](CREBBP)|Tier 1, EE, CE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]||

           |[CXCR4](CXCR4)|Tier 1|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]||

           |[CXCR5](CXCR5)|Tier 1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]||

          -|[DDX3X](DDX3X)|Tier 1; EE; CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]||

          +|[DDX3X](DDX3X)|Tier 1, EE, CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]||

           |[DTX1](DTX1)|Tier 1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]||

           |[DUSP2](DUSP2)|Tier 1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@dunsCharacterizationDLBCLPMBL2021b]||

           |[EBF1](EBF1)|Tier 1|[Bohle et al](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]||

           |[EEF1A1](EEF1A1)|Tier 1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]||

          -|[EP300](EP300)|Tier 1; EE; CE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c]||

          +|[EP300](EP300)|Tier 1, EE, CE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c]||

           |[ETS1](ETS1)|Tier 1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]||

           |[ETV6](ETV6)|Tier 1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|||

          -|[EZH2](EZH2)|Tier 1; EE; CE|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]||

          +|[EZH2](EZH2)|Tier 1, EE, CE|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]||

           |[FAS](FAS)|Tier 1|[Scholl et al](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]||

           |[FBXO11](FBXO11)|Tier 1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]||

           |[FBXW7](FBXW7)|Tier 1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|||

          @@ -87,7 +87,7 @@ link-citations: true

           |[LCOR](LCOR)|Tier 1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|||

           |[LRRN3](LRRN3)|Tier 1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a]||

           |[LTB](LTB)|Tier 1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020]||

          -|[MEF2B](MEF2B)|Tier 1; EE; CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]||

          +|[MEF2B](MEF2B)|Tier 1, EE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]||

           |[MEF2C](MEF2C)|Tier 1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|||

           |[MGA](MGA)|Tier 1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]||

           |[MPEG1](MPEG1)|Tier 1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|||

          @@ -118,7 +118,7 @@ link-citations: true

           |[SF3B1](SF3B1)|Tier 1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]||

           |[SGK1](SGK1)|Tier 1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]||

           |[SIN3A](SIN3A)|Tier 1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]||

          -|[SMARCA4](SMARCA4)|Tier 1; EE; CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]||

          +|[SMARCA4](SMARCA4)|Tier 1, EE, CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]||

           |[SOCS1](SOCS1)|Tier 1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wenigerMutationsTumorSuppressor2006a]||

           |[SPEN](SPEN)|Tier 1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]||

           |[STAT3](STAT3)|Tier 1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|||

          @@ -144,7 +144,7 @@ link-citations: true

           ### *181 total*

          -|Gene|Tier| First DLBCL study | Other entities | QC result |

          +|Gene|Summary| First DLBCL study | Other entities | QC result |

           |:-:|:-:|:-:|:-|:-|

           |[ABI3BP](ABI3BP)|Tier 2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||PASS|

           |[ADAMTS1](ADAMTS1)|Tier 2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||PASS|

          @@ -209,7 +209,7 @@ link-citations: true

           |[HLA-DMA](HLA-DMA)|Tier 2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|||

           |[HNF1B](HNF1B)|Tier 2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|||

           |[HNRNPD](HNRNPD)|Tier 2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|||

          -|[HNRNPH1](HNRNPH1)|Tier 2; EE; CE|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|||

          +|[HNRNPH1](HNRNPH1)|Tier 2, EE, CE|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|||

           |[ID3](ID3)|Tier 2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]||

           |[IFNGR1](IFNGR1)|Tier 2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||PASS|

           |[IGLL5](IGLL5)|Tier 2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]||

          @@ -332,7 +332,7 @@ link-citations: true

           ### *386 total*

          -|Gene|Tier| First DLBCL study | Other entities | QC result |

          +|Gene|Summary| First DLBCL study | Other entities | QC result |

           |:-:|:-:|:-:|:-|:-|

           |[ABCA3](ABCA3)|Tier 3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@beaLandscapeSomaticMutations2013]||

           |[ABCA4](ABCA4)|Tier 3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|||

...	...	@@ -13,41 +13,41 @@ link-citations: true
13	13
14	14	### 124 total
15	15
16		-\|Gene\|Tier\| First DLBCL study \| Other entities \| QC result \|
	16	+\|Gene\|Summary\| First DLBCL study \| Other entities \| QC result \|
17	17	\|:-:\|:-:\|:-:\|:-\|:-\|
18	18	\|[ACTB](ACTB)\|Tier 1\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]\|[@wienandGenomicAnalysesFlowsorted2019b]\|\|
19	19	\|[ACTG1](ACTG1)\|Tier 1\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]\|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]\|\|
20	20	\|[ARID1A](ARID1A)\|Tier 1\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]\|\|
21	21	\|[ATM](ATM)\|Tier 1\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]\|\|
22		-\|[B2M](B2M)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]\|\|
23		-\|[BCL10](BCL10)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]\|\|
24		-\|[BCL2](BCL2)\|Tier 1; EE; CE\|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]\|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]\|\|
25		-\|[BCL6](BCL6)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@loveGeneticLandscapeMutations2012]\|\|
26		-\|[BCL7A](BCL7A)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]\|\|
	22	+\|[B2M](B2M)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]\|\|
	23	+\|[BCL10](BCL10)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]\|\|
	24	+\|[BCL2](BCL2)\|Tier 1, EE, CE\|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]\|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]\|\|
	25	+\|[BCL6](BCL6)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@loveGeneticLandscapeMutations2012]\|\|
	26	+\|[BCL7A](BCL7A)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]\|\|
27	27	\|[BIRC6](BIRC6)\|Tier 1\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@sarkozyMutationalLandscapeGray2021a]\|\|
28	28	\|[BRAF](BRAF)\|Tier 1\|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011a)[@tiacciBRAFMutationsHairycell2011a]\|[@loveGeneticLandscapeMutations2012]\|\|
29		-\|[BTG1](BTG1)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]\|\|
30		-\|[BTG2](BTG2)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@loveGeneticLandscapeMutations2012]\|\|
	29	+\|[BTG1](BTG1)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]\|\|
	30	+\|[BTG2](BTG2)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@loveGeneticLandscapeMutations2012]\|\|
31	31	\|[BTK](BTK)\|Tier 1\|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]\|[@krysiakRecurrentSomaticMutations2017b]\|\|
32		-\|[CARD11](CARD11)\|Tier 1; EE; CE\|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]\|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]\|\|
33		-\|[CCND3](CCND3)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]\|\|
34		-\|[CD58](CD58)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@schneiderAlterationsCD58Gene2015a]\|\|
	32	+\|[CARD11](CARD11)\|Tier 1, EE, CE\|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]\|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]\|\|
	33	+\|[CCND3](CCND3)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]\|\|
	34	+\|[CD58](CD58)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@schneiderAlterationsCD58Gene2015a]\|\|
35	35	\|[CD70](CD70)\|Tier 1\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@russler-germainMutationsAssociatedProgression2023b]\|\|
36		-\|[CD79B](CD79B)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@paneaWholeGenomeLandscape2019]\|\|
	36	+\|[CD79B](CD79B)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@paneaWholeGenomeLandscape2019]\|\|
37	37	\|[CD83](CD83)\|Tier 1\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]\|\|
38		-\|[CDKN2A](CDKN2A)\|Tier 1; EE; CE\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]\|\|
39		-\|[CREBBP](CREBBP)\|Tier 1; EE; CE\|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]\|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]\|\|
	38	+\|[CDKN2A](CDKN2A)\|Tier 1, EE, CE\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]\|\|
	39	+\|[CREBBP](CREBBP)\|Tier 1, EE, CE\|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]\|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]\|\|
40	40	\|[CXCR4](CXCR4)\|Tier 1\|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]\|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]\|\|
41	41	\|[CXCR5](CXCR5)\|Tier 1\|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]\|[@mottokIntegrativeGenomicAnalysis2019b]\|\|
42		-\|[DDX3X](DDX3X)\|Tier 1; EE; CE\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]\|\|
	42	+\|[DDX3X](DDX3X)\|Tier 1, EE, CE\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]\|\|
43	43	\|[DTX1](DTX1)\|Tier 1\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]\|\|
44	44	\|[DUSP2](DUSP2)\|Tier 1\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]\|[@dunsCharacterizationDLBCLPMBL2021b]\|\|
45	45	\|[EBF1](EBF1)\|Tier 1\|[Bohle et al](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]\|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]\|\|
46	46	\|[EEF1A1](EEF1A1)\|Tier 1\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]\|[@reichelFlowSortingExome2015a]\|\|
47		-\|[EP300](EP300)\|Tier 1; EE; CE\|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]\|[@rossiCodingGenomeSplenic2012c]\|\|
	47	+\|[EP300](EP300)\|Tier 1, EE, CE\|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]\|[@rossiCodingGenomeSplenic2012c]\|\|
48	48	\|[ETS1](ETS1)\|Tier 1\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@paneaWholeGenomeLandscape2019]\|\|
49	49	\|[ETV6](ETV6)\|Tier 1\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]\|\|\|
50		-\|[EZH2](EZH2)\|Tier 1; EE; CE\|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]\|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]\|\|
	50	+\|[EZH2](EZH2)\|Tier 1, EE, CE\|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]\|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]\|\|
51	51	\|[FAS](FAS)\|Tier 1\|[Scholl et al](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]\|[@spinaGeneticsNodalMarginal2016b]\|\|
52	52	\|[FBXO11](FBXO11)\|Tier 1\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]\|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]\|\|
53	53	\|[FBXW7](FBXW7)\|Tier 1\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|\|\|
...	...	@@ -87,7 +87,7 @@ link-citations: true
87	87	\|[LCOR](LCOR)\|Tier 1\|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]\|\|\|
88	88	\|[LRRN3](LRRN3)\|Tier 1\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|[@sarkozyMutationalLandscapeGray2021a]\|\|
89	89	\|[LTB](LTB)\|Tier 1\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]\|[@deschGenotypingCirculatingTumor2020]\|\|
90		-\|[MEF2B](MEF2B)\|Tier 1; EE; CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@beaLandscapeSomaticMutations2013]\|\|
	90	+\|[MEF2B](MEF2B)\|Tier 1, EE, CE\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@beaLandscapeSomaticMutations2013]\|\|
91	91	\|[MEF2C](MEF2C)\|Tier 1\|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]\|\|\|
92	92	\|[MGA](MGA)\|Tier 1\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@jalladesExomeSequencingIdentifies2017]\|\|
93	93	\|[MPEG1](MPEG1)\|Tier 1\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|\|\|
...	...	@@ -118,7 +118,7 @@ link-citations: true
118	118	\|[SF3B1](SF3B1)\|Tier 1\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@loveGeneticLandscapeMutations2012]\|\|
119	119	\|[SGK1](SGK1)\|Tier 1\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@dunsCharacterizationDLBCLPMBL2021b]\|\|
120	120	\|[SIN3A](SIN3A)\|Tier 1\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]\|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]\|\|
121		-\|[SMARCA4](SMARCA4)\|Tier 1; EE; CE\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]\|\|
	121	+\|[SMARCA4](SMARCA4)\|Tier 1, EE, CE\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]\|\|
122	122	\|[SOCS1](SOCS1)\|Tier 1\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]\|[@wenigerMutationsTumorSuppressor2006a]\|\|
123	123	\|[SPEN](SPEN)\|Tier 1\|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]\|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]\|\|
124	124	\|[STAT3](STAT3)\|Tier 1\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]\|\|\|
...	...	@@ -144,7 +144,7 @@ link-citations: true
144	144
145	145	### 181 total
146	146
147		-\|Gene\|Tier\| First DLBCL study \| Other entities \| QC result \|
	147	+\|Gene\|Summary\| First DLBCL study \| Other entities \| QC result \|
148	148	\|:-:\|:-:\|:-:\|:-\|:-\|
149	149	\|[ABI3BP](ABI3BP)\|Tier 2\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|\|PASS\|
150	150	\|[ADAMTS1](ADAMTS1)\|Tier 2\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]\|\|PASS\|
...	...	@@ -209,7 +209,7 @@ link-citations: true
209	209	\|[HLA-DMA](HLA-DMA)\|Tier 2\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]\|\|\|
210	210	\|[HNF1B](HNF1B)\|Tier 2\|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]\|\|\|
211	211	\|[HNRNPD](HNRNPD)\|Tier 2\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]\|\|\|
212		-\|[HNRNPH1](HNRNPH1)\|Tier 2; EE; CE\|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]\|\|\|
	212	+\|[HNRNPH1](HNRNPH1)\|Tier 2, EE, CE\|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]\|\|\|
213	213	\|[ID3](ID3)\|Tier 2\|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]\|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]\|\|
214	214	\|[IFNGR1](IFNGR1)\|Tier 2\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]\|\|PASS\|
215	215	\|[IGLL5](IGLL5)\|Tier 2\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]\|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]\|\|
...	...	@@ -332,7 +332,7 @@ link-citations: true
332	332
333	333	### 386 total
334	334
335		-\|Gene\|Tier\| First DLBCL study \| Other entities \| QC result \|
	335	+\|Gene\|Summary\| First DLBCL study \| Other entities \| QC result \|
336	336	\|:-:\|:-:\|:-:\|:-\|:-\|
337	337	\|[ABCA3](ABCA3)\|Tier 3\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|[@beaLandscapeSomaticMutations2013]\|\|
338	338	\|[ABCA4](ABCA4)\|Tier 3\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]\|\|\|