da19f1813576641b971b70f387b87bc0bc6f0a60
MCL_genes.md
| ... | ... | @@ -11,33 +11,8 @@ link-citations: true |
| 11 | 11 | |
| 12 | 12 | ## Tier 1, high-confidence MCL genes |
| 13 | 13 | |
| 14 | -### *23 total* |
|
| 14 | +[[include:pages/MCL_Tier1.md]] |
|
| 15 | 15 | |
| 16 | -|Gene|Status| First MCL study | Other lists | |
|
| 17 | -|:-:|:-:|:---:|:----| |
|
| 18 | -|[ATM](ATM)|MCL Tier 1|[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL, MZL| |
|
| 19 | -|[BIRC3](BIRC3)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL, MZL, PMBL| |
|
| 20 | -|[CARD11](CARD11)|MCL Tier 1 |[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)|DLBCL, MZL, FL, BL| |
|
| 21 | -|[CCND1](CCND1)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|| |
|
| 22 | -|[DAZAP1](DAZAP1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 23 | -|[EWSR1](EWSR1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|PMBL| |
|
| 24 | -|[HNRNPH1](HNRNPH1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 25 | -|[KMT2D](KMT2D)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|FL, BL, DLBCL, PMBL, MZL| |
|
| 26 | -|[MEF2B](MEF2B)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|FL, DLBCL| |
|
| 27 | -|[NFKBIE](NFKBIE)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL, PMBL| |
|
| 28 | -|[NOTCH1](NOTCH1)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|MZL, DLBCL, BL| |
|
| 29 | -|[NOTCH2](NOTCH2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|MZL, DLBCL| |
|
| 30 | -|[NSD2](NSD2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL| |
|
| 31 | -|[POT1](POT1)|MCL Tier 1 |[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|| |
|
| 32 | -|[RB1](RB1)|MCL Tier 1 |[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|DLBCL| |
|
| 33 | -|[S1PR1](S1PR1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 34 | -|[SMARCA4](SMARCA4)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|DLBCL, BL, FL, PMBL| |
|
| 35 | -|[SP140](SP140)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|| |
|
| 36 | -|[SYNE1](SYNE1)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|| |
|
| 37 | -|[TERT](TERT)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|| |
|
| 38 | -|[TLR2](TLR2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL| |
|
| 39 | -|[TP53](TP53)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]| |
|
| 40 | -|[UBR5](UBR5)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 41 | 16 | |
| 42 | 17 | ## Tier 2, low-confidence MCL genes |
| 43 | 18 |
pages/MCL_Tier1.md
| ... | ... | @@ -0,0 +1,27 @@ |
| 1 | + |
|
| 2 | + |
|
| 3 | +|Gene|Status| First MCL study | Other lists | |
|
| 4 | +|:-:|:-:|:---:|:----| |
|
| 5 | +|[ATM](ATM)|MCL Tier 1|[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL, MZL| |
|
| 6 | +|[BIRC3](BIRC3)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL, MZL, PMBL| |
|
| 7 | +|[CARD11](CARD11)|MCL Tier 1 |[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)|DLBCL, MZL, FL, BL| |
|
| 8 | +|[CCND1](CCND1)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|| |
|
| 9 | +|[DAZAP1](DAZAP1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 10 | +|[EWSR1](EWSR1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|PMBL| |
|
| 11 | +|[HNRNPH1](HNRNPH1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 12 | +|[KMT2D](KMT2D)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|FL, BL, DLBCL, PMBL, MZL| |
|
| 13 | +|[MEF2B](MEF2B)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|FL, DLBCL| |
|
| 14 | +|[NFKBIE](NFKBIE)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL, PMBL| |
|
| 15 | +|[NOTCH1](NOTCH1)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|MZL, DLBCL, BL| |
|
| 16 | +|[NOTCH2](NOTCH2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|MZL, DLBCL| |
|
| 17 | +|[NSD2](NSD2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL| |
|
| 18 | +|[POT1](POT1)|MCL Tier 1 |[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|| |
|
| 19 | +|[RB1](RB1)|MCL Tier 1 |[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|DLBCL| |
|
| 20 | +|[S1PR1](S1PR1)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |
|
| 21 | +|[SMARCA4](SMARCA4)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|DLBCL, BL, FL, PMBL| |
|
| 22 | +|[SP140](SP140)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|| |
|
| 23 | +|[SYNE1](SYNE1)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|| |
|
| 24 | +|[TERT](TERT)|MCL Tier 1 |[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020)|| |
|
| 25 | +|[TLR2](TLR2)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|DLBCL| |
|
| 26 | +|[TP53](TP53)|MCL Tier 1 |[Bea et al](papers/beaLandscapeSomaticMutations2013)|PMBL, DLBCL, FL, BL, MZL| |
|
| 27 | +|[UBR5](UBR5)|MCL Tier 1 |[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|DLBCL| |