Supplemental_Methods_and_Results.md
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@@ -87,116 +87,111 @@ The FLAGS rank of DLBCL genes in Tier 1, 2 and 3 is compared. The genes in the C
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*See also:* [IGV reports](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/)
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-![CARD4 - Average rating: ★ ★ ★ ★ ☆](primary/Love_CARD4.svg)
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+![CARD4 (**pass**) - Average rating: ★ ★ ★ ★ ☆](primary/Love_CARD4.svg)
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-![ACAD9 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ACAD9.svg)
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+![ACAD9 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ACAD9.svg)
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-![ACE - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ACE.svg)
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+![ACE (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ACE.svg)
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-![ATP2C2 - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_ATP2C2.svg)
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+![ATP2C2 (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_ATP2C2.svg)
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-![BRAF - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BRAF.svg)
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+![BRAF (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BRAF.svg)
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-![c6orf27 - Average rating: Germline](primary/Love_C6orf27_germline.svg)
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+![c6orf27 (**fail**) - Average rating: Germline](primary/Love_C6orf27_germline.svg)
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-![BRD4 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BRD4.svg)
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+![BRD4 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BRD4.svg)
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-![CYB5D1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CYB5D1.svg)
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+![CYB5D1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CYB5D1.svg)
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-![BTG2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BTG2.svg)
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+![BTG2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_BTG2.svg)
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-![CAD - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CAD.svg)
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+![CAD (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CAD.svg)
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-![CCT6B - Average rating: Germline](primary/Love_CCT6B.svg)
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+![CCT6B (**fail**) - Average rating: Germline](primary/Love_CCT6B.svg)
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-![CDH17 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CDH17.svg)
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+![CDH17 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CDH17.svg)
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-![COL4A2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_COL4A2.svg)
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+![COL4A2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_COL4A2.svg)
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-![CYP4F22 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CYP4F22_15523136.png)
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+![CYP4F22 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_CYP4F22_15523136.png)
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-![DLGAP1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_DLGAP_chr18_3869854.png)
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+![DLGAP1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_DLGAP_chr18_3869854.png)
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-![DTX1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_DTX1_chr12_112017255.png)
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+![DTX1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_DTX1_chr12_112017255.png)
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-![EIF2C4 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_EIF2C4.svg)
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+![EIF2C4 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_EIF2C4.svg)
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-![EML2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_EML2_50816396.png)
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+![EML2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_EML2_50816396.png)
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-![ENTPD3 - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_ENTPD3.svg)
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+![ENTPD3 (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_ENTPD3.svg)
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-![EPHB2 - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_EPHB2.svg)
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+![EPHB2 (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_EPHB2.svg)
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-![FAM129B - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_FAM129B.svg)
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+![FAM129B (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_FAM129B.svg)
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-![FGFR3 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_FGFR3.svg)
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+![FGFR3 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_FGFR3.svg)
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-![FTCD - Average rating: Germline](primary/Love_FTCD.svg)
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+![FTCD (**fail**) - Average rating: Germline](primary/Love_FTCD.svg)
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-![GRIK5 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_GRIK5.svg)
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+![GRIK5 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_GRIK5.svg)
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-![ICK - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ICK.svg)
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+![ICK (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ICK.svg)
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-![ITPR3 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ITPR3.svg)
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+![ITPR3 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_ITPR3.svg)
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-![KIFC3 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_KIFC3_2_56362071.png)
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+![KIFC3 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_KIFC3_2_56362071.png)
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-![MAP3K6 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_MAP3K6.svg)
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+![MAP3K6 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_MAP3K6.svg)
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-![MYH10 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_MYH10.svg)
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+![MYH10 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_MYH10.svg)
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-![NOTCH1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_NOTCH1.svg)
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+![NOTCH1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_NOTCH1.svg)
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-![NRXN2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_NRXN2.svg)
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+![NRXN2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_NRXN2.svg)
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-![PC - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PC_chr11_66374870.png)
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+![PC (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PC_chr11_66374870.png)
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-![POLRMT - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_POLRMT.svg)
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+![POLRMT (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_POLRMT.svg)
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+![POR (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_POR.svg)
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-![POR - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_POR.svg)
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+![PRSS22 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PRSS22.svg)
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+![PTPRN (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PTPRN.svg)
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-![PRSS22 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PRSS22.svg)
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+![RBP3 (**fail**)](primary/Love_RBP3.svg)
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-![PTPRN - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_PTPRN.svg)
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+![RET (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_RET_42930092.png)
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-![RBP3](primary/Love_RBP3.svg)
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+![SALL3 (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_SALL3.svg)
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-![RET - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_RET_42930092.png)
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+![SAPS2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SAPS2.svg)
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-![SALL3 - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_SALL3.svg)
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+![SBF1 (**fail**) - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_SBF1.svg)
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+![SF3B1 (**fail**) - Average rating: ★ ★ ★ ★ ☆](primary/Love_SF3B1.svg)
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+![SLC29A2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SLC29A2.svg)
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-![SAPS2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SAPS2.svg)
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+![SHANK1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SHANK1.svg)
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+![SYNGAP1 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SYNGAP1_33518868.png)
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-![SBF1 - Average rating: ★ ★ ☆ ☆ ☆](primary/Love_SBF1.svg)
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-![SF3B1 - Average rating: ★ ★ ★ ★ ☆](primary/Love_SF3B1.svg)
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+![TBC1D9B (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TBC1D9B.svg)
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-![SLC29A2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SLC29A2.svg)
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+![TIGD6 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TIGD6.svg)
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-![SHANK1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SHANK1.svg)
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+![TPST2 (**fail**) - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TPST2.svg)
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-![SYNGAP1 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_SYNGAP1_33518868.png)
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-![TBC1D9B - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TBC1D9B.svg)
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-![TIGD6 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TIGD6.svg)
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-![TPST2 - Average rating: ★ ☆ ☆ ☆ ☆](primary/Love_TPST2.svg)
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-![ZNF229 - Average rating: Germline](primary/Love_ZNF229_chr19_49624750_also_in_germline.png)
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+![ZNF229 (**fail**) - Average rating: Germline](primary/Love_ZNF229_chr19_49624750_also_in_germline.png)
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