BL_genes.md
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@@ -15,197 +15,194 @@ link-citations: true
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|Gene|Tier| First BL evidence | Other entities |
17 17
|:-:|:-:|:-|:-|
18
-|[ARID1A](ARID1A)|1|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c]|
19
-|[BCL7A](BCL7A)|1, aSHM|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]|
20
-|[BMP7](BMP7)|1|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
21
-|[CCND3](CCND3)|1|[Study Page](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017]|
22
-|[CHD8](CHD8)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]|
23
-|[DDX3X](DDX3X)|1|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
24
-|[EIF4A1](EIF4A1)|1|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
25
-|[EPPK1](EPPK1)|1|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
26
-|[FBXO11](FBXO11)|1|[Study Page](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b]|
27
-|[FOXO1](FOXO1)|1|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|
28
-|[GNA13](GNA13)|1|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|
29
-|[GNAI2](GNAI2)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]|
30
-|[HNRNPU](HNRNPU)|1, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]|
31
-|[ID3](ID3)|1|[Study Page](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
32
-|[KMT2D](KMT2D)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|
33
-|[MYC](MYC)|1, aSHM|[Study Page](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b]|
34
-|[P2RY8](P2RY8)|1|[Study Page](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
35
-|[PHF6](PHF6)|1|[Study Page](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]|
36
-|[PTEN](PTEN)|1|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
37
-|[RFX7](RFX7)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
38
-|[RHOA](RHOA)|1|[Study Page](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]||
39
-|[SIN3A](SIN3A)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c]|
40
-|[SMARCA4](SMARCA4)|1|[Study Page](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b]|
41
-|[TCF3](TCF3)|1|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
42
-|[TCL1A](TCL1A)|1, aSHM|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
43
-|[TFAP4](TFAP4)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
44
-|[TP53](TP53)|1|[Study Page](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@lohrDiscoveryPrioritizationSomatic2012a; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c]|
45
-|[USP7](USP7)|1|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
46
-|[WNK1](WNK1)|1|[Study Page](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@jalladesExomeSequencingIdentifies2017; @hubschmannMutationalMechanismsShaping2021b]|
18
+|[ARID1A](ARID1A)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b]|
19
+|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a]|
20
+|[BMP7](BMP7)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
21
+|[CCND3](CCND3)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]|
22
+|[CHD8](CHD8)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]|
23
+|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
24
+|[EIF4A1](EIF4A1)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
25
+|[EPPK1](EPPK1)|1|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
26
+|[FBXO11](FBXO11)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b]|
27
+|[FOXO1](FOXO1)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]|
28
+|[GNA13](GNA13)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]|
29
+|[GNAI2](GNAI2)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]|
30
+|[HNRNPU](HNRNPU)|1, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]|
31
+|[ID3](ID3)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
32
+|[KMT2D](KMT2D)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
33
+|[MYC](MYC)|1, aSHM|[Study Overview](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
34
+|[P2RY8](P2RY8)|1|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
35
+|[PHF6](PHF6)|1|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]|
36
+|[PTEN](PTEN)|1|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
37
+|[RFX7](RFX7)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
38
+|[RHOA](RHOA)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]||
39
+|[SIN3A](SIN3A)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c]|
40
+|[SMARCA4](SMARCA4)|1|[Study Overview](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b]|
41
+|[TCF3](TCF3)|1|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
42
+|[TCL1A](TCL1A)|1, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
43
+|[TFAP4](TFAP4)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
44
+|[TP53](TP53)|1|[Study Overview](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@lohrDiscoveryPrioritizationSomatic2012a; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|
45
+|[USP7](USP7)|1|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
46
+|[WNK1](WNK1)|1|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@jalladesExomeSequencingIdentifies2017; @hubschmannMutationalMechanismsShaping2021b]|
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## Tier 2 BL genes
49 49
50
-### *155 total*
50
+### *152 total*
51 51
52 52
|Gene|Tier| First BL evidence | Other entities |
53 53
|:-:|:-:|:-|:-|
54
-|[ACAD9](ACAD9)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
55
-|[ACE](ACE)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
56
-|[ADAMTS5](ADAMTS5)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
57
-|[ADNP](ADNP)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
58
-|[AGO4](AGO4)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
59
-|[ALPK2](ALPK2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
60
-|[ARHGEF1](ARHGEF1)|2|[Study Page](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]||
61
-|[ATP2C2](ATP2C2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
62
-|[BACH2](BACH2)|2, aSHM|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
63
-|[BCL2](BCL2)|2, aSHM|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|
64
-|[BCL6](BCL6)|2, aSHM|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]|
65
-|[BRAF](BRAF)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]|
66
-|[BRD4](BRD4)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
67
-|[BTG1](BTG1)|2, aSHM|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|
68
-|[BTG2](BTG2)|2, aSHM|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]|
69
-|[C16orf48](C16orf48)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
70
-|[C6orf27](C6orf27)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
71
-|[CAD](CAD)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
72
-|[CARD11](CARD11)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016]|
73
-|[CARD4](CARD4)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
74
-|[CCNF](CCNF)|2|[Study Page](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]||
75
-|[CCT6B](CCT6B)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
76
-|[CD79A](CD79A)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]|
77
-|[CD79B](CD79B)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
78
-|[CD83](CD83)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b]|
79
-|[CDC73](CDC73)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]|
80
-|[CDH17](CDH17)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
81
-|[CDKN2A](CDKN2A)|2|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|
82
-|[CDKN2C](CDKN2C)|2|[Study Page](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]||
83
-|[CHD4](CHD4)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
84
-|[COL4A2](COL4A2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
85
-|[CPXM2](CPXM2)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
86
-|[CREBBP](CREBBP)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
87
-|[CTCF](CTCF)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
88
-|[CXCR4](CXCR4)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]|
89
-|[CYB5D1](CYB5D1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
90
-|[CYP4F22](CYP4F22)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
91
-|[DHCR7](DHCR7)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
92
-|[DLGAP1](DLGAP1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
93
-|[DNMT1](DNMT1)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
94
-|[DTX1](DTX1)|2, aSHM|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]|
95
-|[E2F2](E2F2)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
96
-|[EBF1](EBF1)|2, aSHM|[Study Page](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]|
97
-|[EDNRB](EDNRB)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
98
-|[EHD1](EHD1)|2|[Study Page](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]||
99
-|[EIF2C4](EIF2C4)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
100
-|[ELP2](ELP2)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
101
-|[EML2](EML2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
102
-|[ENTPD3](ENTPD3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
103
-|[EP300](EP300)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
104
-|[EPHB2](EPHB2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
105
-|[ERAP1](ERAP1)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
106
-|[ETS1](ETS1)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
107
-|[EXOSC6](EXOSC6)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
108
-|[EZH2](EZH2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a]|
109
-|[FAM129B](FAM129B)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
110
-|[FGFR3](FGFR3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
111
-|[FLYWCH1](FLYWCH1)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
112
-|[FTCD](FTCD)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
113
-|[FZD3](FZD3)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
114
-|[GGTLA4](GGTLA4)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
115
-|[GRB2](GRB2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@pasqualucciAnalysisCodingGenome2011]|
116
-|[GRIK5](GRIK5)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
117
-|[GTSE1](GTSE1)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
118
-|[HIST1H1C](HIST1H1C)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
119
-|[HIST1H1E](HIST1H1E)|2, aSHM|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]|
120
-|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
121
-|[HIST1H2AM](HIST1H2AM)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]|
122
-|[HIST1H2BK](HIST1H2BK)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]|
123
-|[HIST1H3D](HIST1H3D)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
124
-|[HIST1H3H](HIST1H3H)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
125
-|[HIST1H3I](HIST1H3I)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]|
126
-|[HIST1H3J](HIST1H3J)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
127
-|[HIST1H4J](HIST1H4J)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]|
128
-|[HLA-A](HLA-A)|2||[@lohrDiscoveryPrioritizationSomatic2012a; @deschGenotypingCirculatingTumor2020]|
129
-|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]|
130
-|[HLA-DMB](HLA-DMB)|2|||
131
-|[HLA-DQB1](HLA-DQB1)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
132
-|[ICK](ICK)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
133
-|[IGLL5](IGLL5)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]|
134
-|[IKZF3](IKZF3)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]|
135
-|[IRF8](IRF8)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
136
-|[ITPR3](ITPR3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
137
-|[KANK2](KANK2)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
138
-|[KCNK10](KCNK10)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
139
-|[KIFC3](KIFC3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
140
-|[KLHL26](KLHL26)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
141
-|[KLHL6](KLHL6)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @ganapathiGeneticLandscapeDural2016]|
142
-|[KMT2C](KMT2C)|2|[Study Page](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|
143
-|[LTB](LTB)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]|
144
-|[MAP3K6](MAP3K6)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
145
-|[MCL1](MCL1)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]|
146
-|[MIR142](MIR142)|2, aSHM|[Study Page](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]|
147
-|[MKI67](MKI67)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]|
148
-|[MME](MME)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
149
-|[MTOR](MTOR)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]|
150
-|[MYH10](MYH10)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
151
-|[MYO18A](MYO18A)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
152
-|[NBEAL1](NBEAL1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
153
-|[NCOR2](NCOR2)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]|
154
-|[NOA1](NOA1)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
155
-|[NOTCH1](NOTCH1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|
156
-|[NOTCH2](NOTCH2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@troenNOTCH2MutationsMarginal2008; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|
157
-|[NRXN2](NRXN2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
158
-|[P2RY2](P2RY2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
159
-|[PABPC4L](PABPC4L)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
160
-|[PC](PC)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
161
-|[PCBP1](PCBP1)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
162
-|[PCDHA11](PCDHA11)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
163
-|[PDCD11](PDCD11)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
164
-|[PDZRN3](PDZRN3)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
165
-|[PIK3R1](PIK3R1)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]|
166
-|[PIM1](PIM1)|2, aSHM|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]|
167
-|[PLCG2](PLCG2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
168
-|[POLRMT](POLRMT)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
169
-|[POR](POR)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
170
-|[PPP6R2](PPP6R2)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
171
-|[PREX1](PREX1)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
172
-|[PRSS22](PRSS22)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
173
-|[PTPRN](PTPRN)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
174
-|[PXDNL](PXDNL)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
175
-|[RAC2](RAC2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@hubschmannMutationalMechanismsShaping2021b]|
176
-|[RANBP6](RANBP6)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
177
-|[RBP3](RBP3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
178
-|[RET](RET)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
179
-|[REV3L](REV3L)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
180
-|[RNF144B](RNF144B)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
181
-|[RPL10](RPL10)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
182
-|[S1PR2](S1PR2)|2, aSHM|[Study Page](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@morinFrequentMutationHistonemodifying2011]|
183
-|[SAL3](SAL3)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
184
-|[SALL3](SALL3)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]|
185
-|[SAPS2](SAPS2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
186
-|[SBF1](SBF1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
187
-|[SF3B1](SF3B1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
188
-|[SHANK1](SHANK1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
189
-|[SLC29A2](SLC29A2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
190
-|[SNTB2](SNTB2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
191
-|[SYNGAP1](SYNGAP1)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
192
-|[TBC1D9B](TBC1D9B)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
193
-|[TET2](TET2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
194
-|[TIGD6](TIGD6)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
195
-|[TOP2A](TOP2A)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
196
-|[TPST2](TPST2)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
197
-|[TTN](TTN)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
198
-|[VWA7](VWA7)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
199
-|[WDR7](WDR7)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
200
-|[WDR90](WDR90)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
201
-|[WHAMM](WHAMM)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
202
-|[WNK2](WNK2)|2|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
203
-|[YY1AP1](YY1AP1)|2|[Study Page](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
204
-|[ZAN](ZAN)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
205
-|[ZBTB7A](ZBTB7A)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@reddyGeneticFunctionalDrivers2017]|
206
-|[ZFP36L1](ZFP36L1)|2, aSHM|[Study Page](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|
207
-|[ZNF229](ZNF229)|2|[Study Page](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
208
-|[ZNF85](ZNF85)|2|[Study Page](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
54
+|[ACAD9](ACAD9)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
55
+|[ACE](ACE)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
56
+|[ADAMTS5](ADAMTS5)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
57
+|[ADNP](ADNP)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
58
+|[AGO4](AGO4)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
59
+|[ALPK2](ALPK2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
60
+|[ARHGEF1](ARHGEF1)|2|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]||
61
+|[ATP2C2](ATP2C2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
62
+|[BACH2](BACH2)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]||
63
+|[BCL2](BCL2)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992]|
64
+|[BCL6](BCL6)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]|
65
+|[BRAF](BRAF)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]|
66
+|[BRD4](BRD4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
67
+|[BTG1](BTG1)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]|
68
+|[BTG2](BTG2)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]|
69
+|[C16orf48](C16orf48)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
70
+|[C6orf27](C6orf27)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
71
+|[CAD](CAD)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
72
+|[CARD11](CARD11)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|
73
+|[CARD4](CARD4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
74
+|[CCNF](CCNF)|2|[Study Overview](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]||
75
+|[CCT6B](CCT6B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
76
+|[CD79A](CD79A)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]|
77
+|[CD79B](CD79B)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
78
+|[CD83](CD83)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
79
+|[CDC73](CDC73)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]|
80
+|[CDH17](CDH17)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
81
+|[CDKN2A](CDKN2A)|2|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|
82
+|[CDKN2C](CDKN2C)|2|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]||
83
+|[CHD4](CHD4)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
84
+|[COL4A2](COL4A2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
85
+|[CPXM2](CPXM2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
86
+|[CREBBP](CREBBP)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
87
+|[CTCF](CTCF)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
88
+|[CXCR4](CXCR4)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]|
89
+|[CYB5D1](CYB5D1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
90
+|[CYP4F22](CYP4F22)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
91
+|[DHCR7](DHCR7)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
92
+|[DLGAP1](DLGAP1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
93
+|[DNMT1](DNMT1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
94
+|[DTX1](DTX1)|2, aSHM|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]|
95
+|[E2F2](E2F2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
96
+|[EBF1](EBF1)|2, aSHM|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013]|
97
+|[EDNRB](EDNRB)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
98
+|[EHD1](EHD1)|2|[Study Overview](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]||
99
+|[EIF2C4](EIF2C4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
100
+|[ELP2](ELP2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
101
+|[EML2](EML2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
102
+|[ENTPD3](ENTPD3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
103
+|[EP300](EP300)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
104
+|[EPHB2](EPHB2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
105
+|[ERAP1](ERAP1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
106
+|[ETS1](ETS1)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
107
+|[EXOSC6](EXOSC6)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
108
+|[EZH2](EZH2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]|
109
+|[FAM129B](FAM129B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
110
+|[FGFR3](FGFR3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
111
+|[FLYWCH1](FLYWCH1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
112
+|[FTCD](FTCD)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
113
+|[FZD3](FZD3)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
114
+|[GGTLA4](GGTLA4)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
115
+|[GRB2](GRB2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@pasqualucciAnalysisCodingGenome2011]|
116
+|[GRIK5](GRIK5)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
117
+|[GTSE1](GTSE1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
118
+|[HIST1H1C](HIST1H1C)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]|
119
+|[HIST1H1E](HIST1H1E)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]|
120
+|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]|
121
+|[HIST1H2AM](HIST1H2AM)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]|
122
+|[HIST1H2BK](HIST1H2BK)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]|
123
+|[HIST1H3D](HIST1H3D)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
124
+|[HIST1H3H](HIST1H3H)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
125
+|[HIST1H3I](HIST1H3I)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]|
126
+|[HIST1H3J](HIST1H3J)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
127
+|[HIST1H4J](HIST1H4J)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]|
128
+|[HLA-DQB1](HLA-DQB1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
129
+|[ICK](ICK)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
130
+|[IGLL5](IGLL5)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]|
131
+|[IKZF3](IKZF3)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]|
132
+|[IRF8](IRF8)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
133
+|[ITPR3](ITPR3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
134
+|[KANK2](KANK2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
135
+|[KCNK10](KCNK10)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
136
+|[KIFC3](KIFC3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
137
+|[KLHL26](KLHL26)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
138
+|[KLHL6](KLHL6)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@ganapathiGeneticLandscapeDural2016; @morinFrequentMutationHistonemodifying2011]|
139
+|[KMT2C](KMT2C)|2|[Study Overview](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|
140
+|[LTB](LTB)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|
141
+|[MAP3K6](MAP3K6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
142
+|[MCL1](MCL1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]|
143
+|[MIR142](MIR142)|2, aSHM|[Study Overview](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]|
144
+|[MKI67](MKI67)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]|
145
+|[MME](MME)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
146
+|[MTOR](MTOR)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]|
147
+|[MYH10](MYH10)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
148
+|[MYO18A](MYO18A)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
149
+|[NBEAL1](NBEAL1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
150
+|[NCOR2](NCOR2)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]|
151
+|[NOA1](NOA1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
152
+|[NOTCH1](NOTCH1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|
153
+|[NOTCH2](NOTCH2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]|
154
+|[NRXN2](NRXN2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
155
+|[P2RY2](P2RY2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
156
+|[PABPC4L](PABPC4L)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
157
+|[PC](PC)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
158
+|[PCBP1](PCBP1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
159
+|[PCDHA11](PCDHA11)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
160
+|[PDCD11](PDCD11)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
161
+|[PDZRN3](PDZRN3)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
162
+|[PIK3R1](PIK3R1)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]|
163
+|[PIM1](PIM1)|2, aSHM|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
164
+|[PLCG2](PLCG2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
165
+|[POLRMT](POLRMT)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
166
+|[POR](POR)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
167
+|[PPP6R2](PPP6R2)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
168
+|[PREX1](PREX1)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
169
+|[PRSS22](PRSS22)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
170
+|[PTPRN](PTPRN)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
171
+|[PXDNL](PXDNL)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
172
+|[RAC2](RAC2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@hubschmannMutationalMechanismsShaping2021b]|
173
+|[RANBP6](RANBP6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
174
+|[RBP3](RBP3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
175
+|[RET](RET)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
176
+|[REV3L](REV3L)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
177
+|[RNF144B](RNF144B)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
178
+|[RPL10](RPL10)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
179
+|[S1PR2](S1PR2)|2, aSHM|[Study Overview](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@morinFrequentMutationHistonemodifying2011]|
180
+|[SAL3](SAL3)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
181
+|[SALL3](SALL3)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]|
182
+|[SAPS2](SAPS2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
183
+|[SBF1](SBF1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
184
+|[SF3B1](SF3B1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
185
+|[SHANK1](SHANK1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
186
+|[SLC29A2](SLC29A2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
187
+|[SNTB2](SNTB2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
188
+|[SYNGAP1](SYNGAP1)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
189
+|[TBC1D9B](TBC1D9B)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
190
+|[TET2](TET2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
191
+|[TIGD6](TIGD6)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
192
+|[TOP2A](TOP2A)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
193
+|[TPST2](TPST2)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
194
+|[TTN](TTN)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
195
+|[VWA7](VWA7)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
196
+|[WDR7](WDR7)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
197
+|[WDR90](WDR90)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
198
+|[WHAMM](WHAMM)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
199
+|[WNK2](WNK2)|2|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]||
200
+|[YY1AP1](YY1AP1)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]||
201
+|[ZAN](ZAN)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
202
+|[ZBTB7A](ZBTB7A)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@reddyGeneticFunctionalDrivers2017]|
203
+|[ZFP36L1](ZFP36L1)|2, aSHM|[Study Overview](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|
204
+|[ZNF229](ZNF229)|2|[Study Overview](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]||
205
+|[ZNF85](ZNF85)|2|[Study Overview](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]||
209 206
210 207
211 208
# References
DLBCL_genes.md
... ...
@@ -11,340 +11,358 @@ link-citations: true
11 11
12 12
## Tier 1 DLBCL genes
13 13
14
-### *129 total*
14
+### *127 total*
15 15
16 16
|Gene|Tier| First DLBCL evidence | Other entities |
17 17
|:-:|:-:|:-|:-|
18
-|[ACTB](ACTB)|1, aSHM|[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ACTG1](ACTG1)|1, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|
20
-|[ARID1A](ARID1A)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b]|
21
-|[ATM](ATM)|1|[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]|
22
-|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|
23
-|[BCL10](BCL10)|1|[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]|
24
-|[BCL2](BCL2)|1, aSHM|[@tanakaFrequentIncidenceSomatic1992]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]|
25
-|[BCL6](BCL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
26
-|[BCL7A](BCL7A)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]|
27
-|[BIRC6](BIRC6)|1|[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]|
28
-|[BRAF](BRAF)|1|[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]|
29
-|[BTG1](BTG1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b]|
30
-|[BTG2](BTG2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
31
-|[BTK](BTK)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]|
32
-|[CARD11](CARD11)|1|[@lenzOncogenicCARD11Mutations2008]|[@yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
33
-|[CASP8](CASP8)|2|[@reddyGeneticFunctionalDrivers2017]||
34
-|[CCND3](CCND3)|1|[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|
35
-|[CD58](CD58)|1|[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]|
36
-|[CD70](CD70)|1|[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]|
37
-|[CD79B](CD79B)|1|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
38
-|[CD83](CD83)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
39
-|[CDKN2A](CDKN2A)|1|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]|
40
-|[CIITA](CIITA)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]|
41
-|[CREBBP](CREBBP)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]|
42
-|[CXCR4](CXCR4)|1, aSHM|[@khodabakhshiRecurrentTargetsAberrant2012]|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
43
-|[CXCR5](CXCR5)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]|
44
-|[DDX3X](DDX3X)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]|
45
-|[DTX1](DTX1)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023]|
46
-|[DUSP2](DUSP2)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b]|
47
-|[EBF1](EBF1)|1, aSHM|[@bohleRoleEarlyBcell2013]|[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a]|
48
-|[EEF1A1](EEF1A1)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
49
-|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
50
-|[ETS1](ETS1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
51
-|[ETV6](ETV6)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
52
-|[EZH2](EZH2)|1|[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|
53
-|[FAS](FAS)|1|[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]|
54
-|[FBXO11](FBXO11)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]|
55
-|[FBXW7](FBXW7)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
56
-|[FOXO1](FOXO1)|1|[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]|
57
-|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
58
-|[GNAI2](GNAI2)|1|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]|
59
-|[GRB2](GRB2)|1|[@pasqualucciAnalysisCodingGenome2011]|[@paneaWholeGenomeLandscape2019]|
60
-|[GRHPR](GRHPR)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
61
-|[HIST1H1B](HIST1H1B)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b]|[@sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]|
62
-|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
63
-|[HIST1H1D](HIST1H1D)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]|
64
-|[HIST1H1E](HIST1H1E)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|
65
-|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]|
18
+|[ACTB](ACTB)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]|
19
+|[ACTG1](ACTG1)|1, aSHM|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|
20
+|[ARID1A](ARID1A)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
21
+|[ATM](ATM)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]|
22
+|[B2M](B2M)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]|
23
+|[BCL10](BCL10)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]|
24
+|[BCL2](BCL2)|1, aSHM|[Study Overview](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]|
25
+|[BCL6](BCL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
26
+|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]|
27
+|[BIRC6](BIRC6)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]|
28
+|[BRAF](BRAF)|1|[Study Overview](papers/tiacciBRAFMutationsHairycell2011a)[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]|
29
+|[BTG1](BTG1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|
30
+|[BTG2](BTG2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
31
+|[BTK](BTK)|1|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]|
32
+|[CARD11](CARD11)|1|[Study Overview](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a; @paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
33
+|[CCND3](CCND3)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017]|
34
+|[CD58](CD58)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]|
35
+|[CD70](CD70)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]|
36
+|[CD79B](CD79B)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
37
+|[CD83](CD83)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|
38
+|[CDKN2A](CDKN2A)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019]|
39
+|[CREBBP](CREBBP)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013]|
40
+|[CXCR4](CXCR4)|1, aSHM|[Study Overview](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|
41
+|[CXCR5](CXCR5)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]|
42
+|[DDX3X](DDX3X)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]|
43
+|[DTX1](DTX1)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @gomezUltraDeepSequencingReveals2023]|
44
+|[DUSP2](DUSP2)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@dunsCharacterizationDLBCLPMBL2021b]|
45
+|[EBF1](EBF1)|1, aSHM|[Study Overview](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|
46
+|[EEF1A1](EEF1A1)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
47
+|[EP300](EP300)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
48
+|[ETS1](ETS1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
49
+|[ETV6](ETV6)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
50
+|[EZH2](EZH2)|1|[Study Overview](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|
51
+|[FAS](FAS)|1|[Study Overview](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]|
52
+|[FBXO11](FBXO11)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]|
53
+|[FBXW7](FBXW7)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
54
+|[FOXO1](FOXO1)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]|
55
+|[GNA13](GNA13)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|
56
+|[GNAI2](GNAI2)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]|
57
+|[GRB2](GRB2)|1|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@paneaWholeGenomeLandscape2019]|
58
+|[GRHPR](GRHPR)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
59
+|[HIST1H1B](HIST1H1B)|1, aSHM|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@krysiakRecurrentSomaticMutations2017b; @sarkozyMutationalLandscapeGray2021a]|
60
+|[HIST1H1C](HIST1H1C)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
61
+|[HIST1H1D](HIST1H1D)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]|
62
+|[HIST1H1E](HIST1H1E)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019]|
63
+|[HIST1H2AC](HIST1H2AC)|1, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]|
66 64
|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
67
-|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@reddyGeneticFunctionalDrivers2017]|[@krysiakRecurrentSomaticMutations2017b; @mottokIntegrativeGenomicAnalysis2019b]|
68
-|[HIST1H2BK](HIST1H2BK)|1, aSHM||[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
69
-|[HIST1H3B](HIST1H3B)|1, aSHM|[@zhangGeneticHeterogeneityDiffuse2013]|[@reichelFlowSortingExome2015a]|
70
-|[HIST2H2BE](HIST2H2BE)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]||
71
-|[HLA-A](HLA-A)|1||[@deschGenotypingCirculatingTumor2020]|
72
-|[HLA-B](HLA-B)|1||[@wienandGenomicAnalysesFlowsorted2019b]|
65
+|[HIST1H2BC](HIST1H2BC)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b; @mottokIntegrativeGenomicAnalysis2019b]|
66
+|[HIST1H2BK](HIST1H2BK)|1, aSHM||[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
67
+|[HIST1H3B](HIST1H3B)|1, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]|
68
+|[HIST2H2BE](HIST2H2BE)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
69
+|[HLA-A](HLA-A)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@deschGenotypingCirculatingTumor2020]|
70
+|[HLA-B](HLA-B)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]|
73 71
|[HLA-C](HLA-C)|1||[@gomezUltraDeepSequencingReveals2023]|
74 72
|[HLA-DMB](HLA-DMB)|1|||
75
-|[HNRNPU](HNRNPU)|1, aSHM|[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019]|
73
+|[HNRNPU](HNRNPU)|1, aSHM|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019]|
76 74
|[HVCN1](HVCN1)|1||[@krysiakRecurrentSomaticMutations2017b]|
77
-|[IKZF3](IKZF3)|1|[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]|
78
-|[IL4R](IL4R)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]|
79
-|[IRF4](IRF4)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]|
80
-|[IRF8](IRF8)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]|
81
-|[ITPKB](ITPKB)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
82
-|[KLF2](KLF2)|1, aSHM|[@pasqualucciAnalysisCodingGenome2011]|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]|
83
-|[KLHL14](KLHL14)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
84
-|[KLHL6](KLHL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]|
85
-|[KMT2C](KMT2C)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a; @zhouSporadicEndemicBurkitt2019; @zhangGenomicLandscapeMantle2014]|
86
-|[KMT2D](KMT2D)|1|[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020]|
87
-|[KRAS](KRAS)|1|[@lohrDiscoveryPrioritizationSomatic2012a]||
88
-|[LCOR](LCOR)|1|[@arthurGenomewideDiscoverySomatic2018]||
89
-|[LTB](LTB)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]|
90
-|[MEF2B](MEF2B)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
91
-|[MEF2C](MEF2C)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
92
-|[MGA](MGA)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@jalladesExomeSequencingIdentifies2017]|
93
-|[MPEG1](MPEG1)|1|[@morinMutationalStructuralAnalysis2013]||
94
-|[MS4A1](MS4A1)|1, aSHM|[@rushtonGeneticEvolutionaryPatterns2020]|[@mottokIntegrativeGenomicAnalysis2019b]|
95
-|[MTOR](MTOR)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
96
-|[MYC](MYC)|1, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b]|
97
-|[MYD88](MYD88)|1|[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]|
98
-|[NFKBIA](NFKBIA)|1|[@lakeMutationsNFKBIAEncoding2009]|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]|
99
-|[NFKBIE](NFKBIE)|1|[@morinGeneticLandscapesRelapsed2016]|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016]|
100
-|[NFKBIZ](NFKBIZ)|1, noncoding|[@morinGeneticLandscapesRelapsed2016]||
101
-|[NOL9](NOL9)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]|
102
-|[NOTCH1](NOTCH1)|1|[@pasqualucciAnalysisCodingGenome2011]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
103
-|[NOTCH2](NOTCH2)|1|[@troenNOTCH2MutationsMarginal2008]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @paneaWholeGenomeLandscape2019]|
104
-|[OSBPL10](OSBPL10)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
105
-|[P2RY8](P2RY8)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]|
106
-|[PIM1](PIM1)|1, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]|
107
-|[PIM2](PIM2)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]|
75
+|[IKZF3](IKZF3)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]|
76
+|[IL4R](IL4R)|1, aSHM|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]|
77
+|[IRF4](IRF4)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]|
78
+|[IRF8](IRF8)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|
79
+|[ITPKB](ITPKB)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
80
+|[KLF2](KLF2)|1, aSHM|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]|
81
+|[KLHL14](KLHL14)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
82
+|[KLHL6](KLHL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]|
83
+|[KMT2C](KMT2C)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|
84
+|[KMT2D](KMT2D)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]|
85
+|[KRAS](KRAS)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
86
+|[LCOR](LCOR)|1|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
87
+|[LTB](LTB)|1, aSHM|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
88
+|[MEF2B](MEF2B)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
89
+|[MEF2C](MEF2C)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
90
+|[MGA](MGA)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@jalladesExomeSequencingIdentifies2017]|
91
+|[MPEG1](MPEG1)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
92
+|[MS4A1](MS4A1)|1, aSHM|[Study Overview](papers/rushtonGeneticEvolutionaryPatterns2020)[@rushtonGeneticEvolutionaryPatterns2020]|[@mottokIntegrativeGenomicAnalysis2019b]|
93
+|[MTOR](MTOR)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
94
+|[MYC](MYC)|1, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]|
95
+|[MYD88](MYD88)|1|[Study Overview](papers/ngoOncogenicallyActiveMYD882011a)[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]|
96
+|[NFKBIA](NFKBIA)|1|[Study Overview](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@wienandGenomicAnalysesFlowsorted2019b; @russler-germainMutationsAssociatedProgression2023b]|
97
+|[NFKBIE](NFKBIE)|1|[Study Overview](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016]|
98
+|[NFKBIZ](NFKBIZ)|1, noncoding|[Study Overview](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]||
99
+|[NOL9](NOL9)|1, aSHM|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]|
100
+|[NOTCH1](NOTCH1)|1|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
101
+|[NOTCH2](NOTCH2)|1|[Study Overview](papers/troenNOTCH2MutationsMarginal2008)[@troenNOTCH2MutationsMarginal2008]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
102
+|[OSBPL10](OSBPL10)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
103
+|[P2RY8](P2RY8)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]|
104
+|[PIM1](PIM1)|1, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b]|
105
+|[PIM2](PIM2)|1, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]|
108 106
|[POU2AF1](POU2AF1)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b]|
109
-|[POU2F2](POU2F2)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]|
110
-|[PRDM1](PRDM1)|1|[@pasqualucciInactivationPRDM1BLIMP12006a]||
107
+|[POU2F2](POU2F2)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b]|
108
+|[PRDM1](PRDM1)|1|[Study Overview](papers/pasqualucciInactivationPRDM1BLIMP12006a)[@pasqualucciInactivationPRDM1BLIMP12006a]||
111 109
|[PTEN](PTEN)|1||[@loveGeneticLandscapeMutations2012]|
112 110
|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
113
-|[RB1](RB1)|1|[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014]|
111
+|[RB1](RB1)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014]|
114 112
|[RFX7](RFX7)|1||[@grandeGenomewideDiscoverySomatic2019]|
115 113
|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]|
116
-|[RRAGC](RRAGC)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
117
-|[S1PR2](S1PR2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@muppidiLossSignalingGa132014b]|
118
-|[SETD1B](SETD1B)|1|[@reddyGeneticFunctionalDrivers2017]||
114
+|[RRAGC](RRAGC)|1|[Study Overview](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]||
115
+|[S1PR2](S1PR2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@muppidiLossSignalingGa132014b]|
116
+|[SETD1B](SETD1B)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
119 117
|[SF3B1](SF3B1)|1||[@loveGeneticLandscapeMutations2012]|
120
-|[SGK1](SGK1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
121
-|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|
122
-|[SMARCA4](SMARCA4)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a]|
123
-|[SOCS1](SOCS1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@wenigerMutationsTumorSuppressor2006a]|
124
-|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]|
125
-|[STAT3](STAT3)|1|[@ohgamiSTAT3MutationsAre2014]||
126
-|[STAT6](STAT6)|1|[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
127
-|[TAF1](TAF1)|1|[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b]|
128
-|[TBL1XR1](TBL1XR1)|1|[@mareschalWholeExomeSequencing2016]|[@rossiCodingGenomeSplenic2012c]|
129
-|[TET2](TET2)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@paneaWholeGenomeLandscape2019]|
130
-|[TMEM30A](TMEM30A)|1|[@morinFrequentMutationHistonemodifying2011]||
131
-|[TMSB4X](TMSB4X)|1, aSHM|[@albuquerqueEnhancingKnowledgeDiscovery2017a]||
132
-|[TNFAIP3](TNFAIP3)|1|[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]|
133
-|[TNFRSF14](TNFRSF14)|1|[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b]|
134
-|[TOX](TOX)|1|[@reddyGeneticFunctionalDrivers2017]||
135
-|[TP53](TP53)|1||[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]|
136
-|[TRRAP](TRRAP)|1|[@parryWholeExomeSequencing2013]|[@rossiCodingGenomeSplenic2012c]|
137
-|[UBE2A](UBE2A)|1|[@reddyGeneticFunctionalDrivers2017]|[@reichelFlowSortingExome2015a]|
138
-|[UNC5C](UNC5C)|1|||
118
+|[SGK1](SGK1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
119
+|[SIN3A](SIN3A)|1||[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]|
120
+|[SMARCA4](SMARCA4)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@richterRecurrentMutationID32012a; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b]|
121
+|[SOCS1](SOCS1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wenigerMutationsTumorSuppressor2006a]|
122
+|[SPEN](SPEN)|1|[Study Overview](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]|
123
+|[STAT3](STAT3)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
124
+|[STAT6](STAT6)|1|[Study Overview](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
125
+|[TAF1](TAF1)|1|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b]|
126
+|[TBL1XR1](TBL1XR1)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@rossiCodingGenomeSplenic2012c]|
127
+|[TET2](TET2)|1|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@paneaWholeGenomeLandscape2019]|
128
+|[TMEM30A](TMEM30A)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]||
129
+|[TMSB4X](TMSB4X)|1, aSHM|[Study Overview](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]||
130
+|[TNFAIP3](TNFAIP3)|1|[Study Overview](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]|
131
+|[TNFRSF14](TNFRSF14)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]|
132
+|[TOX](TOX)|1|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
133
+|[TP53](TP53)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]|
134
+|[TRRAP](TRRAP)|1|[Study Overview](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@rossiCodingGenomeSplenic2012c]|
135
+|[UBE2A](UBE2A)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]|
136
+|[UNC5C](UNC5C)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
139 137
|[USP7](USP7)|1||[@grandeGenomewideDiscoverySomatic2019]|
140
-|[VPS13B](VPS13B)|1|||
141
-|[WEE1](WEE1)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
142
-|[XPO1](XPO1)|1|[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]|
143
-|[ZC3H12A](ZC3H12A)|1|[@arthurGenomewideDiscoverySomatic2018]||
144
-|[ZFP36L1](ZFP36L1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019]|
145
-|[ZNF292](ZNF292)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
146
-|[ZNF608](ZNF608)|1, aSHM|[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]|
138
+|[VPS13B](VPS13B)|1|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
139
+|[WEE1](WEE1)|1|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
140
+|[XPO1](XPO1)|1|[Study Overview](papers/mareschalWholeExomeSequencing2016)[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]|
141
+|[ZC3H12A](ZC3H12A)|1|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
142
+|[ZFP36L1](ZFP36L1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]|
143
+|[ZNF292](ZNF292)|1|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
144
+|[ZNF608](ZNF608)|1, aSHM|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]|
147 145
148 146
## Tier 2 DLBCL genes
149 147
150
-### *194 total*
148
+### *215 total*
151 149
152 150
|Gene|Tier| First DLBCL evidence | Other entities |
153 151
|:-:|:-:|:-|:-|
154
-|[ABI3BP](ABI3BP)|2|[@morinMutationalStructuralAnalysis2013]||
155
-|[ADAMTS1](ADAMTS1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
156
-|[AICDA](AICDA)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
157
-|[ANKRD12](ANKRD12)|2|[@hubschmannMutationalMechanismsShaping2021b]||
158
-|[ANKRD17](ANKRD17)|2|[@reddyGeneticFunctionalDrivers2017]||
159
-|[ARID1B](ARID1B)|2|[@reddyGeneticFunctionalDrivers2017]||
160
-|[ARID5B](ARID5B)|2|[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]|
161
-|[ATR](ATR)|2|[@reddyGeneticFunctionalDrivers2017]||
152
+|[ABI3BP](ABI3BP)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
153
+|[ADAMTS1](ADAMTS1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
154
+|[AICDA](AICDA)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
155
+|[ANKRD12](ANKRD12)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
156
+|[ANKRD17](ANKRD17)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
157
+|[ARID1B](ARID1B)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
158
+|[ARID5B](ARID5B)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]|
159
+|[ATR](ATR)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
162 160
|[BCL11A](BCL11A)|2, aSHM|||
163 161
|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]|
164
-|[BCR](BCR)|2, aSHM|||
165
-|[BIRC3](BIRC3)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]|
162
+|[BCR](BCR)|2, aSHM|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
163
+|[BIRC3](BIRC3)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b; @beaLandscapeSomaticMutations2013]|
166 164
|[BLK](BLK)|2, aSHM|||
167
-|[BRINP3](BRINP3)|2|[@reddyGeneticFunctionalDrivers2017]||
168
-|[BTBD3](BTBD3)|2|[@reddyGeneticFunctionalDrivers2017]||
169
-|[CADPS2](CADPS2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
170
-|[CBLB](CBLB)|2|[@reddyGeneticFunctionalDrivers2017]||
171
-|[CCL4](CCL4)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
172
-|[CD22](CD22)|2|[@reddyGeneticFunctionalDrivers2017]||
173
-|[CD274](CD274)|2|[@morinFrequentMutationHistonemodifying2011]||
174
-|[CD36](CD36)|2|[@pasqualucciAnalysisCodingGenome2011]||
175
-|[CD44](CD44)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
176
-|[CD74](CD74)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
177
-|[CDC73](CDC73)|2|[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]|
178
-|[CDH9](CDH9)|2|[@morinMutationalStructuralAnalysis2013]||
179
-|[CHD1](CHD1)|2|[@reddyGeneticFunctionalDrivers2017]||
180
-|[CHD8](CHD8)|2|[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]|
181
-|[CHST2](CHST2)|2|[@reddyGeneticFunctionalDrivers2017]||
182
-|[CNOT2](CNOT2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
183
-|[CNTNAP5](CNTNAP5)|2|[@morinMutationalStructuralAnalysis2013]||
184
-|[COQ7](COQ7)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
185
-|[CRIP1](CRIP1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
186
-|[DAZAP1](DAZAP1)|2|[@pararajalingamCodingNoncodingDrivers2020]||
187
-|[DCAF6](DCAF6)|2|[@reddyGeneticFunctionalDrivers2017]||
188
-|[DDX10](DDX10)|2|[@reddyGeneticFunctionalDrivers2017]||
189
-|[DHX16](DHX16)|2|[@hubschmannMutationalMechanismsShaping2021b]||
190
-|[DICER1](DICER1)|2|[@reddyGeneticFunctionalDrivers2017]||
191
-|[DNAH5](DNAH5)|2|[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017]|
192
-|[DNM2](DNM2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
193
-|[DNMT3A](DNMT3A)|2|[@reddyGeneticFunctionalDrivers2017]||
194
-|[DOCK1](DOCK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
195
-|[DSG4](DSG4)|2|[@morinMutationalStructuralAnalysis2013]||
165
+|[BRINP3](BRINP3)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
166
+|[BTBD3](BTBD3)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
167
+|[CADPS2](CADPS2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
168
+|[CASP8](CASP8)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
169
+|[CBLB](CBLB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
170
+|[CCL4](CCL4)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
171
+|[CD22](CD22)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
172
+|[CD274](CD274)|2|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]||
173
+|[CD36](CD36)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]||
174
+|[CD44](CD44)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
175
+|[CD74](CD74)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
176
+|[CDC73](CDC73)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]|
177
+|[CDH9](CDH9)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
178
+|[CHD1](CHD1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
179
+|[CHD8](CHD8)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]|
180
+|[CHST2](CHST2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
181
+|[CIITA](CIITA)|2, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]|
182
+|[CNOT2](CNOT2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
183
+|[CNTNAP5](CNTNAP5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
184
+|[COQ7](COQ7)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
185
+|[CPS1](CPS1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
186
+|[CRIP1](CRIP1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
187
+|[DAZAP1](DAZAP1)|2|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]||
188
+|[DCAF6](DCAF6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
189
+|[DDX10](DDX10)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
190
+|[DHX16](DHX16)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
191
+|[DICER1](DICER1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
192
+|[DNAH5](DNAH5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017]|
193
+|[DNM2](DNM2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
194
+|[DNMT3A](DNMT3A)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
195
+|[DOCK1](DOCK1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
196
+|[DSG4](DSG4)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
196 197
|[EIF2AK3](EIF2AK3)|2, aSHM|||
197 198
|[EZR](EZR)|2, aSHM||[@deschGenotypingCirculatingTumor2020]|
198 199
|[FAM102A](FAM102A)|2, aSHM|||
199
-|[FAM38B](FAM38B)|2|[@morinMutationalStructuralAnalysis2013]||
200
+|[FAM38B](FAM38B)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
200 201
|[FANK1](FANK1)|2, aSHM|||
201
-|[FAT4](FAT4)|2|[@morinMutationalStructuralAnalysis2013]|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]|
202
+|[FAT4](FAT4)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014; @parryWholeExomeSequencing2013]|
202 203
|[FCRL3](FCRL3)|2, aSHM|||
203 204
|[FNBP1](FNBP1)|2, aSHM|||
204
-|[FNDC1](FNDC1)|2|[@morinMutationalStructuralAnalysis2013]||
205
-|[FOXC1](FOXC1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
206
-|[FOXP1](FOXP1)|2, aSHM|[@reddyGeneticFunctionalDrivers2017]||
207
-|[FUBP1](FUBP1)|2|[@reddyGeneticFunctionalDrivers2017]||
208
-|[FUT5](FUT5)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
209
-|[GABRA2](GABRA2)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
210
-|[GAK](GAK)|2|[@hubschmannMutationalMechanismsShaping2021b]||
211
-|[GNAS](GNAS)|2|[@reddyGeneticFunctionalDrivers2017]||
212
-|[GOLGA5](GOLGA5)|2|[@reddyGeneticFunctionalDrivers2017]||
213
-|[GPC5](GPC5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
214
-|[GSG2](GSG2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
215
-|[HDAC7](HDAC7)|2|[@morinMutationalStructuralAnalysis2013]||
216
-|[HIST1H2AG](HIST1H2AG)|2, aSHM|[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
205
+|[FNDC1](FNDC1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
206
+|[FOXC1](FOXC1)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
207
+|[FOXP1](FOXP1)|2, aSHM|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
208
+|[FUBP1](FUBP1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
209
+|[FUT5](FUT5)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
210
+|[GABRA1](GABRA1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
211
+|[GABRA2](GABRA2)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
212
+|[GAK](GAK)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
213
+|[GNAS](GNAS)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
214
+|[GOLGA5](GOLGA5)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
215
+|[GPC5](GPC5)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
216
+|[GSG2](GSG2)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
217
+|[H1FOO](H1FOO)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
218
+|[HDAC7](HDAC7)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
219
+|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|
220
+|[HIST1H2AL](HIST1H2AL)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
221
+|[HIST1H2BO](HIST1H2BO)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
217 222
|[HLA-DMA](HLA-DMA)|2|||
218
-|[HLA-DQA1](HLA-DQA1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
219
-|[HNF1B](HNF1B)|2|[@pasqualucciAnalysisCodingGenome2011]||
220
-|[HNRNPH1](HNRNPH1)|2, noncoding|[@pararajalingamCodingNoncodingDrivers2020]||
221
-|[HRAS](HRAS)|2|[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]|
222
-|[ID3](ID3)|2|[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]|
223
-|[IER2](IER2)|2|[@morinMutationalStructuralAnalysis2013]||
224
-|[IFNGR1](IFNGR1)|2|[@morinMutationalStructuralAnalysis2013]||
225
-|[IGLL5](IGLL5)|2, aSHM||[@russler-germainMutationsAssociatedProgression2023b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
226
-|[IKBKB](IKBKB)|2|[@reddyGeneticFunctionalDrivers2017]|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]|
227
-|[IKBKE](IKBKE)|2|[@hubschmannMutationalMechanismsShaping2021b]||
223
+|[HLA-DQA1](HLA-DQA1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
224
+|[HNF1B](HNF1B)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]||
225
+|[HNRNPH1](HNRNPH1)|2, noncoding|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]||
226
+|[HRAS](HRAS)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]|
227
+|[ID3](ID3)|2|[Study Overview](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]|
228
+|[IER2](IER2)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
229
+|[IFNGR1](IFNGR1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
230
+|[IGLL5](IGLL5)|2, aSHM||[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|
231
+|[IKBKB](IKBKB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiAlterationBIRC3Multiple2011a]|
232
+|[IKBKE](IKBKE)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
228 233
|[IL16](IL16)|2|||
229
-|[IL6](IL6)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
230
-|[INO80](INO80)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
231
-|[IRF1](IRF1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]||
232
-|[JAK1](JAK1)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]|
233
-|[JAK3](JAK3)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
234
-|[JUNB](JUNB)|2|[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
235
-|[KCMF1](KCMF1)|2|[@reddyGeneticFunctionalDrivers2017]||
236
-|[KLHL21](KLHL21)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
237
-|[LAMA5](LAMA5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
234
+|[IL6](IL6)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
235
+|[INO80](INO80)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
236
+|[IRF1](IRF1)|2, aSHM|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
237
+|[JAK1](JAK1)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]|
238
+|[JAK3](JAK3)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
239
+|[JUNB](JUNB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
240
+|[KCMF1](KCMF1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
241
+|[KLHL21](KLHL21)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
242
+|[KRTAP5-5](KRTAP5-5)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
243
+|[LAMA5](LAMA5)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
238 244
|[LAPTM5](LAPTM5)|2, aSHM||[@hubschmannMutationalMechanismsShaping2021b]|
239
-|[LIN54](LIN54)|2|[@reddyGeneticFunctionalDrivers2017]||
240
-|[LPP](LPP)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
241
-|[LRP12](LRP12)|2|[@hubschmannMutationalMechanismsShaping2021b]||
242
-|[LRRN3](LRRN3)|2|[@morinMutationalStructuralAnalysis2013]|[@sarkozyMutationalLandscapeGray2021a]|
243
-|[LYN](LYN)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
244
-|[MAGT1](MAGT1)|2|[@reddyGeneticFunctionalDrivers2017]||
245
-|[MALAT1](MALAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
246
-|[MAP2K1](MAP2K1)|2|[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]|
247
-|[MAP4K4](MAP4K4)|2|[@reddyGeneticFunctionalDrivers2017]||
248
-|[MARK1](MARK1)|2|[@reddyGeneticFunctionalDrivers2017]||
249
-|[MCL1](MCL1)|2|[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
250
-|[MECOM](MECOM)|2|[@reddyGeneticFunctionalDrivers2017]||
251
-|[MET](MET)|2|[@reddyGeneticFunctionalDrivers2017]||
252
-|[MIR142](MIR142)|2, aSHM|[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]|
245
+|[LIN54](LIN54)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
246
+|[LPP](LPP)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
247
+|[LRP12](LRP12)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
248
+|[LRRN3](LRRN3)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@sarkozyMutationalLandscapeGray2021a]|
249
+|[LYN](LYN)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
250
+|[MAGT1](MAGT1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
251
+|[MALAT1](MALAT1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
252
+|[MAP2K1](MAP2K1)|2|[Study Overview](papers/shinBRAFV600EMAP2K12015)[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]|
253
+|[MAP4K4](MAP4K4)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
254
+|[MARK1](MARK1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
255
+|[MCL1](MCL1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
256
+|[MECOM](MECOM)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
257
+|[MET](MET)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
258
+|[MIR142](MIR142)|2, aSHM|[Study Overview](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]|
253 259
|[MIR155HG](MIR155HG)|2, aSHM|||
254
-|[MPDZ](MPDZ)|2|[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]|
255
-|[MSH2](MSH2)|2|[@reddyGeneticFunctionalDrivers2017]||
256
-|[MSH6](MSH6)|2|[@reddyGeneticFunctionalDrivers2017]||
257
-|[MYB](MYB)|2|[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]|
258
-|[MYBPC2](MYBPC2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
260
+|[MPDZ](MPDZ)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]|
261
+|[MSH2](MSH2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
262
+|[MSH6](MSH6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
263
+|[MYB](MYB)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]|
264
+|[MYBPC2](MYBPC2)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
259 265
|[MYO1E](MYO1E)|2, aSHM|||
260
-|[MYOM2](MYOM2)|2|[@pasqualucciAnalysisCodingGenome2011]||
261
-|[NR2F2](N2RF2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
262
-|[NANOG](NANOG)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
263
-|[NAV1](NAV1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
266
+|[MYOM2](MYOM2)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]||
267
+|[N2RF2](N2RF2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
268
+|[NANOG](NANOG)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
269
+|[NAV1](NAV1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
264 270
|[NCOA3](NCOA3)|2, aSHM|||
265
-|[NCOR1](NCOR1)|2|[@reddyGeneticFunctionalDrivers2017]||
271
+|[NCOR1](NCOR1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
266 272
|[NCOR2](NCOR2)|2||[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]|
267
-|[NEAT1](NEAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
268
-|[NF1](NF1)|2|[@reddyGeneticFunctionalDrivers2017]||
273
+|[NEAT1](NEAT1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
274
+|[NF1](NF1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
269 275
|[NFKB1](NFKB1)|2|||
270
-|[NFKB2](NFKB2)|2|[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
276
+|[NFKB2](NFKB2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
271 277
|[NLRC5](NLRC5)|2|||
272
-|[NLRP5](NLRP5)|2|[@morinMutationalStructuralAnalysis2013]||
273
-|[NLRP8](NLRP8)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
274
-|[ODZ3](ODZ3)|2|[@morinMutationalStructuralAnalysis2013]||
275
-|[P2RX5](P2RX5)|2, aSHM|[@morinMutationalStructuralAnalysis2013]||
276
-|[PAPOLG](PAPOLG)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
277
-|[PASK](PASK)|2|[@morinMutationalStructuralAnalysis2013]||
278
-|[PAX5](PAX5)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
278
+|[NLRP5](NLRP5)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
279
+|[NLRP8](NLRP8)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
280
+|[ODZ3](ODZ3)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
281
+|[OR6K3](OR6K3)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
282
+|[P2RX5](P2RX5)|2, aSHM|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
283
+|[PAPOLG](PAPOLG)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
284
+|[PASD1](PASD1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
285
+|[PASK](PASK)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
286
+|[PAX5](PAX5)|2, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
279 287
|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]|
280
-|[PCDHB11](PCDHB11)|2|[@morinMutationalStructuralAnalysis2013]||
281
-|[PCLO](PCLO)|2|[@lohrDiscoveryPrioritizationSomatic2012a]||
282
-|[PDE4DIP](PDE4DIP)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
283
-|[PDS5B](PDS5B)|2|[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]|
284
-|[PHF6](PHF6)|2|[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]|
285
-|[PIK3CD](PIK3CD)|2|[@reddyGeneticFunctionalDrivers2017]||
286
-|[PIK3R1](PIK3R1)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
287
-|[PKD1](PKD1)|2|[@morinMutationalStructuralAnalysis2013]||
288
-|[PNPO](PNPO)|2|[@hubschmannMutationalMechanismsShaping2021b]||
289
-|[POGZ](POGZ)|2|[@morinMutationalStructuralAnalysis2013]||
288
+|[PCDHB11](PCDHB11)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
289
+|[PCDHB6](PCDHB6)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
290
+|[PCLO](PCLO)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
291
+|[PDE4DIP](PDE4DIP)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
292
+|[PDGFC](PDGFC)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
293
+|[PDS5B](PDS5B)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]|
294
+|[PHF6](PHF6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]|
295
+|[PIK3CD](PIK3CD)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
296
+|[PIK3R1](PIK3R1)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
297
+|[PKD1](PKD1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
298
+|[PNPO](PNPO)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
299
+|[POGZ](POGZ)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
290 300
|[PPP1R9B](PPP1R9B)|2|||
291
-|[PRKCB](PRKCB)|2|[@morinMutationalStructuralAnalysis2013]||
292
-|[PRKDC](PRKDC)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]|
293
-|[PRPS1](PRPS1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
301
+|[PRKCB](PRKCB)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
302
+|[PRKDC](PRKDC)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]|
303
+|[PRPS1](PRPS1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
294 304
|[PTMA](PTMA)|2, aSHM|||
295 305
|[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]|
296
-|[PTPN23](PTPN23)|2|[@morinMutationalStructuralAnalysis2013]||
297
-|[PTPN6](PTPN6)|2|[@reddyGeneticFunctionalDrivers2017]||
298
-|[PTPRK](PTPRK)|2|[@reddyGeneticFunctionalDrivers2017]||
299
-|[RAC2](RAC2)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]|
300
-|[RAD9A](RAD9A)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
301
-|[RARA](RARA)|2|[@reddyGeneticFunctionalDrivers2017]||
306
+|[PTPN23](PTPN23)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
307
+|[PTPN6](PTPN6)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
308
+|[PTPRK](PTPRK)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
309
+|[RAC2](RAC2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]|
310
+|[RAD9A](RAD9A)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
311
+|[RARA](RARA)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
302 312
|[RCC](RCC)|2, aSHM|||
303
-|[RFTN1](RFTN1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]|
313
+|[RFTN1](RFTN1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]|
304 314
|[RFXAP](RFXAP)|2|||
305 315
|[RHEX](RHEX)|2, aSHM|||
306
-|[RHOH](RHOH)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
316
+|[RHOH](RHOH)|2, aSHM|[Study Overview](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
307 317
|[RUBCNL](RUBCNL)|2, aSHM|||
308
-|[RUNX1](RUNX1)|2|[@reddyGeneticFunctionalDrivers2017]||
309
-|[SAMD9L](SAMD9L)|2|[@morinMutationalStructuralAnalysis2013]||
310
-|[SARM1](SARM1)|2|[@morinMutationalStructuralAnalysis2013]||
318
+|[RUNX1](RUNX1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
319
+|[S1PR1](S1PR1)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@pararajalingamCodingNoncodingDrivers2020]|
320
+|[SAMD9L](SAMD9L)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
321
+|[SARM1](SARM1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
311 322
|[SEL1L3](SEL1L3)|2, aSHM|||
312 323
|[SEPTIN9](SEPTIN9)|2, aSHM|||
313
-|[SERPINA9](SERPINA9)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
314
-|[SETD2](SETD2)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
315
-|[SETD5](SETD5)|2|[@reddyGeneticFunctionalDrivers2017]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
316
-|[SIAH2](SIAH2)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
317
-|[SLC34A2](SLC34A2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
318
-|[SMEK1](SMEK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
319
-|[SRRM2](SRRM2)|2|[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]|
320
-|[ST6GAL1](ST6GAL1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
321
-|[STAT5B](STAT5B)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
322
-|[SYK](SYK)|2|[@reddyGeneticFunctionalDrivers2017]||
323
-|[SYPL1](SYPL1)|2|[@morinMutationalStructuralAnalysis2013]||
324
-|[TAP1](TAP1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
325
-|[TBC1D4](TBC1D4)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
324
+|[SERPINA9](SERPINA9)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
325
+|[SETD2](SETD2)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
326
+|[SETD5](SETD5)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
327
+|[SIAH2](SIAH2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
328
+|[SLC34A2](SLC34A2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
329
+|[SLC38A8](SLC38A8)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
330
+|[SLITRK6](SLITRK6)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
331
+|[SMEK1](SMEK1)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
332
+|[SRPX](SRPX)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
333
+|[SRRM2](SRRM2)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]|
334
+|[ST6GAL1](ST6GAL1)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
335
+|[STAT5B](STAT5B)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
336
+|[SYK](SYK)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
337
+|[SYN2](SYN2)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
338
+|[SYPL1](SYPL1)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
339
+|[TAP1](TAP1)|2|[Study Overview](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]||
340
+|[TBC1D4](TBC1D4)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
326 341
|[TCL1A](TCL1A)|2, aSHM||[@grandeGenomewideDiscoverySomatic2019]|
327
-|[TGFBR2](TGFBR2)|2|[@reddyGeneticFunctionalDrivers2017]||
328
-|[TIPARP](TIPARP)|2|[@reddyGeneticFunctionalDrivers2017]||
329
-|[TLR2](TLR2)|2|[@chapuyMolecularSubtypesDiffuse2018b]|[@beaLandscapeSomaticMutations2013]|
330
-|[TRAF3](TRAF3)|2|[@pasqualucciAnalysisCodingGenome2011]|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
331
-|[TRAF6](TRAF6)|2|[@hubschmannMutationalMechanismsShaping2021b]||
342
+|[TGFBR2](TGFBR2)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
343
+|[TIPARP](TIPARP)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
344
+|[TLR2](TLR2)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@beaLandscapeSomaticMutations2013]|
345
+|[TMSL3](TMSL3)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
346
+|[TNF](TNF)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
347
+|[TRAF3](TRAF3)|2|[Study Overview](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
348
+|[TRAF6](TRAF6)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
332 349
|[TRIP12](TRIP12)|2|||
333 350
|[UBE2J1](UBE2J1)|2, aSHM|||
334
-|[UBR5](UBR5)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]|
335
-|[UNC5B](UNC5B)|2|[@hubschmannMutationalMechanismsShaping2021b]||
336
-|[UNC5D](UNC5D)|2|||
337
-|[WAC](WAC)|2|[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]|
338
-|[WDFY3](WDFY3)|2|[@morinMutationalStructuralAnalysis2013]||
339
-|[WNK1](WNK1)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@thomasGeneticSubgroupsInform2023; @jalladesExomeSequencingIdentifies2017]|
340
-|[YY1](YY1)|2|[@reddyGeneticFunctionalDrivers2017]||
341
-|[ZBTB7A](ZBTB7A)|2|[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]|
342
-|[ZCCHC7](ZCCHC7)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
343
-|[ZEB2](ZEB2)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
344
-|[ZFAT](ZFAT)|2|[@reddyGeneticFunctionalDrivers2017]||
345
-|[ZFX](ZFX)|2|[@reddyGeneticFunctionalDrivers2017]||
346
-|[ZNF217](ZNF217)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
347
-|[ZNF423](ZNF423)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
351
+|[UBR5](UBR5)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]|
352
+|[UNC5B](UNC5B)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
353
+|[UNC5D](UNC5D)|2|[Study Overview](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]||
354
+|[WAC](WAC)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]|
355
+|[WDFY3](WDFY3)|2|[Study Overview](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]||
356
+|[WNK1](WNK1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@jalladesExomeSequencingIdentifies2017; @thomasGeneticSubgroupsInform2023]|
357
+|[XBP1](XBP1)|2, aSHM|||
358
+|[YY1](YY1)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
359
+|[ZBTB7A](ZBTB7A)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]|
360
+|[ZCCHC7](ZCCHC7)|2, aSHM|[Study Overview](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]||
361
+|[ZEB2](ZEB2)|2|[Study Overview](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]||
362
+|[ZFAT](ZFAT)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
363
+|[ZFX](ZFX)|2|[Study Overview](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]||
364
+|[ZNF217](ZNF217)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
365
+|[ZNF423](ZNF423)|2|[Study Overview](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]||
348 366
349 367
350 368
# References
FL_genes.md
... ...
@@ -16,71 +16,71 @@ link-citations: true
16 16
|Gene|Tier| First FL evidence | Other entities |
17 17
|:-:|:-:|:-|:-|
18 18
|[ACTB](ACTB)|1, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ARID1A](ARID1A)|1|[@krysiakRecurrentSomaticMutations2017b]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]|
20
-|[ATP6AP1](ATP6AP1)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
21
-|[ATP6V1B2](ATP6V1B2)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
22
-|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|
23
-|[BCL2](BCL2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|
19
+|[ARID1A](ARID1A)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019b; @rossiCodingGenomeSplenic2012c]|
20
+|[ATP6AP1](ATP6AP1)|1|[Study Overview](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]||
21
+|[ATP6V1B2](ATP6V1B2)|1|[Study Overview](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]||
22
+|[B2M](B2M)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]|
23
+|[BCL2](BCL2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992]|
24 24
|[BCL6](BCL6)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]|
25
-|[BCL7A](BCL7A)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]|
25
+|[BCL7A](BCL7A)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]|
26 26
|[BIRC6](BIRC6)|1||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]|
27
-|[BTG1](BTG1)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|
28
-|[BTG2](BTG2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
29
-|[BTK](BTK)|1|[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
30
-|[CARD11](CARD11)|1|[@morinFrequentMutationHistonemodifying2011]|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]|
31
-|[CCND3](CCND3)|1|[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]|
32
-|[CD83](CD83)|1, aSHM|[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]|
33
-|[CREBBP](CREBBP)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012]|
34
-|[CTSS](CTSS)|1|[@barariaCathepsinAlterationsInduce2020c]||
35
-|[DTX1](DTX1)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @paneaWholeGenomeLandscape2019]|
36
-|[EBF1](EBF1)|1, aSHM||[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013]|
37
-|[EEF1A1](EEF1A1)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
38
-|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
39
-|[EZH2](EZH2)|1|[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]|
40
-|[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]|
41
-|[FOXO1](FOXO1)|1|[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]|
42
-|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
27
+|[BTG1](BTG1)|1, aSHM||[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]|
28
+|[BTG2](BTG2)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
29
+|[BTK](BTK)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
30
+|[CARD11](CARD11)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016]|
31
+|[CCND3](CCND3)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|
32
+|[CD83](CD83)|1, aSHM|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
33
+|[CREBBP](CREBBP)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]|
34
+|[CTSS](CTSS)|1|[Study Overview](papers/barariaCathepsinAlterationsInduce2020c)[@barariaCathepsinAlterationsInduce2020c]||
35
+|[DTX1](DTX1)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @gomezUltraDeepSequencingReveals2023]|
36
+|[EBF1](EBF1)|1, aSHM||[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]|
37
+|[EEF1A1](EEF1A1)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
38
+|[EP300](EP300)|1|[Study Overview](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
39
+|[EZH2](EZH2)|1|[Study Overview](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|
40
+|[FAS](FAS)|1||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|
41
+|[FOXO1](FOXO1)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|
42
+|[GNA13](GNA13)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
43 43
|[GNAI2](GNAI2)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|
44
-|[HIST1H1B](HIST1H1B)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|
45
-|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
46
-|[HIST1H1D](HIST1H1D)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]|
47
-|[HIST1H1E](HIST1H1E)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]|
48
-|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]|
49
-|[HIST1H2AG](HIST1H2AG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
50
-|[HIST1H2AM](HIST1H2AM)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
51
-|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|
52
-|[HIST1H2BD](HIST1H2BD)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
53
-|[HIST1H2BG](HIST1H2BG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
54
-|[HIST1H3B](HIST1H3B)|1, aSHM||[@zhangGeneticHeterogeneityDiffuse2013; @reichelFlowSortingExome2015a]|
55
-|[HIST1H3G](HIST1H3G)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
56
-|[HVCN1](HVCN1)|1|[@krysiakRecurrentSomaticMutations2017b]||
44
+|[HIST1H1B](HIST1H1B)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|
45
+|[HIST1H1C](HIST1H1C)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
46
+|[HIST1H1D](HIST1H1D)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
47
+|[HIST1H1E](HIST1H1E)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a]|
48
+|[HIST1H2AC](HIST1H2AC)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]|
49
+|[HIST1H2AG](HIST1H2AG)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c]|
50
+|[HIST1H2AM](HIST1H2AM)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
51
+|[HIST1H2BC](HIST1H2BC)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @lohrDiscoveryPrioritizationSomatic2012a]|
52
+|[HIST1H2BD](HIST1H2BD)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
53
+|[HIST1H2BG](HIST1H2BG)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
54
+|[HIST1H3B](HIST1H3B)|1, aSHM||[@reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]|
55
+|[HIST1H3G](HIST1H3G)|1, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
56
+|[HVCN1](HVCN1)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
57 57
|[IRF4](IRF4)|1, aSHM||[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
58
-|[IRF8](IRF8)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|
58
+|[IRF8](IRF8)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|
59 59
|[ITPKB](ITPKB)|1, aSHM||[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|
60
-|[KLF2](KLF2)|1, aSHM||[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]|
61
-|[KLHL6](KLHL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]|
62
-|[KMT2D](KMT2D)|1|[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]|
63
-|[LTB](LTB)|1, aSHM||[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
64
-|[MAP2K1](MAP2K1)|1|[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]|
65
-|[MEF2B](MEF2B)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
60
+|[KLF2](KLF2)|1, aSHM||[@pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]|
61
+|[KLHL6](KLHL6)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]|
62
+|[KMT2D](KMT2D)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013]|
63
+|[LTB](LTB)|1, aSHM||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]|
64
+|[MAP2K1](MAP2K1)|1|[Study Overview](papers/louissaintPediatrictypeNodalFollicular2016a)[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]|
65
+|[MEF2B](MEF2B)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
66 66
|[MEF2C](MEF2C)|1, aSHM||[@arthurGenomewideDiscoverySomatic2018]|
67 67
|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
68
-|[PIM1](PIM1)|1, aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
69
-|[POU2AF1](POU2AF1)|1|[@krysiakRecurrentSomaticMutations2017b]||
70
-|[POU2F2](POU2F2)|1|[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]|
68
+|[PIM1](PIM1)|1, aSHM||[@burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]|
69
+|[POU2AF1](POU2AF1)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
70
+|[POU2F2](POU2F2)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
71 71
|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
72 72
|[RRAGC](RRAGC)|1||[@okosunRecurrentMTORC1activatingRRAGC2016a]|
73 73
|[S1PR2](S1PR2)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|
74
-|[SGK1](SGK1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
75
-|[SMARCA4](SMARCA4)|1|[@krysiakRecurrentSomaticMutations2017b]|[@richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013; @nadeuGenomicEpigenomicInsights2020b]|
76
-|[SOCS1](SOCS1)|1, aSHM||[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]|
77
-|[STAT6](STAT6)|1|[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
78
-|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @mareschalWholeExomeSequencing2016]|
74
+|[SGK1](SGK1)|1, aSHM|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
75
+|[SMARCA4](SMARCA4)|1|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b]|
76
+|[SOCS1](SOCS1)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|
77
+|[STAT6](STAT6)|1|[Study Overview](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
78
+|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]|
79 79
|[TMSB4X](TMSB4X)|1, aSHM||[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
80
-|[TNFAIP3](TNFAIP3)|1||[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]|
81
-|[TNFRSF14](TNFRSF14)|1|[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b]|
82
-|[TP53](TP53)|1|[@morinFrequentMutationHistonemodifying2011]|[@wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]|
83
-|[VMA21](VMA21)|1|[@hubschmannMutationalMechanismsShaping2021b]||
80
+|[TNFAIP3](TNFAIP3)|1||[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]|
81
+|[TNFRSF14](TNFRSF14)|1|[Study Overview](papers/cheungAcquiredTNFRSF14Mutations2010a)[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b; @morinFrequentMutationHistonemodifying2011]|
82
+|[TP53](TP53)|1|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a]|
83
+|[VMA21](VMA21)|1|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
84 84
85 85
## Tier 2 FL genes
86 86
... ...
@@ -88,56 +88,56 @@ link-citations: true
88 88
89 89
|Gene|Tier| First FL evidence | Other entities |
90 90
|:-:|:-:|:-|:-|
91
-|[ABL2](ABL2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
92
-|[ACTG1](ACTG1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]|
93
-|[ATP6V1A](ATP6V1A)|2|[@hubschmannMutationalMechanismsShaping2021b]||
94
-|[BCL10](BCL10)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|
95
-|[CDC42BPB](CDC42BPB)|2|[@hubschmannMutationalMechanismsShaping2021b]||
96
-|[CD70](CD70)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]|
91
+|[ABL2](ABL2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
92
+|[ACTG1](ACTG1)|2, aSHM|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|
93
+|[ATP6V1A](ATP6V1A)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
94
+|[BCL10](BCL10)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|
95
+|[CD70](CD70)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]|
97 96
|[CD79B](CD79B)|2||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
98
-|[CILP](CILP)|2|[@russler-germainMutationsAssociatedProgression2023b]||
99
-|[CPNE8](CPNE8)|2|[@hubschmannMutationalMechanismsShaping2021b]||
100
-|[CXCR4](CXCR4)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012]|
101
-|[CYP2A6](CYP2A6)|2|[@russler-germainMutationsAssociatedProgression2023b]||
97
+|[CDC42BPB](CDC42BPB)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b]|
98
+|[CILP](CILP)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
99
+|[CPNE8](CPNE8)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
100
+|[CXCR4](CXCR4)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]|
101
+|[CYP2A6](CYP2A6)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
102 102
|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
103
-|[DHX15](DHX15)|2|[@hubschmannMutationalMechanismsShaping2021b]||
104
-|[DUSP2](DUSP2)|2, aSHM||[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
105
-|[EGR1](EGR1)|2|[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]|
106
-|[FZR1](FZR1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
107
-|[GBP7](GBP7)|2|[@russler-germainMutationsAssociatedProgression2023b]||
108
-|[GRM6](GRM6)|2|[@russler-germainMutationsAssociatedProgression2023b]||
109
-|[HIST1H2BM](HIST1H2BM)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
110
-|[HIST1H3I](HIST1H3I)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
111
-|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b]|
103
+|[DHX15](DHX15)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
104
+|[DUSP2](DUSP2)|2, aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]|
105
+|[EGR1](EGR1)|2|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@rossiCodingGenomeSplenic2012c; @reichelFlowSortingExome2015a]|
106
+|[FZR1](FZR1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
107
+|[GBP7](GBP7)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
108
+|[GRM6](GRM6)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
109
+|[HIST1H2BM](HIST1H2BM)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]||
110
+|[HIST1H3I](HIST1H3I)|2, aSHM|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
111
+|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]|
112 112
|[HNRNPD](HNRNPD)|2|||
113
-|[IGLL5](IGLL5)|2, aSHM|[@russler-germainMutationsAssociatedProgression2023b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
114
-|[JUP](JUP)|2|[@hubschmannMutationalMechanismsShaping2021b]||
115
-|[KIR3DL1](KIR3DL1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
116
-|[LAPTM5](LAPTM5)|2|[@hubschmannMutationalMechanismsShaping2021b]||
117
-|[MAGEC1](MAGEC1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
118
-|[MAP7D1](MAP7D1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
119
-|[MGEA5](MGEA5)|2|[@hubschmannMutationalMechanismsShaping2021b]||
120
-|[MKI67](MKI67)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]|
121
-|[MYC](MYC)|2, aSHM||[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
122
-|[MYCBP2](MYCBP2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
123
-|[MYD88](MYD88)|2||[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|
124
-|[NFKBIA](NFKBIA)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@wienandGenomicAnalysesFlowsorted2019b; @lakeMutationsNFKBIAEncoding2009]|
125
-|[OR8H2](OR8H2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
126
-|[P2RY8](P2RY8)|2||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]|
127
-|[PDS5B](PDS5B)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@morinMutationalStructuralAnalysis2013]|
128
-|[PPP4C](PPP4C)|2|[@hubschmannMutationalMechanismsShaping2021b]||
129
-|[PRKDC](PRKDC)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
130
-|[PZP](PZP)|2|[@russler-germainMutationsAssociatedProgression2023b]||
131
-|[RBM6](RBM6)|2|[@hubschmannMutationalMechanismsShaping2021b]||
132
-|[SESN1](SESN1)|2|[@oricchioGeneticEpigeneticInactivation2017b]||
133
-|[SHROOM3](SHROOM3)|2|[@russler-germainMutationsAssociatedProgression2023b]||
134
-|[SRRM2](SRRM2)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013]|
135
-|[STAB2](STAB2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
136
-|[TMEM30A](TMEM30A)|2|[@morinFrequentMutationHistonemodifying2011]||
137
-|[TPP1](TPP1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
138
-|[XIRP2](XIRP2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
113
+|[IGLL5](IGLL5)|2, aSHM|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]|
114
+|[JUP](JUP)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
115
+|[KIR3DL1](KIR3DL1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
116
+|[LAPTM5](LAPTM5)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
117
+|[MAGEC1](MAGEC1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
118
+|[MAP7D1](MAP7D1)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
119
+|[MGEA5](MGEA5)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
120
+|[MKI67](MKI67)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]|
121
+|[MYC](MYC)|2, aSHM||[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]|
122
+|[MYCBP2](MYCBP2)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
123
+|[MYD88](MYD88)|2||[@yanBCRTLRSignaling2012a; @ngoOncogenicallyActiveMYD882011a]|
124
+|[NFKBIA](NFKBIA)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@lakeMutationsNFKBIAEncoding2009; @wienandGenomicAnalysesFlowsorted2019b]|
125
+|[OR8H2](OR8H2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
126
+|[P2RY8](P2RY8)|2||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|
127
+|[PDS5B](PDS5B)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@morinMutationalStructuralAnalysis2013]|
128
+|[PPP4C](PPP4C)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
129
+|[PRKDC](PRKDC)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
130
+|[PZP](PZP)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
131
+|[RBM6](RBM6)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
132
+|[SESN1](SESN1)|2|[Study Overview](papers/oricchioGeneticEpigeneticInactivation2017b)[@oricchioGeneticEpigeneticInactivation2017b]||
133
+|[SHROOM3](SHROOM3)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
134
+|[SRRM2](SRRM2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013]|
135
+|[STAB2](STAB2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
136
+|[TMEM30A](TMEM30A)|2|[Study Overview](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]||
137
+|[TPP1](TPP1)|2|[Study Overview](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]||
138
+|[XIRP2](XIRP2)|2|[Study Overview](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]||
139 139
|[ZC3H12A](ZC3H12A)|2||[@arthurGenomewideDiscoverySomatic2018]|
140
-|[ZNF608](ZNF608)|2|[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]|
140
+|[ZNF608](ZNF608)|2|[Study Overview](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]|
141 141
142 142
143 143
# References
MCL_genes.md
... ...
@@ -7,34 +7,7 @@ link-citations: true
7 7
8 8
## Origins of MCL genes
9 9
10
-```mermaid
11
----
12
-config:
13
- sankey:
14
- showValues: false
15
- linkColor: target
16
- width: 800
17
- height: 500
18
- nodeAlignment: right
19
----
20
-sankey-beta
21
-Zhang 2014, MCL Tier 1, 2
22
-Zhang 2014, MCL Tier 2, 26
23
-Nadeu 2020, MCL Tier 1, 3
24
-Nadeu 2020, MCL Tier 2, 2
25
-Pararajalingam 2020, MCL Tier 1, 6
26
-Pararajalingam 2020, MCL Tier 2, 1
27
-Bea 2013, MCL Tier 1, 11
28
-Bea 2013, MCL Tier 2, 16
29
-MCL, exome, 28
30
-exome, Zhang 2014, 28
31
-MCL, WGS/exome, 7
32
-WGS/exome, Pararajalingam 2020, 7
33
-MCL, WGS, 5
34
-WGS, Nadeu 2020, 5
35
-MCL, WGS/exome, 27
36
-WGS/exome, Bea 2013, 27
37
-```
10
+![](MCL_sankey-1.svg)
38 11
39 12
## Tier 1 MCL genes
40 13
... ...
@@ -42,29 +15,29 @@ WGS/exome, Bea 2013, 27
42 15
43 16
|Gene|Tier| First MCL evidence | Other entities |
44 17
|:-:|:-:|:-|:-|
45
-|[ATM](ATM)|1|[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]|
46
-|[BIRC3](BIRC3)|1|[@beaLandscapeSomaticMutations2013]|[@arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]|
47
-|[CARD11](CARD11)|1|[@wuGeneticHeterogeneityPrimary2016]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a]|
48
-|[CCND1](CCND1)|1, aSHM|[@beaLandscapeSomaticMutations2013]||
49
-|[DAZAP1](DAZAP1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
50
-|[EWSR1](EWSR1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
51
-|[HNRNPH1](HNRNPH1)|1, noncoding|[@pararajalingamCodingNoncodingDrivers2020]||
52
-|[KMT2D](KMT2D)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019]|
53
-|[MEF2B](MEF2B)|1|[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]|
54
-|[NFKBIE](NFKBIE)|1|[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]|
55
-|[NOTCH1](NOTCH1)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012]|
56
-|[NOTCH2](NOTCH2)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019]|
57
-|[NSD2](NSD2)|1|[@beaLandscapeSomaticMutations2013]||
58
-|[POT1](POT1)|1|[@zhangGenomicLandscapeMantle2014]||
59
-|[RB1](RB1)|1|[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]|
60
-|[S1PR1](S1PR1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
61
-|[SMARCA4](SMARCA4)|1|[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @richterRecurrentMutationID32012a]|
62
-|[SP140](SP140)|1|[@beaLandscapeSomaticMutations2013]||
63
-|[SYNE1](SYNE1)|1|[@nadeuGenomicEpigenomicInsights2020b]||
64
-|[TERT](TERT)|1, noncoding|[@nadeuGenomicEpigenomicInsights2020b]||
65
-|[TLR2](TLR2)|1|[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]|
66
-|[TP53](TP53)|1|[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004]|
67
-|[UBR5](UBR5)|1|[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]|
18
+|[ATM](ATM)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]|
19
+|[BIRC3](BIRC3)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]|
20
+|[CARD11](CARD11)|1|[Study Overview](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]|
21
+|[CCND1](CCND1)|1, aSHM|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
22
+|[DAZAP1](DAZAP1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]||
23
+|[EWSR1](EWSR1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]||
24
+|[HNRNPH1](HNRNPH1)|1, noncoding|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]||
25
+|[KMT2D](KMT2D)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]|
26
+|[MEF2B](MEF2B)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]|
27
+|[NFKBIE](NFKBIE)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]|
28
+|[NOTCH1](NOTCH1)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]|
29
+|[NOTCH2](NOTCH2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@troenNOTCH2MutationsMarginal2008; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
30
+|[NSD2](NSD2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
31
+|[POT1](POT1)|1|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
32
+|[RB1](RB1)|1|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]|
33
+|[S1PR1](S1PR1)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@lohrDiscoveryPrioritizationSomatic2012a]|
34
+|[SMARCA4](SMARCA4)|1|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a]|
35
+|[SP140](SP140)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
36
+|[SYNE1](SYNE1)|1|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]||
37
+|[TERT](TERT)|1, noncoding|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]||
38
+|[TLR2](TLR2)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]|
39
+|[TP53](TP53)|1|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]|
40
+|[UBR5](UBR5)|1|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]|
68 41
69 42
## Tier 2 MCL genes
70 43
... ...
@@ -72,52 +45,52 @@ WGS/exome, Bea 2013, 27
72 45
73 46
|Gene|Tier| First MCL evidence | Other entities |
74 47
|:-:|:-:|:-|:-|
75
-|[ABCA3](ABCA3)|2|[@beaLandscapeSomaticMutations2013]||
76
-|[ABCC9](ABCC9)|2|[@beaLandscapeSomaticMutations2013]||
77
-|[ANK2](ANK2)|2|[@zhangGenomicLandscapeMantle2014]||
48
+|[ABCA3](ABCA3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
49
+|[ABCC9](ABCC9)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
50
+|[ANK2](ANK2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
78 51
|[ARID1B](ARID1B)|2||[@reddyGeneticFunctionalDrivers2017]|
79
-|[ATP11C](ATP11C)|2|[@zhangGenomicLandscapeMantle2014]||
80
-|[B2M](B2M)|2|[@pararajalingamCodingNoncodingDrivers2020]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|
81
-|[BCOR](BCOR)|2|[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]|
82
-|[CDH8](CDH8)|2|[@zhangGenomicLandscapeMantle2014]||
83
-|[CHMP4C](CHMP4C)|2|[@beaLandscapeSomaticMutations2013]||
84
-|[COL11A1](COL11A1)|2|[@zhangGenomicLandscapeMantle2014]||
85
-|[COL16A1](COL16A1)|2|[@zhangGenomicLandscapeMantle2014]||
86
-|[CRYBG3](CRYBG3)|2|[@beaLandscapeSomaticMutations2013]||
87
-|[CTNNA2](CTNNA2)|2|[@zhangGenomicLandscapeMantle2014]||
88
-|[DCP1B](DCP1B)|2|[@beaLandscapeSomaticMutations2013]||
89
-|[DHDH](DHDH)|2|[@zhangGenomicLandscapeMantle2014]||
90
-|[DLC1](DLC1)|2|[@zhangGenomicLandscapeMantle2014]||
91
-|[DLGAP2](DLGAP2)|2|[@beaLandscapeSomaticMutations2013]||
92
-|[DNAJC6](DNAJC6)|2|[@beaLandscapeSomaticMutations2013]||
93
-|[EIF2AK4](EIF2AK4)|2|[@zhangGenomicLandscapeMantle2014]||
94
-|[ESX1](ESX1)|2|[@zhangGenomicLandscapeMantle2014]||
95
-|[FAT4](FAT4)|2|[@zhangGenomicLandscapeMantle2014]|[@parryWholeExomeSequencing2013; @morinMutationalStructuralAnalysis2013]|
96
-|[GRIN2A](GRIN2A)|2|[@zhangGenomicLandscapeMantle2014]||
97
-|[HEPH](HEPH)|2|[@zhangGenomicLandscapeMantle2014]||
98
-|[KCNC2](KCNC2)|2|[@beaLandscapeSomaticMutations2013]||
99
-|[KIAA1671](KIAA1671)|2|[@beaLandscapeSomaticMutations2013]||
100
-|[KMT2C](KMT2C)|2|[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]|
101
-|[LUZP4](LUZP4)|2|[@beaLandscapeSomaticMutations2013]||
102
-|[MRGPRF](MRGPRF)|2|[@zhangGenomicLandscapeMantle2014]||
103
-|[NIN](NIN)|2|[@zhangGenomicLandscapeMantle2014]||
104
-|[OGDHL](OGDHL)|2|[@zhangGenomicLandscapeMantle2014]||
105
-|[PCDHB2](PCDHB2)|2|[@zhangGenomicLandscapeMantle2014]||
106
-|[PCSK2](PCSK2)|2|[@beaLandscapeSomaticMutations2013]||
107
-|[PDLIM3](PDLIM3)|2|[@beaLandscapeSomaticMutations2013]||
108
-|[PLXNB3](PLXNB3)|2|[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]|
109
-|[RGS4](RGS4)|2|[@beaLandscapeSomaticMutations2013]||
110
-|[ROBO2](ROBO2)|2|[@zhangGenomicLandscapeMantle2014]||
111
-|[SALL3](SALL3)|2|[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]|
112
-|[SI](SI)|2|[@zhangGenomicLandscapeMantle2014]||
113
-|[SLC17A6](SLC17A6)|2|[@beaLandscapeSomaticMutations2013]||
114
-|[SMARCB1](SMARCB1)|2|[@nadeuGenomicEpigenomicInsights2020b]||
115
-|[SMC1A](SMC1A)|2|[@zhangGenomicLandscapeMantle2014]||
116
-|[TBC1D26](TBC1D26)|2|[@zhangGenomicLandscapeMantle2014]||
117
-|[TNRC6B](TNRC6B)|2|[@beaLandscapeSomaticMutations2013]||
118
-|[TRPM6](TRPM6)|2|[@beaLandscapeSomaticMutations2013]||
119
-|[ZNF117](ZNF117)|2|[@zhangGenomicLandscapeMantle2014]||
120
-|[ZNF296](ZNF296)|2|[@zhangGenomicLandscapeMantle2014]||
52
+|[ATP11C](ATP11C)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
53
+|[B2M](B2M)|2|[Study Overview](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]|
54
+|[BCOR](BCOR)|2|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]|
55
+|[CDH8](CDH8)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
56
+|[CHMP4C](CHMP4C)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
57
+|[COL11A1](COL11A1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
58
+|[COL16A1](COL16A1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
59
+|[CRYBG3](CRYBG3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
60
+|[CTNNA2](CTNNA2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
61
+|[DCP1B](DCP1B)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
62
+|[DHDH](DHDH)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
63
+|[DLC1](DLC1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
64
+|[DLGAP2](DLGAP2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
65
+|[DNAJC6](DNAJC6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
66
+|[EIF2AK4](EIF2AK4)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
67
+|[ESX1](ESX1)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
68
+|[FAT4](FAT4)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|
69
+|[GRIN2A](GRIN2A)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
70
+|[HEPH](HEPH)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
71
+|[KCNC2](KCNC2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
72
+|[KIAA1671](KIAA1671)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
73
+|[KMT2C](KMT2C)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]|
74
+|[LUZP4](LUZP4)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
75
+|[MRGPRF](MRGPRF)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
76
+|[NIN](NIN)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
77
+|[OGDHL](OGDHL)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
78
+|[PCDHB2](PCDHB2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
79
+|[PCSK2](PCSK2)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
80
+|[PDLIM3](PDLIM3)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
81
+|[PLXNB3](PLXNB3)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]|
82
+|[RGS4](RGS4)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
83
+|[ROBO2](ROBO2)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
84
+|[SALL3](SALL3)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]|
85
+|[SI](SI)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
86
+|[SLC17A6](SLC17A6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
87
+|[SMARCB1](SMARCB1)|2|[Study Overview](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]||
88
+|[SMC1A](SMC1A)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
89
+|[TBC1D26](TBC1D26)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
90
+|[TNRC6B](TNRC6B)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
91
+|[TRPM6](TRPM6)|2|[Study Overview](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]||
92
+|[ZNF117](ZNF117)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
93
+|[ZNF296](ZNF296)|2|[Study Overview](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]||
121 94
122 95
123 96
# References
PMBL_genes.md
... ...
@@ -7,57 +7,7 @@ link-citations: true
7 7
8 8
## Origins of PMBL genes
9 9
10
-```mermaid
11
----
12
-config:
13
- sankey:
14
- showValues: false
15
- linkColor: target
16
- width: 800
17
- height: 550
18
- nodeAlignment: right
19
----
20
-sankey-beta
21
-Tiacci 2018, Tier 1 PMBL genes, 1
22
-Tiacci 2018, Tier 2 PMBL genes, 9
23
-Duns 2021, Tier 1 PMBL genes, 5
24
-Duns 2021, Tier 2 PMBL genes, 8
25
-Desch 2020, Tier 1 PMBL genes, 1
26
-Desch 2020, Tier 2 PMBL genes, 9
27
-Weniger 2006, Tier 1 PMBL genes, 1
28
-Weniger 2006, Tier 2 PMBL genes, 1
29
-Gomez 2023, Tier 1 PMBL genes, 2
30
-Gomez 2023, Tier 2 PMBL genes, 5
31
-Wienand 2019, Tier 1 PMBL genes, 4
32
-Wienand 2019, Tier 2 PMBL genes, 3
33
-Otto 2012, Tier 1 PMBL genes, 2
34
-Reichel 2015, Tier 1 PMBL genes, 11
35
-Reichel 2015, Tier 2 PMBL genes, 18
36
-Sarkozy 2021, Tier 1 PMBL genes, 5
37
-Sarkozy 2021, Tier 2 PMBL genes, 6
38
-Mottok 2019, Tier 1 PMBL genes, 6
39
-Mottok 2019, Tier 2 PMBL genes, 15
40
-PMBL genes, PMBL-exome, 13
41
-PMBL-exome, Duns 2021, 13
42
-PMBL genes, PMBL-exome, 10
43
-PMBL-exome, Tiacci 2018, 10
44
-PMBL genes, PMBL-panel, 10
45
-PMBL-panel, Desch 2020, 10
46
-PMBL genes, PMBL-exome, 7
47
-PMBL-exome, Gomez 2023, 7
48
-PMBL genes, PMBL-Sanger, 2
49
-PMBL-Sanger, Weniger 2006, 2
50
-PMBL genes, PMBL-exome, 7
51
-PMBL-exome, Wienand 2019, 7
52
-PMBL genes, PMBL-exome, 29
53
-PMBL-exome, Reichel 2015, 29
54
-PMBL genes, PMBL-Array/Sanger, 2
55
-PMBL-Array/Sanger, Otto 2012, 2
56
-PMBL genes, PMBL-exome, 11
57
-PMBL-exome, Sarkozy 2021, 11
58
-PMBL genes, PMBL-exome, 21
59
-PMBL-exome, Mottok 2019, 21
60
-```
10
+![](PMBL_sankey-1.svg)
61 11
62 12
## Tier 1 PMBL genes
63 13
... ...
@@ -65,82 +15,82 @@ PMBL-exome, Mottok 2019, 21
65 15
66 16
|Gene|Tier| First PMBL evidence | Other entities |
67 17
|:-:|:-:|:-|:-|
68
-|[ACTB](ACTB)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
69
-|[ARID1A](ARID1A)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b]|
70
-|[ARID5B](ARID5B)|1|[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]|
71
-|[B2M](B2M)|1|[@reichelFlowSortingExome2015a]|[@pararajalingamCodingNoncodingDrivers2020; @morinFrequentMutationHistonemodifying2011]|
72
-|[BIRC6](BIRC6)|1|[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]|
73
-|[BTG1](BTG1)|1|[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]|
74
-|[CD58](CD58)|1|[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]|
75
-|[CD83](CD83)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]|
76
-|[CDKN2A](CDKN2A)|1||[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
77
-|[CHD8](CHD8)|1||[@grandeGenomewideDiscoverySomatic2019; @reddyGeneticFunctionalDrivers2017]|
78
-|[CIITA](CIITA)|1|[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]|
79
-|[CISH](CISH)|1|[@mottokIntegrativeGenomicAnalysis2019b]||
80
-|[CREBBP](CREBBP)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|
81
-|[CSF2RB](CSF2RB)|1|[@reichelFlowSortingExome2015a]||
82
-|[DDX3X](DDX3X)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzBurkittLymphomaPathogenesis2012; @schmitzGeneticsPathogenesisDiffuse2018a]|
83
-|[DTX1](DTX1)|1|[@gomezUltraDeepSequencingReveals2023]|[@schmitzGeneticsPathogenesisDiffuse2018a; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
84
-|[DUSP2](DUSP2)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013]|
85
-|[EBF1](EBF1)|1|[@reichelFlowSortingExome2015a]|[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]|
86
-|[EEF1A1](EEF1A1)|1|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
18
+|[ACTB](ACTB)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
19
+|[ARID1A](ARID1A)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]|
20
+|[ARID5B](ARID5B)|1|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]|
21
+|[B2M](B2M)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@pararajalingamCodingNoncodingDrivers2020; @morinFrequentMutationHistonemodifying2011]|
22
+|[BIRC6](BIRC6)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]|
23
+|[BTG1](BTG1)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]|
24
+|[CD58](CD58)|1|[Study Overview](papers/schneiderAlterationsCD58Gene2015a)[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]|
25
+|[CD83](CD83)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013]|
26
+|[CDKN2A](CDKN2A)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|
27
+|[CHD8](CHD8)|1||[@reddyGeneticFunctionalDrivers2017; @grandeGenomewideDiscoverySomatic2019]|
28
+|[CIITA](CIITA)|1|[Study Overview](papers/mottokGenomicAlterationsCIITA2015b)[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]|
29
+|[CISH](CISH)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
30
+|[CREBBP](CREBBP)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @parryWholeExomeSequencing2013]|
31
+|[CSF2RB](CSF2RB)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
32
+|[DDX3X](DDX3X)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012]|
33
+|[DTX1](DTX1)|1|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@rossiCodingGenomeSplenic2012c; @schmitzGeneticsPathogenesisDiffuse2018a; @loveGeneticLandscapeMutations2012]|
34
+|[DUSP2](DUSP2)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
35
+|[EBF1](EBF1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]|
36
+|[EEF1A1](EEF1A1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
87 37
|[ETS1](ETS1)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
88 38
|[EWSR1](EWSR1)|1||[@pararajalingamCodingNoncodingDrivers2020]|
89
-|[EZH2](EZH2)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]|
39
+|[EZH2](EZH2)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]|
90 40
|[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]|
91 41
|[FAT1](FAT1)|1||[@spinaGeneticsNodalMarginal2016b]|
92
-|[FAT4](FAT4)|1||[@zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|
93
-|[GNA13](GNA13)|1|[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]|
94
-|[HIST1H1B](HIST1H1B)|1|[@sarkozyMutationalLandscapeGray2021a]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]|
95
-|[HIST1H1C](HIST1H1C)|1||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
96
-|[HIST1H1D](HIST1H1D)|1||[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]|
97
-|[HIST1H1E](HIST1H1E)|1|[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]|
98
-|[HLA-B](HLA-B)|1|[@wienandGenomicAnalysesFlowsorted2019b]||
99
-|[IL4R](IL4R)|1|[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]|
100
-|[IRF8](IRF8)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
101
-|[ITPKB](ITPKB)|1|[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
102
-|[JAK1](JAK1)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]|
103
-|[KMT2C](KMT2C)|1|[@sarkozyMutationalLandscapeGray2021a]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|
104
-|[LTB](LTB)|1|[@deschGenotypingCirculatingTumor2020]|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|
105
-|[MAP3K14](MAP3K14)|1|[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]|
106
-|[MS4A1](MS4A1)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]|
107
-|[NFKBIA](NFKBIA)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@lakeMutationsNFKBIAEncoding2009; @russler-germainMutationsAssociatedProgression2023b]|
108
-|[NFKBIE](NFKBIE)|1|[@mansouriFrequentNFKBIEDeletions2016]|[@morinGeneticLandscapesRelapsed2016; @pararajalingamCodingNoncodingDrivers2020]|
42
+|[FAT4](FAT4)|1||[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]|
43
+|[GNA13](GNA13)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]|
44
+|[HIST1H1B](HIST1H1B)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]|
45
+|[HIST1H1C](HIST1H1C)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
46
+|[HIST1H1D](HIST1H1D)|1||[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]|
47
+|[HIST1H1E](HIST1H1E)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b]|
48
+|[HLA-B](HLA-B)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
49
+|[IL4R](IL4R)|1|[Study Overview](papers/viganoSomaticIL4RMutations2018b)[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]|
50
+|[IRF8](IRF8)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
51
+|[ITPKB](ITPKB)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
52
+|[JAK1](JAK1)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]|
53
+|[KMT2C](KMT2C)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|
54
+|[LTB](LTB)|1|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|
55
+|[MAP3K14](MAP3K14)|1|[Study Overview](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]|
56
+|[MS4A1](MS4A1)|1|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]|
57
+|[NFKBIA](NFKBIA)|1|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@russler-germainMutationsAssociatedProgression2023b; @lakeMutationsNFKBIAEncoding2009]|
58
+|[NFKBIE](NFKBIE)|1|[Study Overview](papers/mansouriFrequentNFKBIEDeletions2016)[@mansouriFrequentNFKBIEDeletions2016]|[@pararajalingamCodingNoncodingDrivers2020; @morinGeneticLandscapesRelapsed2016]|
109 59
|[OSBPL10](OSBPL10)|1||[@arthurGenomewideDiscoverySomatic2018]|
110
-|[P2RY8](P2RY8)|1||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]|
60
+|[P2RY8](P2RY8)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|
111 61
|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
112 62
|[PHIP](PHIP)|1|||
113
-|[PIM1](PIM1)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]|
114
-|[PIM2](PIM2)|1|[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]|
115
-|[PRKDC](PRKDC)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]|
116
-|[PTPN1](PTPN1)|1|[@gunawardanaRecurrentSomaticMutations2014c]||
63
+|[PIM1](PIM1)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]|
64
+|[PIM2](PIM2)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]|
65
+|[PRKDC](PRKDC)|1||[@hubschmannMutationalMechanismsShaping2021b; @schmitzGeneticsPathogenesisDiffuse2018a]|
66
+|[PTPN1](PTPN1)|1|[Study Overview](papers/gunawardanaRecurrentSomaticMutations2014c)[@gunawardanaRecurrentSomaticMutations2014c]||
117 67
|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
118 68
|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]|
119 69
|[S1PR2](S1PR2)|1||[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]|
120
-|[SGK1](SGK1)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]|
121
-|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|
70
+|[SGK1](SGK1)|1|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]|
71
+|[SIN3A](SIN3A)|1||[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]|
122 72
|[SMARCA2](SMARCA2)|1|||
123
-|[SMARCA4](SMARCA4)|1||[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013]|
124
-|[SOCS1](SOCS1)|1|[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]|
125
-|[SPEN](SPEN)|1|[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]|
126
-|[STAT3](STAT3)|1||[@ohgamiSTAT3MutationsAre2014]|
127
-|[STAT6](STAT6)|1|[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]|
73
+|[SMARCA4](SMARCA4)|1||[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a]|
74
+|[SOCS1](SOCS1)|1|[Study Overview](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]|
75
+|[SPEN](SPEN)|1|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]|
76
+|[STAT3](STAT3)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
77
+|[STAT6](STAT6)|1|[Study Overview](papers/ritzRecurrentMutationsSTAT62009a)[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]|
128 78
|[TAP1](TAP1)|1||[@schmitzGeneticsPathogenesisDiffuse2018a]|
129
-|[TBL1XR1](TBL1XR1)|1||[@mareschalWholeExomeSequencing2016; @rossiCodingGenomeSplenic2012c]|
79
+|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]|
130 80
|[TCF3](TCF3)|1||[@schmitzBurkittLymphomaPathogenesis2012]|
131 81
|[TET3](TET3)|1|||
132 82
|[TMSB4X](TMSB4X)|1||[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
133
-|[TNFAIP3](TNFAIP3)|1|[@schmitzTNFAIP3A20Tumor2009a]|[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]|
83
+|[TNFAIP3](TNFAIP3)|1|[Study Overview](papers/schmitzTNFAIP3A20Tumor2009a)[@schmitzTNFAIP3A20Tumor2009a]|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a]|
134 84
|[TNFRSF1B](TNFRSF1B)|1|||
135
-|[TP53](TP53)|1|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c]|
136
-|[TRAF3](TRAF3)|1|[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]|
137
-|[UBE2A](UBE2A)|1|[@reichelFlowSortingExome2015a]|[@reddyGeneticFunctionalDrivers2017]|
138
-|[UBR5](UBR5)|1||[@zhangGeneticHeterogeneityDiffuse2013; @pararajalingamCodingNoncodingDrivers2020]|
139
-|[UNC5C](UNC5C)|1|||
140
-|[VPS13B](VPS13B)|1|||
141
-|[WEE1](WEE1)|1|[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
142
-|[XPO1](XPO1)|1|[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]|
143
-|[ZFP36L1](ZFP36L1)|1|[@reichelFlowSortingExome2015a]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
85
+|[TP53](TP53)|1|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a]|
86
+|[TRAF3](TRAF3)|1|[Study Overview](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]|
87
+|[UBE2A](UBE2A)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]|
88
+|[UBR5](UBR5)|1||[@pararajalingamCodingNoncodingDrivers2020; @zhangGeneticHeterogeneityDiffuse2013]|
89
+|[UNC5C](UNC5C)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
90
+|[VPS13B](VPS13B)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
91
+|[WEE1](WEE1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
92
+|[XPO1](XPO1)|1|[Study Overview](papers/jardinRecurrentMutationsExportin2016a)[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]|
93
+|[ZFP36L1](ZFP36L1)|1|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
144 94
145 95
## Tier 2 PMBL genes
146 96
... ...
@@ -148,88 +98,88 @@ PMBL-exome, Mottok 2019, 21
148 98
149 99
|Gene|Tier| First PMBL evidence | Other entities |
150 100
|:-:|:-:|:-|:-|
151
-|[ABCA13](ABCA13)|2|[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]|
152
-|[ACTG1](ACTG1)|2|[@deschGenotypingCirculatingTumor2020]|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b]|
153
-|[AKAP6](AKAP6)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
154
-|[ARIH2](ARIH2)|2|[@reichelFlowSortingExome2015a]||
155
-|[AXDND1](AXDND1)|2|[@gomezUltraDeepSequencingReveals2023]||
156
-|[BCL2](BCL2)|2|[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992; @morinFrequentMutationHistonemodifying2011]|
157
-|[BCL7A](BCL7A)|2|[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @arthurGenomewideDiscoverySomatic2018]|
158
-|[BIRC3](BIRC3)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @arthurGenomewideDiscoverySomatic2018]|
159
-|[CCND3](CCND3)|2|[@deschGenotypingCirculatingTumor2020]|[@morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|
160
-|[CDH2](CDH2)|2|[@deschGenotypingCirculatingTumor2020]||
161
-|[CDH5](CDH5)|2|[@gomezUltraDeepSequencingReveals2023]||
162
-|[CXCR5](CXCR5)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
163
-|[DGKB](DGKB)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
164
-|[DMD](DMD)|2|[@reichelFlowSortingExome2015a]||
165
-|[DNAH12](DNAH12)|2|[@wienandGenomicAnalysesFlowsorted2019b]||
166
-|[EGR1](EGR1)|2|[@reichelFlowSortingExome2015a]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
167
-|[EPHA7](EPHA7)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
168
-|[EZR](EZR)|2|[@deschGenotypingCirculatingTumor2020]||
169
-|[FOXO1](FOXO1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]|
170
-|[GCSAM](GCSAM)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
171
-|[GPR126](GPR126)|2|[@wenigerMutationsTumorSuppressor2006a]||
172
-|[HECW2](HECW2)|2|[@reichelFlowSortingExome2015a]||
173
-|[HELLS](HELLS)|2|[@reichelFlowSortingExome2015a]||
174
-|[HIST1H2BC](HIST1H2BC)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017; @krysiakRecurrentSomaticMutations2017b]|
175
-|[HIST1H3B](HIST1H3B)|2|[@reichelFlowSortingExome2015a]|[@zhangGeneticHeterogeneityDiffuse2013]|
176
-|[HIST1H4C](HIST1H4C)|2|[@reichelFlowSortingExome2015a]||
177
-|[HIST1H4E](HIST1H4E)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
178
-|[HIST1H4J](HIST1H4J)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]|
179
-|[HLA-A](HLA-A)|2|[@deschGenotypingCirculatingTumor2020]||
180
-|[HLA-C](HLA-C)|2|[@gomezUltraDeepSequencingReveals2023]||
181
-|[HRNR](HRNR)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
182
-|[IGLL5](IGLL5)|2|[@deschGenotypingCirculatingTumor2020]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]|
183
-|[IKBKB](IKBKB)|2|[@wienandGenomicAnalysesFlowsorted2019b]|[@reddyGeneticFunctionalDrivers2017; @rossiAlterationBIRC3Multiple2011a]|
184
-|[IL13RA1](IL13RA1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
185
-|[IL1RAPL2](IL1RAPL2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
186
-|[IRF2BP2](IRF2BP2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
187
-|[IRF4](IRF4)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011]|
101
+|[ABCA13](ABCA13)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]|
102
+|[ACTG1](ACTG1)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b]|
103
+|[AKAP6](AKAP6)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
104
+|[ARIH2](ARIH2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
105
+|[AXDND1](AXDND1)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]||
106
+|[BCL2](BCL2)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992; @morinFrequentMutationHistonemodifying2011]|
107
+|[BCL7A](BCL7A)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018]|
108
+|[BIRC3](BIRC3)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]|
109
+|[CCND3](CCND3)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017]|
110
+|[CDH2](CDH2)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]||
111
+|[CDH5](CDH5)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]||
112
+|[CXCR5](CXCR5)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
113
+|[DGKB](DGKB)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
114
+|[DMD](DMD)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
115
+|[DNAH12](DNAH12)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]||
116
+|[EGR1](EGR1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
117
+|[EPHA7](EPHA7)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
118
+|[EZR](EZR)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]||
119
+|[FOXO1](FOXO1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011]|
120
+|[GCSAM](GCSAM)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
121
+|[GPR126](GPR126)|2|[Study Overview](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]||
122
+|[HECW2](HECW2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
123
+|[HELLS](HELLS)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
124
+|[HIST1H2BC](HIST1H2BC)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]|
125
+|[HIST1H3B](HIST1H3B)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]|
126
+|[HIST1H4C](HIST1H4C)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
127
+|[HIST1H4E](HIST1H4E)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
128
+|[HIST1H4J](HIST1H4J)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]|
129
+|[HLA-A](HLA-A)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@lohrDiscoveryPrioritizationSomatic2012a]|
130
+|[HLA-C](HLA-C)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]||
131
+|[HRNR](HRNR)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]||
132
+|[IGLL5](IGLL5)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|
133
+|[IKBKB](IKBKB)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiAlterationBIRC3Multiple2011a; @reddyGeneticFunctionalDrivers2017]|
134
+|[IL13RA1](IL13RA1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
135
+|[IL1RAPL2](IL1RAPL2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
136
+|[IRF2BP2](IRF2BP2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
137
+|[IRF4](IRF4)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011]|
188 138
|[ITGB2](ITGB2)|2|||
189
-|[ITPR3](ITPR3)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]|
190
-|[JUNB](JUNB)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
191
-|[KLF2](KLF2)|2|[@deschGenotypingCirculatingTumor2020]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|
192
-|[KMT2D](KMT2D)|2|[@deschGenotypingCirculatingTumor2020]|[@grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|
193
-|[LIMD2](LIMD2)|2|[@gomezUltraDeepSequencingReveals2023]||
194
-|[LPHN3](LPHN3)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
195
-|[LRRN3](LRRN3)|2|[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]|
196
-|[MAGEC2](MAGEC2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
197
-|[MCL1](MCL1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @reddyGeneticFunctionalDrivers2017]|
198
-|[MFHAS1](MFHAS1)|2|[@sarkozyMutationalLandscapeGray2021a]||
199
-|[MPDZ](MPDZ)|2|[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]|
200
-|[MYB](MYB)|2|[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]|
201
-|[MYC](MYC)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
202
-|[NCOR2](NCOR2)|2|[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
203
-|[NEK1](NEK1)|2|[@reichelFlowSortingExome2015a]||
204
-|[NFKB2](NFKB2)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
139
+|[ITPR3](ITPR3)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]|
140
+|[JUNB](JUNB)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
141
+|[KLF2](KLF2)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|
142
+|[KMT2D](KMT2D)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013]|
143
+|[LIMD2](LIMD2)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]||
144
+|[LPHN3](LPHN3)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]||
145
+|[LRRN3](LRRN3)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]|
146
+|[MAGEC2](MAGEC2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
147
+|[MCL1](MCL1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @reddyGeneticFunctionalDrivers2017]|
148
+|[MFHAS1](MFHAS1)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]||
149
+|[MPDZ](MPDZ)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]|
150
+|[MYB](MYB)|2|[Study Overview](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]|
151
+|[MYC](MYC)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992]|
152
+|[NCOR2](NCOR2)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
153
+|[NEK1](NEK1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
154
+|[NFKB2](NFKB2)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
205 155
|[NSD2](NSD2)|2||[@beaLandscapeSomaticMutations2013]|
206
-|[NUP214](NUP214)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
207
-|[OR13C2](OR13C2)|2|[@gomezUltraDeepSequencingReveals2023]||
156
+|[NUP214](NUP214)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
157
+|[OR13C2](OR13C2)|2|[Study Overview](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]||
208 158
|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]|
209 159
|[PCDH7](PCDH7)|2|||
210
-|[PRUNE2](PRUNE2)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
211
-|[RANBP2](RANBP2)|2|[@reichelFlowSortingExome2015a]||
212
-|[RBM38](RBM38)|2|[@wienandGenomicAnalysesFlowsorted2019b]||
160
+|[PRUNE2](PRUNE2)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
161
+|[RANBP2](RANBP2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
162
+|[RBM38](RBM38)|2|[Study Overview](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]||
213 163
|[RDH12](RDH12)|2|||
214
-|[RELN](RELN)|2|[@sarkozyMutationalLandscapeGray2021a]||
215
-|[RFTN1](RFTN1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]|
216
-|[RGS1](RGS1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
164
+|[RELN](RELN)|2|[Study Overview](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]||
165
+|[RFTN1](RFTN1)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]|
166
+|[RGS1](RGS1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
217 167
|[SCN9A](SCN9A)|2|||
218
-|[SENP7](SENP7)|2|[@reichelFlowSortingExome2015a]||
219
-|[SETD5](SETD5)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]|
220
-|[SETDB1](SETDB1)|2|[@reichelFlowSortingExome2015a]||
221
-|[SIAH2](SIAH2)|2|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
168
+|[SENP7](SENP7)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
169
+|[SETD5](SETD5)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]|
170
+|[SETDB1](SETDB1)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
171
+|[SIAH2](SIAH2)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
222 172
|[SMAD3](SMAD3)|2|||
223
-|[STAT5B](STAT5B)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@zhangGeneticHeterogeneityDiffuse2013]|
173
+|[STAT5B](STAT5B)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@zhangGeneticHeterogeneityDiffuse2013]|
224 174
|[STRAP](STRAP)|2|||
225
-|[TBC1D15](TBC1D15)|2|[@reichelFlowSortingExome2015a]||
226
-|[TICRR](TICRR)|2|[@reichelFlowSortingExome2015a]||
227
-|[TNIP1](TNIP1)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
228
-|[TRIP11](TRIP11)|2|[@reichelFlowSortingExome2015a]||
229
-|[VMP1](VMP1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
230
-|[WDR87](WDR87)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
231
-|[ZCCHC11](ZCCHC11)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
232
-|[ZNF217](ZNF217)|2|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
175
+|[TBC1D15](TBC1D15)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
176
+|[TICRR](TICRR)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
177
+|[TNIP1](TNIP1)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
178
+|[TRIP11](TRIP11)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]||
179
+|[VMP1](VMP1)|2|[Study Overview](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]||
180
+|[WDR87](WDR87)|2|[Study Overview](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]||
181
+|[ZCCHC11](ZCCHC11)|2|[Study Overview](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]||
182
+|[ZNF217](ZNF217)|2|[Study Overview](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
233 183
234 184
235 185
# References