papers/abateDistinctViralMutational2015a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, BL Tier 1,
27
-This study, BL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, BL Tier 2, 1
30 29
Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
30
+Other studies, BL Tier 2, 156
32 31
```
33 32
34 33
papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 3
26 26
New Tier 1, DLBCL Tier 1, 3
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 125
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/arthurGenomewideDiscoverySomatic2018.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 8
26 26
New Tier 1, DLBCL Tier 1, 8
27
-This study, DLBCL Tier 2, 12
28 27
This study, New Tier 2, 12
29 28
New Tier 2, DLBCL Tier 2, 12
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 120
30
+Other studies, DLBCL Tier 2, 186
32 31
```
33 32
34 33
papers/barariaCathepsinAlterationsInduce2020c.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, FL Tier 1, 1
27
-This study, FL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, FL Tier 2,
30
-Other studies, FL Tier 1, 66
29
+Other studies, FL Tier 1, 65
31 30
Other studies, FL Tier 2, 50
32 31
```
33 32
papers/beaLandscapeSomaticMutations2013.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 11
26 26
New Tier 1, MCL Tier 1, 11
27
-This study, MCL Tier 2, 16
28 27
This study, New Tier 2, 16
29 28
New Tier 2, MCL Tier 2, 16
30
-Other studies, MCL Tier 1, 23
31
-Other studies, MCL Tier 2, 46
29
+Other studies, MCL Tier 1, 12
30
+Other studies, MCL Tier 2, 30
32 31
```
33 32
34 33
papers/bohleRoleEarlyBcell2013.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/braggioGenomicAnalysisMarginal2012.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, MZL Tier 1, 1
27
-This study, MZL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, MZL Tier 2,
30
-Other studies, MZL Tier 1, 42
29
+Other studies, MZL Tier 1, 41
31 30
Other studies, MZL Tier 2, 74
32 31
```
33 32
papers/burkhardtClinicalRelevanceMolecular2022b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, BL Tier 1,
27
-This study, BL Tier 2, 25
28 27
This study, New Tier 2, 25
29 28
New Tier 2, BL Tier 2, 25
30 29
Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
30
+Other studies, BL Tier 2, 132
32 31
```
33 32
34 33
papers/chapuyMolecularSubtypesDiffuse2018b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, DLBCL Tier 1, 2
27
-This study, DLBCL Tier 2, 17
28 27
This study, New Tier 2, 17
29 28
New Tier 2, DLBCL Tier 2, 17
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 126
30
+Other studies, DLBCL Tier 2, 181
32 31
```
33 32
34 33
papers/cheungAcquiredTNFRSF14Mutations2010a.md
... ...
@@ -25,10 +25,9 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 1
27 27
New Tier 1, DLBCL Tier 1, 1
28
-This study, DLBCL Tier 2,
29 28
This study, New Tier 2,
30 29
New Tier 2, DLBCL Tier 2,
31
-Other studies, DLBCL Tier 1, 128
30
+Other studies, DLBCL Tier 1, 127
32 31
Other studies, DLBCL Tier 2, 198
33 32
```
34 33
papers/compagnoMutationsMultipleGenes2009a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/deschGenotypingCirculatingTumor2020.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2, 9
28 27
This study, New Tier 2, 9
29 28
New Tier 2, PMBL Tier 2, 9
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 75
30
+Other studies, PMBL Tier 2, 73
32 31
```
33 32
34 33
papers/dunsCharacterizationDLBCLPMBL2021b.md
... ...
@@ -8,8 +8,8 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|PMBL|6|8|
12 11
|DLBCL|8|3|
12
+|PMBL|6|8|
13 13
```mermaid
14 14
---
15 15
config:
... ...
@@ -25,32 +25,31 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 6
27 27
New Tier 1, PMBL Tier 1, 6
28
-This study, PMBL Tier 2, 8
29 28
This study, New Tier 2, 8
30 29
New Tier 2, PMBL Tier 2, 8
31
-Other studies, PMBL Tier 1, 76
32
-Other studies, PMBL Tier 2, 82
30
+Other studies, PMBL Tier 1, 70
31
+Other studies, PMBL Tier 2, 74
33 32
```
34 33
35 34
36 35
## Novel genes reported in this study
37 36
38
-|New gene|PMBL tier|DLBCL tier|
37
+|New gene|DLBCL tier|PMBL tier|
39 38
|:-|:-:|:-:|
40 39
|[BIRC3](BIRC3)|2 |2 |
41 40
|[CD83](CD83)|1 |1 |
42 41
|[CREBBP](CREBBP)|1 |1 |
43 42
|[DUSP2](DUSP2)|1 |1 |
44
-|[FOXO1](FOXO1)|2 |1 |
45
-|[HRNR](HRNR)|2 | |
43
+|[FOXO1](FOXO1)|1 |2 |
44
+|[HRNR](HRNR)| |2 |
46 45
|[IL4R](IL4R)|1 |1 |
47
-|[LPHN3](LPHN3)|2 | |
46
+|[LPHN3](LPHN3)| |2 |
48 47
|[MCL1](MCL1)|2 |2 |
49
-|[MYC](MYC)|2 |1 |
48
+|[MYC](MYC)|1 |2 |
50 49
|[PIM1](PIM1)|1 |1 |
51 50
|[RFTN1](RFTN1)|2 |2 |
52 51
|[SGK1](SGK1)|1 |1 |
53
-|[WDR87](WDR87)|2 | |
52
+|[WDR87](WDR87)| |2 |
54 53
55 54
# Details
56 55
papers/ganapathiGeneticLandscapeDural2016.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, MZL Tier 1, 1
27
-This study, MZL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, MZL Tier 2,
30
-Other studies, MZL Tier 1, 42
29
+Other studies, MZL Tier 1, 41
31 30
Other studies, MZL Tier 2, 74
32 31
```
33 32
papers/gomezUltraDeepSequencingReveals2023.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, PMBL Tier 1, 2
27
-This study, PMBL Tier 2, 5
28 27
This study, New Tier 2, 5
29 28
New Tier 2, PMBL Tier 2, 5
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 74
30
+Other studies, PMBL Tier 2, 77
32 31
```
33 32
34 33
papers/grandeGenomewideDiscoverySomatic2019.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 9
26 26
New Tier 1, BL Tier 1, 9
27
-This study, BL Tier 2, 4
28 27
This study, New Tier 2, 4
29 28
New Tier 2, BL Tier 2, 4
30
-Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
29
+Other studies, BL Tier 1, 20
30
+Other studies, BL Tier 2, 153
32 31
```
33 32
34 33
papers/gunawardanaRecurrentSomaticMutations2014c.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -25,11 +25,10 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 3
27 27
New Tier 1, DLBCL Tier 1, 3
28
-This study, DLBCL Tier 2, 23
29 28
This study, New Tier 2, 23
30 29
New Tier 2, DLBCL Tier 2, 23
31
-Other studies, DLBCL Tier 1, 128
32
-Other studies, DLBCL Tier 2, 198
30
+Other studies, DLBCL Tier 1, 125
31
+Other studies, DLBCL Tier 2, 175
33 32
```
34 33
35 34
papers/jalladesExomeSequencingIdentifies2017.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, MZL Tier 1, 2
27
-This study, MZL Tier 2, 26
28 27
This study, New Tier 2, 26
29 28
New Tier 2, MZL Tier 2, 26
30
-Other studies, MZL Tier 1, 42
31
-Other studies, MZL Tier 2, 74
29
+Other studies, MZL Tier 1, 40
30
+Other studies, MZL Tier 2, 48
32 31
```
33 32
34 33
papers/jardinRecurrentMutationsExportin2016a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/johnstonCmycHypermutationBurkitt1992.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, BL Tier 1, 1
27
-This study, BL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, BL Tier 2,
30
-Other studies, BL Tier 1, 29
29
+Other studies, BL Tier 1, 28
31 30
Other studies, BL Tier 2, 157
32 31
```
33 32
papers/khodabakhshiRecurrentTargetsAberrant2012.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/krysiakRecurrentSomaticMutations2017b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 17
26 26
New Tier 1, FL Tier 1, 17
27
-This study, FL Tier 2, 5
28 27
This study, New Tier 2, 5
29 28
New Tier 2, FL Tier 2, 5
30
-Other studies, FL Tier 1, 66
31
-Other studies, FL Tier 2, 50
29
+Other studies, FL Tier 1, 49
30
+Other studies, FL Tier 2, 45
32 31
```
33 32
34 33
papers/kwanhianMicroRNA142Mutated202012b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, DLBCL Tier 1,
27
-This study, DLBCL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, DLBCL Tier 2, 1
30 29
Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
30
+Other studies, DLBCL Tier 2, 197
32 31
```
33 32
34 33
papers/lakeMutationsNFKBIAEncoding2009.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/lenzOncogenicCARD11Mutations2008.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/lohrDiscoveryPrioritizationSomatic2012a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 3
26 26
New Tier 1, DLBCL Tier 1, 3
27
-This study, DLBCL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, DLBCL Tier 2, 1
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 125
30
+Other studies, DLBCL Tier 2, 197
32 31
```
33 32
34 33
papers/louissaintPediatrictypeNodalFollicular2016a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, FL Tier 1, 1
27
-This study, FL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, FL Tier 2,
30
-Other studies, FL Tier 1, 66
29
+Other studies, FL Tier 1, 65
31 30
Other studies, FL Tier 2, 50
32 31
```
33 32
papers/loveGeneticLandscapeMutations2012.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 3
26 26
New Tier 1, BL Tier 1, 3
27
-This study, BL Tier 2, 56
28 27
This study, New Tier 2, 56
29 28
New Tier 2, BL Tier 2, 56
30
-Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
29
+Other studies, BL Tier 1, 26
30
+Other studies, BL Tier 2, 101
32 31
```
33 32
34 33
papers/mansouriFrequentNFKBIEDeletions2016.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/mareschalWholeExomeSequencing2016.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, DLBCL Tier 1, 2
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 126
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/morinFrequentMutationHistonemodifying2011.md
... ...
@@ -25,11 +25,10 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 27
27 27
New Tier 1, DLBCL Tier 1, 27
28
-This study, DLBCL Tier 2, 1
29 28
This study, New Tier 2, 1
30 29
New Tier 2, DLBCL Tier 2, 1
31
-Other studies, DLBCL Tier 1, 128
32
-Other studies, DLBCL Tier 2, 198
30
+Other studies, DLBCL Tier 1, 101
31
+Other studies, DLBCL Tier 2, 197
33 32
```
34 33
35 34
papers/morinGeneticLandscapesRelapsed2016.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, DLBCL Tier 1, 2
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 126
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/morinMutationalStructuralAnalysis2013.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 11
26 26
New Tier 1, DLBCL Tier 1, 11
27
-This study, DLBCL Tier 2, 29
28 27
This study, New Tier 2, 29
29 28
New Tier 2, DLBCL Tier 2, 29
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 117
30
+Other studies, DLBCL Tier 2, 169
32 31
```
33 32
34 33
papers/morinSomaticMutationsAltering2010a.md
... ...
@@ -8,8 +8,8 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|1||
12 11
|FL|1||
12
+|DLBCL|1||
13 13
```mermaid
14 14
---
15 15
config:
... ...
@@ -25,17 +25,16 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 1
27 27
New Tier 1, FL Tier 1, 1
28
-This study, FL Tier 2,
29 28
This study, New Tier 2,
30 29
New Tier 2, FL Tier 2,
31
-Other studies, FL Tier 1, 66
30
+Other studies, FL Tier 1, 65
32 31
Other studies, FL Tier 2, 50
33 32
```
34 33
35 34
36 35
## Novel genes reported in this study
37 36
38
-|New gene|DLBCL tier|FL tier|
37
+|New gene|FL tier|DLBCL tier|
39 38
|:-|:-:|:-:|
40 39
|[EZH2](EZH2)|1 |1 |
41 40
papers/mottokGenomicAlterationsCIITA2015b.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/mottokIntegrativeGenomicAnalysis2019b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 6
26 26
New Tier 1, PMBL Tier 1, 6
27
-This study, PMBL Tier 2, 15
28 27
This study, New Tier 2, 15
29 28
New Tier 2, PMBL Tier 2, 15
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 70
30
+Other studies, PMBL Tier 2, 67
32 31
```
33 32
34 33
papers/muppidiLossSignalingGa132014b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, BL Tier 1, 1
27
-This study, BL Tier 2, 2
28 27
This study, New Tier 2, 2
29 28
New Tier 2, BL Tier 2, 2
30
-Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
29
+Other studies, BL Tier 1, 28
30
+Other studies, BL Tier 2, 155
32 31
```
33 32
34 33
papers/nadeuGenomicEpigenomicInsights2020b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 3
26 26
New Tier 1, MCL Tier 1, 3
27
-This study, MCL Tier 2, 2
28 27
This study, New Tier 2, 2
29 28
New Tier 2, MCL Tier 2, 2
30
-Other studies, MCL Tier 1, 23
31
-Other studies, MCL Tier 2, 46
29
+Other studies, MCL Tier 1, 20
30
+Other studies, MCL Tier 2, 44
32 31
```
33 32
34 33
papers/ngoOncogenicallyActiveMYD882011a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/ohgamiSTAT3MutationsAre2014.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/okosunRecurrentMTORC1activatingRRAGC2016a.md
... ...
@@ -25,10 +25,9 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 3
27 27
New Tier 1, FL Tier 1, 3
28
-This study, FL Tier 2,
29 28
This study, New Tier 2,
30 29
New Tier 2, FL Tier 2,
31
-Other studies, FL Tier 1, 66
30
+Other studies, FL Tier 1, 63
32 31
Other studies, FL Tier 2, 50
33 32
```
34 33
papers/oricchioGeneticEpigeneticInactivation2017b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, FL Tier 1,
27
-This study, FL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, FL Tier 2, 1
30 29
Other studies, FL Tier 1, 66
31
-Other studies, FL Tier 2, 50
30
+Other studies, FL Tier 2, 49
32 31
```
33 32
34 33
papers/ottoGeneticLesionsTRAF32012a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, PMBL Tier 1, 2
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 74
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/paneaWholeGenomeLandscape2019.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 4
26 26
New Tier 1, BL Tier 1, 4
27
-This study, BL Tier 2, 46
28 27
This study, New Tier 2, 46
29 28
New Tier 2, BL Tier 2, 46
30
-Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
29
+Other studies, BL Tier 1, 25
30
+Other studies, BL Tier 2, 111
32 31
```
33 32
34 33
papers/pararajalingamCodingNoncodingDrivers2020.md
... ...
@@ -25,11 +25,10 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 6
27 27
New Tier 1, MCL Tier 1, 6
28
-This study, MCL Tier 2, 1
29 28
This study, New Tier 2, 1
30 29
New Tier 2, MCL Tier 2, 1
31
-Other studies, MCL Tier 1, 23
32
-Other studies, MCL Tier 2, 46
30
+Other studies, MCL Tier 1, 17
31
+Other studies, MCL Tier 2, 45
33 32
```
34 33
35 34
papers/parryWholeExomeSequencing2013.md
... ...
@@ -25,11 +25,10 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1,
27 27
New Tier 1, MZL Tier 1,
28
-This study, MZL Tier 2, 8
29 28
This study, New Tier 2, 8
30 29
New Tier 2, MZL Tier 2, 8
31 30
Other studies, MZL Tier 1, 42
32
-Other studies, MZL Tier 2, 74
31
+Other studies, MZL Tier 2, 66
33 32
```
34 33
35 34
papers/pasqualucciAnalysisCodingGenome2011.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 3
26 26
New Tier 1, DLBCL Tier 1, 3
27
-This study, DLBCL Tier 2, 4
28 27
This study, New Tier 2, 4
29 28
New Tier 2, DLBCL Tier 2, 4
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 125
30
+Other studies, DLBCL Tier 2, 194
32 31
```
33 32
34 33
papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, DLBCL Tier 1, 2
27
-This study, DLBCL Tier 2, 2
28 27
This study, New Tier 2, 2
29 28
New Tier 2, DLBCL Tier 2, 2
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 126
30
+Other studies, DLBCL Tier 2, 196
32 31
```
33 32
34 33
papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md
... ...
@@ -25,10 +25,9 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 2
27 27
New Tier 1, FL Tier 1, 2
28
-This study, FL Tier 2,
29 28
This study, New Tier 2,
30 29
New Tier 2, FL Tier 2,
31
-Other studies, FL Tier 1, 66
30
+Other studies, FL Tier 1, 64
32 31
Other studies, FL Tier 2, 50
33 32
```
34 33
papers/pasqualucciInactivationPRDM1BLIMP12006a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/reddyGeneticFunctionalDrivers2017.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 7
26 26
New Tier 1, DLBCL Tier 1, 7
27
-This study, DLBCL Tier 2, 53
28 27
This study, New Tier 2, 53
29 28
New Tier 2, DLBCL Tier 2, 53
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 121
30
+Other studies, DLBCL Tier 2, 145
32 31
```
33 32
34 33
papers/reichelFlowSortingExome2015a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 11
26 26
New Tier 1, PMBL Tier 1, 11
27
-This study, PMBL Tier 2, 18
28 27
This study, New Tier 2, 18
29 28
New Tier 2, PMBL Tier 2, 18
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 65
30
+Other studies, PMBL Tier 2, 64
32 31
```
33 32
34 33
papers/richterRecurrentMutationID32012a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 5
26 26
New Tier 1, BL Tier 1, 5
27
-This study, BL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, BL Tier 2,
30
-Other studies, BL Tier 1, 29
29
+Other studies, BL Tier 1, 24
31 30
Other studies, BL Tier 2, 157
32 31
```
33 32
papers/ritzRecurrentMutationsSTAT62009a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/rossiAlterationBIRC3Multiple2011a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 4
26 26
New Tier 1, MZL Tier 1, 4
27
-This study, MZL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, MZL Tier 2, 1
30
-Other studies, MZL Tier 1, 42
31
-Other studies, MZL Tier 2, 74
29
+Other studies, MZL Tier 1, 38
30
+Other studies, MZL Tier 2, 73
32 31
```
33 32
34 33
papers/rossiCodingGenomeSplenic2012c.md
... ...
@@ -8,8 +8,8 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|MZL|10|11|
12 11
|DLBCL|12|2|
12
+|MZL|10|11|
13 13
```mermaid
14 14
---
15 15
config:
... ...
@@ -25,38 +25,37 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 10
27 27
New Tier 1, MZL Tier 1, 10
28
-This study, MZL Tier 2, 11
29 28
This study, New Tier 2, 11
30 29
New Tier 2, MZL Tier 2, 11
31
-Other studies, MZL Tier 1, 42
32
-Other studies, MZL Tier 2, 74
30
+Other studies, MZL Tier 1, 32
31
+Other studies, MZL Tier 2, 63
33 32
```
34 33
35 34
36 35
## Novel genes reported in this study
37 36
38
-|New gene|MZL tier|DLBCL tier|
37
+|New gene|DLBCL tier|MZL tier|
39 38
|:-|:-:|:-:|
40 39
|[ARID1A](ARID1A)|1 |1 |
41
-|[CD79A](CD79A)|2 | |
40
+|[CD79A](CD79A)| |2 |
42 41
|[DTX1](DTX1)|1 |1 |
43
-|[EGR1](EGR1)|2 | |
44
-|[EGR2](EGR2)|2 | |
42
+|[EGR1](EGR1)| |2 |
43
+|[EGR2](EGR2)| |2 |
45 44
|[EP300](EP300)|1 |1 |
46
-|[GPS2](GPS2)|2 | |
45
+|[GPS2](GPS2)| |2 |
47 46
|[HIST1H2AG](HIST1H2AG)|2 |2 |
48
-|[HIST1H2BK](HIST1H2BK)|2 |1 |
47
+|[HIST1H2BK](HIST1H2BK)|1 |2 |
49 48
|[KMT2D](KMT2D)|1 |1 |
50
-|[MCRS1](MCRS1)|2 | |
51
-|[MSL2](MSL2)|2 | |
49
+|[MCRS1](MCRS1)| |2 |
50
+|[MSL2](MSL2)| |2 |
52 51
|[NOTCH1](NOTCH1)|1 |1 |
53 52
|[NOTCH2](NOTCH2)|1 |1 |
54 53
|[SIN3A](SIN3A)|1 |1 |
55 54
|[SPEN](SPEN)|1 |1 |
56
-|[SWAP70](SWAP70)|2 | |
55
+|[SWAP70](SWAP70)| |2 |
57 56
|[TBL1XR1](TBL1XR1)|1 |1 |
58 57
|[TP53](TP53)|1 |1 |
59
-|[TRRAP](TRRAP)|2 |1 |
58
+|[TRRAP](TRRAP)|1 |2 |
60 59
|[WAC](WAC)|2 |2 |
61 60
62 61
# Details
papers/rushtonGeneticEvolutionaryPatterns2020.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/russler-germainMutationsAssociatedProgression2023b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, FL Tier 1, 1
27
-This study, FL Tier 2, 19
28 27
This study, New Tier 2, 19
29 28
New Tier 2, FL Tier 2, 19
30
-Other studies, FL Tier 1, 66
31
-Other studies, FL Tier 2, 50
29
+Other studies, FL Tier 1, 65
30
+Other studies, FL Tier 2, 31
32 31
```
33 32
34 33
papers/sarkozyMutationalLandscapeGray2021a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 5
26 26
New Tier 1, PMBL Tier 1, 5
27
-This study, PMBL Tier 2, 6
28 27
This study, New Tier 2, 6
29 28
New Tier 2, PMBL Tier 2, 6
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 71
30
+Other studies, PMBL Tier 2, 76
32 31
```
33 32
34 33
papers/schmitzBurkittLymphomaPathogenesis2012.md
... ...
@@ -25,11 +25,10 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 4
27 27
New Tier 1, BL Tier 1, 4
28
-This study, BL Tier 2, 16
29 28
This study, New Tier 2, 16
30 29
New Tier 2, BL Tier 2, 16
31
-Other studies, BL Tier 1, 29
32
-Other studies, BL Tier 2, 157
30
+Other studies, BL Tier 1, 25
31
+Other studies, BL Tier 2, 141
33 32
```
34 33
35 34
papers/schmitzGeneticsPathogenesisDiffuse2018a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 7
26 26
New Tier 1, DLBCL Tier 1, 7
27
-This study, DLBCL Tier 2, 9
28 27
This study, New Tier 2, 9
29 28
New Tier 2, DLBCL Tier 2, 9
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 121
30
+Other studies, DLBCL Tier 2, 189
32 31
```
33 32
34 33
papers/schmitzTNFAIP3A20Tumor2009a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/schneiderAlterationsCD58Gene2015a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/schollMutationsRegionFAS2007.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/shinBRAFV600EMAP2K12015.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, DLBCL Tier 1,
27
-This study, DLBCL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, DLBCL Tier 2, 1
30 29
Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
30
+Other studies, DLBCL Tier 2, 197
32 31
```
33 32
34 33
papers/spinaGeneticsNodalMarginal2016b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 8
26 26
New Tier 1, MZL Tier 1, 8
27
-This study, MZL Tier 2, 23
28 27
This study, New Tier 2, 23
29 28
New Tier 2, MZL Tier 2, 23
30
-Other studies, MZL Tier 1, 42
31
-Other studies, MZL Tier 2, 74
29
+Other studies, MZL Tier 1, 34
30
+Other studies, MZL Tier 2, 51
32 31
```
33 32
34 33
papers/tanakaFrequentIncidenceSomatic1992.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/tiacciBRAFMutationsHairycell2011a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/tiacciPervasiveMutationsJAKSTAT2018b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2, 9
28 27
This study, New Tier 2, 9
29 28
New Tier 2, PMBL Tier 2, 9
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 75
30
+Other studies, PMBL Tier 2, 73
32 31
```
33 32
34 33
papers/troenNOTCH2MutationsMarginal2008.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, DLBCL Tier 2,
30
-Other studies, DLBCL Tier 1, 128
29
+Other studies, DLBCL Tier 1, 127
31 30
Other studies, DLBCL Tier 2, 198
32 31
```
33 32
papers/vandenbrandRecurrentMutationsGenes2017.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, MZL Tier 1,
27
-This study, MZL Tier 2, 2
28 27
This study, New Tier 2, 2
29 28
New Tier 2, MZL Tier 2, 2
30 29
Other studies, MZL Tier 1, 42
31
-Other studies, MZL Tier 2, 74
30
+Other studies, MZL Tier 2, 72
32 31
```
33 32
34 33
papers/viganoSomaticIL4RMutations2018b.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, PMBL Tier 2,
30
-Other studies, PMBL Tier 1, 76
29
+Other studies, PMBL Tier 1, 75
31 30
Other studies, PMBL Tier 2, 82
32 31
```
33 32
papers/wenigerMutationsTumorSuppressor2006a.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, PMBL Tier 1, 1
27
-This study, PMBL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, PMBL Tier 2, 1
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 75
30
+Other studies, PMBL Tier 2, 81
32 31
```
33 32
34 33
papers/wienandGenomicAnalysesFlowsorted2019b.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 4
26 26
New Tier 1, PMBL Tier 1, 4
27
-This study, PMBL Tier 2, 3
28 27
This study, New Tier 2, 3
29 28
New Tier 2, PMBL Tier 2, 3
30
-Other studies, PMBL Tier 1, 76
31
-Other studies, PMBL Tier 2, 82
29
+Other studies, PMBL Tier 1, 72
30
+Other studies, PMBL Tier 2, 79
32 31
```
33 32
34 33
papers/wildaInactivationARFMDM2p53Pathway2004.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, BL Tier 1, 1
27
-This study, BL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, BL Tier 2,
30
-Other studies, BL Tier 1, 29
29
+Other studies, BL Tier 1, 28
31 30
Other studies, BL Tier 2, 157
32 31
```
33 32
papers/wuGeneticHeterogeneityPrimary2016.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 1
26 26
New Tier 1, MCL Tier 1, 1
27
-This study, MCL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, MCL Tier 2,
30
-Other studies, MCL Tier 1, 23
29
+Other studies, MCL Tier 1, 22
31 30
Other studies, MCL Tier 2, 46
32 31
```
33 32
papers/yanBCRTLRSignaling2012a.md
... ...
@@ -24,10 +24,9 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, MZL Tier 1, 2
27
-This study, MZL Tier 2,
28 27
This study, New Tier 2,
29 28
New Tier 2, MZL Tier 2,
30
-Other studies, MZL Tier 1, 42
29
+Other studies, MZL Tier 1, 40
31 30
Other studies, MZL Tier 2, 74
32 31
```
33 32
papers/yildizActivatingSTAT6Mutations2015c.md
... ...
@@ -8,8 +8,8 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|FL|1||
12 11
|DLBCL|1||
12
+|FL|1||
13 13
```mermaid
14 14
---
15 15
config:
... ...
@@ -25,17 +25,16 @@ config:
25 25
sankey-beta
26 26
This study, New Tier 1, 1
27 27
New Tier 1, FL Tier 1, 1
28
-This study, FL Tier 2,
29 28
This study, New Tier 2,
30 29
New Tier 2, FL Tier 2,
31
-Other studies, FL Tier 1, 66
30
+Other studies, FL Tier 1, 65
32 31
Other studies, FL Tier 2, 50
33 32
```
34 33
35 34
36 35
## Novel genes reported in this study
37 36
38
-|New gene|FL tier|DLBCL tier|
37
+|New gene|DLBCL tier|FL tier|
39 38
|:-|:-:|:-:|
40 39
|[STAT6](STAT6)|1 |1 |
41 40
papers/zhangGeneticHeterogeneityDiffuse2013.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 11
26 26
New Tier 1, DLBCL Tier 1, 11
27
-This study, DLBCL Tier 2, 8
28 27
This study, New Tier 2, 8
29 28
New Tier 2, DLBCL Tier 2, 8
30
-Other studies, DLBCL Tier 1, 128
31
-Other studies, DLBCL Tier 2, 198
29
+Other studies, DLBCL Tier 1, 117
30
+Other studies, DLBCL Tier 2, 190
32 31
```
33 32
34 33
papers/zhangGenomicLandscapeMantle2014.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1, 2
26 26
New Tier 1, MCL Tier 1, 2
27
-This study, MCL Tier 2, 26
28 27
This study, New Tier 2, 26
29 28
New Tier 2, MCL Tier 2, 26
30
-Other studies, MCL Tier 1, 23
31
-Other studies, MCL Tier 2, 46
29
+Other studies, MCL Tier 1, 21
30
+Other studies, MCL Tier 2, 20
32 31
```
33 32
34 33
papers/zhouSporadicEndemicBurkitt2019.md
... ...
@@ -24,11 +24,10 @@ config:
24 24
sankey-beta
25 25
This study, New Tier 1,
26 26
New Tier 1, BL Tier 1,
27
-This study, BL Tier 2, 1
28 27
This study, New Tier 2, 1
29 28
New Tier 2, BL Tier 2, 1
30 29
Other studies, BL Tier 1, 29
31
-Other studies, BL Tier 2, 157
30
+Other studies, BL Tier 2, 156
32 31
```
33 32
34 33