PMBL_Tier1.md
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-|Gene|Status| First PMBL study | Other lists |
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-|:-:|:-:|:-:|:----|
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-|[ACTB](ACTB)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[ARID1A](ARID1A)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
5
-|[ARID5B](ARID5B)|PMBL Tier 1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
6
-|[B2M](B2M)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|
7
-|[BIRC6](BIRC6)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
8
-|[BTG1](BTG1)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
9
-|[CD58](CD58)|PMBL Tier 1|[Schneider et al](papers/schneiderAlterationsCD58Gene2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
10
-|[CD83](CD83)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
11
-|[CIITA](CIITA)|PMBL Tier 1|[Mottok et al](papers/mottokGenomicAlterationsCIITA2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
12
-|[CISH](CISH)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
13
-|[CREBBP](CREBBP)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
14
-|[CSF2RB](CSF2RB)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)||
15
-|[DDX3X](DDX3X)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
16
-|[DTX1](DTX1)|PMBL Tier 1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
17
-|[DUSP2](DUSP2)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
18
-|[EBF1](EBF1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
19
-|[EEF1A1](EEF1A1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
20
-|[EZH2](EZH2)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
21
-|[GNA13](GNA13)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
22
-|[HIST1H1B](HIST1H1B)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
23
-|[HIST1H1E](HIST1H1E)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
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-|[HLA-B](HLA-B)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[IL4R](IL4R)|PMBL Tier 1|[Vigano et al](papers/viganoSomaticIL4RMutations2018)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[IRF8](IRF8)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
27
-|[ITPKB](ITPKB)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
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-|[JAK1](JAK1)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
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-|[KMT2C](KMT2C)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|
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-|[LTB](LTB)|PMBL Tier 1|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
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-|[MAP3K14](MAP3K14)|PMBL Tier 1|[Otto et al](papers/ottoGeneticLesionsTRAF32012)|[MZL](MZL_genes#tier-1-mzl-genes)|
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-|[MS4A1](MS4A1)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[NFKBIA](NFKBIA)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
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-|[NFKBIE](NFKBIE)|PMBL Tier 1|[Mansouri et al](papers/mansouriFrequentNFKBIEDeletions2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
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-|[PIM1](PIM1)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
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-|[PIM2](PIM2)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[PTPN1](PTPN1)|PMBL Tier 1|[Gunawardana et al](papers/gunawardanaRecurrentSomaticMutations2014)||
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-|[SGK1](SGK1)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
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-|[SOCS1](SOCS1)|PMBL Tier 1|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[SPEN](SPEN)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[STAT6](STAT6)|PMBL Tier 1|[Ritz et al](papers/ritzRecurrentMutationsSTAT62009)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[TNFAIP3](TNFAIP3)|PMBL Tier 1|[Schmitz et al](papers/schmitzTNFAIP3A20Tumor2009)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[TP53](TP53)|PMBL Tier 1|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[TRAF3](TRAF3)|PMBL Tier 1|[Otto et al](papers/ottoGeneticLesionsTRAF32012)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[UBE2A](UBE2A)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[WEE1](WEE1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[XPO1](XPO1)|PMBL Tier 1|[Jardin et al](papers/jardinRecurrentMutationsExportin2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[ZFP36L1](ZFP36L1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
PMBL_Tier2.md
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-|Gene|Status| First PMBL study | Other lists |
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-|:-:|:-:|:-:|:----|
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-|[ABCA13](ABCA13)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[MZL](MZL_genes#tier-2-mzl-genes)|
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-|[ACTG1](ACTG1)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
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-|[AKAP6](AKAP6)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
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-|[ARIH2](ARIH2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
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-|[AXDND1](AXDND1)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
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-|[BCL2](BCL2)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
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-|[BCL7A](BCL7A)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[BIRC3](BIRC3)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[CCND3](CCND3)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[CDH2](CDH2)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)||
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-|[CDH5](CDH5)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
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-|[CDKN2A](CDKN2A)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
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-|[CHD8](CHD8)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
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-|[CXCR5](CXCR5)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
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-|[DGKB](DGKB)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
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-|[DMD](DMD)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
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-|[DNAH12](DNAH12)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)||
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-|[EGR1](EGR1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
21
-|[EPHA7](EPHA7)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
22
-|[ETS1](ETS1)|PMBL Tier 2||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
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-|[EWSR1](EWSR1)|PMBL Tier 2||[MCL](MCL_genes#tier-1-mcl-genes)|
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-|[EZR](EZR)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)||
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-|[FAS](FAS)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
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-|[FAT1](FAT1)|PMBL Tier 2||[MZL](MZL_genes#tier-1-mzl-genes)|
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-|[FAT4](FAT4)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-2-mcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
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-|[FOXO1](FOXO1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
29
-|[GCSAM](GCSAM)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
30
-|[GPR126](GPR126)|PMBL Tier 2|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006)||
31
-|[HECW2](HECW2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
32
-|[HELLS](HELLS)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
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-|[HIST1H1C](HIST1H1C)|PMBL Tier 2||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
34
-|[HIST1H1D](HIST1H1D)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
35
-|[HIST1H2BC](HIST1H2BC)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
36
-|[HIST1H3B](HIST1H3B)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
37
-|[HIST1H4C](HIST1H4C)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
38
-|[HIST1H4E](HIST1H4E)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
39
-|[HIST1H4J](HIST1H4J)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-2-bl-genes)|
40
-|[HLA-A](HLA-A)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
41
-|[HLA-C](HLA-C)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
42
-|[HRNR](HRNR)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
43
-|[IGLL5](IGLL5)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
44
-|[IKBKB](IKBKB)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
45
-|[IL13RA1](IL13RA1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
46
-|[IL1RAPL2](IL1RAPL2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
47
-|[IRF2BP2](IRF2BP2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
48
-|[IRF4](IRF4)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
49
-|[ITGB2](ITGB2)|PMBL Tier 2|||
50
-|[ITPR3](ITPR3)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[BL](BL_genes#tier-3-bl-genes)|
51
-|[JUNB](JUNB)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
52
-|[KLF2](KLF2)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
53
-|[KMT2D](KMT2D)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
54
-|[LIMD2](LIMD2)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
55
-|[LPHN3](LPHN3)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
56
-|[LRRN3](LRRN3)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
57
-|[MAGEC2](MAGEC2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
58
-|[MCL1](MCL1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
59
-|[MFHAS1](MFHAS1)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)||
60
-|[MPDZ](MPDZ)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
61
-|[MYB](MYB)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
62
-|[MYC](MYC)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
63
-|[NCOR2](NCOR2)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
64
-|[NEK1](NEK1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
65
-|[NFKB2](NFKB2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
66
-|[NSD2](NSD2)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
67
-|[NUP214](NUP214)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
68
-|[OR13C2](OR13C2)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
69
-|[OSBPL10](OSBPL10)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
70
-|[P2RY8](P2RY8)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
71
-|[PCBP1](PCBP1)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
72
-|[PCDH7](PCDH7)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
73
-|[PCLO](PCLO)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
74
-|[PHIP](PHIP)|PMBL Tier 2|||
75
-|[PRKDC](PRKDC)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
76
-|[PRUNE2](PRUNE2)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
77
-|[PTPRD](PTPRD)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
78
-|[RANBP2](RANBP2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
79
-|[RBM38](RBM38)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)||
80
-|[RDH12](RDH12)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
81
-|[RELN](RELN)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
82
-|[RFTN1](RFTN1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
83
-|[RGS1](RGS1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
84
-|[RHOA](RHOA)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
85
-|[S1PR2](S1PR2)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
86
-|[SCN9A](SCN9A)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
87
-|[SENP7](SENP7)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
88
-|[SETD5](SETD5)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
89
-|[SETDB1](SETDB1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
90
-|[SIAH2](SIAH2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
91
-|[SIN3A](SIN3A)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
92
-|[SMAD3](SMAD3)|PMBL Tier 2|||
93
-|[SMARCA2](SMARCA2)|PMBL Tier 2|||
94
-|[SMARCA4](SMARCA4)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
95
-|[STAT3](STAT3)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
96
-|[STAT5B](STAT5B)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
97
-|[STRAP](STRAP)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
98
-|[TAP1](TAP1)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
99
-|[TBC1D15](TBC1D15)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
100
-|[TBL1XR1](TBL1XR1)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
101
-|[TCF3](TCF3)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
102
-|[TET3](TET3)|PMBL Tier 2|||
103
-|[TICRR](TICRR)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
104
-|[TMSB4X](TMSB4X)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
105
-|[TNFRSF1B](TNFRSF1B)|PMBL Tier 2|||
106
-|[TNIP1](TNIP1)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
107
-|[TRIP11](TRIP11)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
108
-|[UBR5](UBR5)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
109
-|[UNC5C](UNC5C)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
110
-|[VMP1](VMP1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
111
-|[VPS13B](VPS13B)|PMBL Tier 2|||
112
-|[WDR87](WDR87)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
113
-|[ZCCHC11](ZCCHC11)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
114
-|[ZNF217](ZNF217)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
PMBL_Tier3.md
... ...
@@ -1,4 +0,0 @@
1
-|Gene|Status| First PMBL study | Other lists |
2
-|:-:|:-:|:-:|:----|
3
-
4
-# References
pages/PMBL_Tier1.md
... ...
@@ -0,0 +1,48 @@
1
+|Gene|Status| First PMBL study | Other lists |
2
+|:-:|:-:|:-:|:----|
3
+|[ACTB](ACTB)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
4
+|[ARID1A](ARID1A)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
5
+|[ARID5B](ARID5B)|PMBL Tier 1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
6
+|[B2M](B2M)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|
7
+|[BIRC6](BIRC6)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
8
+|[BTG1](BTG1)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
9
+|[CD58](CD58)|PMBL Tier 1|[Schneider et al](papers/schneiderAlterationsCD58Gene2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
10
+|[CD83](CD83)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
11
+|[CIITA](CIITA)|PMBL Tier 1|[Mottok et al](papers/mottokGenomicAlterationsCIITA2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
12
+|[CISH](CISH)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
13
+|[CREBBP](CREBBP)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
14
+|[CSF2RB](CSF2RB)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)||
15
+|[DDX3X](DDX3X)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
16
+|[DTX1](DTX1)|PMBL Tier 1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
17
+|[DUSP2](DUSP2)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
18
+|[EBF1](EBF1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
19
+|[EEF1A1](EEF1A1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
20
+|[EZH2](EZH2)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
21
+|[GNA13](GNA13)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
22
+|[HIST1H1B](HIST1H1B)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
23
+|[HIST1H1E](HIST1H1E)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
24
+|[HLA-B](HLA-B)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
25
+|[IL4R](IL4R)|PMBL Tier 1|[Vigano et al](papers/viganoSomaticIL4RMutations2018)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
26
+|[IRF8](IRF8)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
27
+|[ITPKB](ITPKB)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
28
+|[JAK1](JAK1)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
29
+|[KMT2C](KMT2C)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-2-mcl-genes)|
30
+|[LTB](LTB)|PMBL Tier 1|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
31
+|[MAP3K14](MAP3K14)|PMBL Tier 1|[Otto et al](papers/ottoGeneticLesionsTRAF32012)|[MZL](MZL_genes#tier-1-mzl-genes)|
32
+|[MS4A1](MS4A1)|PMBL Tier 1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
33
+|[NFKBIA](NFKBIA)|PMBL Tier 1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
34
+|[NFKBIE](NFKBIE)|PMBL Tier 1|[Mansouri et al](papers/mansouriFrequentNFKBIEDeletions2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
35
+|[PIM1](PIM1)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
36
+|[PIM2](PIM2)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
37
+|[PTPN1](PTPN1)|PMBL Tier 1|[Gunawardana et al](papers/gunawardanaRecurrentSomaticMutations2014)||
38
+|[SGK1](SGK1)|PMBL Tier 1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
39
+|[SOCS1](SOCS1)|PMBL Tier 1|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
40
+|[SPEN](SPEN)|PMBL Tier 1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
41
+|[STAT6](STAT6)|PMBL Tier 1|[Ritz et al](papers/ritzRecurrentMutationsSTAT62009)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
42
+|[TNFAIP3](TNFAIP3)|PMBL Tier 1|[Schmitz et al](papers/schmitzTNFAIP3A20Tumor2009)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
43
+|[TP53](TP53)|PMBL Tier 1|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
44
+|[TRAF3](TRAF3)|PMBL Tier 1|[Otto et al](papers/ottoGeneticLesionsTRAF32012)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
45
+|[UBE2A](UBE2A)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
46
+|[WEE1](WEE1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
47
+|[XPO1](XPO1)|PMBL Tier 1|[Jardin et al](papers/jardinRecurrentMutationsExportin2016)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
48
+|[ZFP36L1](ZFP36L1)|PMBL Tier 1|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
pages/PMBL_Tier2.md
... ...
@@ -0,0 +1,114 @@
1
+|Gene|Status| First PMBL study | Other lists |
2
+|:-:|:-:|:-:|:----|
3
+|[ABCA13](ABCA13)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[MZL](MZL_genes#tier-2-mzl-genes)|
4
+|[ACTG1](ACTG1)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
5
+|[AKAP6](AKAP6)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
6
+|[ARIH2](ARIH2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
7
+|[AXDND1](AXDND1)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
8
+|[BCL2](BCL2)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
9
+|[BCL7A](BCL7A)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
10
+|[BIRC3](BIRC3)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
11
+|[CCND3](CCND3)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
12
+|[CDH2](CDH2)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)||
13
+|[CDH5](CDH5)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
14
+|[CDKN2A](CDKN2A)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
15
+|[CHD8](CHD8)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
16
+|[CXCR5](CXCR5)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
17
+|[DGKB](DGKB)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
18
+|[DMD](DMD)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
19
+|[DNAH12](DNAH12)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)||
20
+|[EGR1](EGR1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
21
+|[EPHA7](EPHA7)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
22
+|[ETS1](ETS1)|PMBL Tier 2||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
23
+|[EWSR1](EWSR1)|PMBL Tier 2||[MCL](MCL_genes#tier-1-mcl-genes)|
24
+|[EZR](EZR)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)||
25
+|[FAS](FAS)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
26
+|[FAT1](FAT1)|PMBL Tier 2||[MZL](MZL_genes#tier-1-mzl-genes)|
27
+|[FAT4](FAT4)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-2-mcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
28
+|[FOXO1](FOXO1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
29
+|[GCSAM](GCSAM)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
30
+|[GPR126](GPR126)|PMBL Tier 2|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006)||
31
+|[HECW2](HECW2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
32
+|[HELLS](HELLS)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
33
+|[HIST1H1C](HIST1H1C)|PMBL Tier 2||[BL](BL_genes#tier-3-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
34
+|[HIST1H1D](HIST1H1D)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
35
+|[HIST1H2BC](HIST1H2BC)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
36
+|[HIST1H3B](HIST1H3B)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
37
+|[HIST1H4C](HIST1H4C)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
38
+|[HIST1H4E](HIST1H4E)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
39
+|[HIST1H4J](HIST1H4J)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[BL](BL_genes#tier-2-bl-genes)|
40
+|[HLA-A](HLA-A)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
41
+|[HLA-C](HLA-C)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
42
+|[HRNR](HRNR)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
43
+|[IGLL5](IGLL5)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
44
+|[IKBKB](IKBKB)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
45
+|[IL13RA1](IL13RA1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
46
+|[IL1RAPL2](IL1RAPL2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
47
+|[IRF2BP2](IRF2BP2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
48
+|[IRF4](IRF4)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
49
+|[ITGB2](ITGB2)|PMBL Tier 2|||
50
+|[ITPR3](ITPR3)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[BL](BL_genes#tier-3-bl-genes)|
51
+|[JUNB](JUNB)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
52
+|[KLF2](KLF2)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
53
+|[KMT2D](KMT2D)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
54
+|[LIMD2](LIMD2)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
55
+|[LPHN3](LPHN3)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
56
+|[LRRN3](LRRN3)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
57
+|[MAGEC2](MAGEC2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
58
+|[MCL1](MCL1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
59
+|[MFHAS1](MFHAS1)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)||
60
+|[MPDZ](MPDZ)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
61
+|[MYB](MYB)|PMBL Tier 2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
62
+|[MYC](MYC)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
63
+|[NCOR2](NCOR2)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[BL](BL_genes#tier-2-bl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
64
+|[NEK1](NEK1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
65
+|[NFKB2](NFKB2)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
66
+|[NSD2](NSD2)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-3-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
67
+|[NUP214](NUP214)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
68
+|[OR13C2](OR13C2)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
69
+|[OSBPL10](OSBPL10)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
70
+|[P2RY8](P2RY8)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
71
+|[PCBP1](PCBP1)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
72
+|[PCDH7](PCDH7)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
73
+|[PCLO](PCLO)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
74
+|[PHIP](PHIP)|PMBL Tier 2|||
75
+|[PRKDC](PRKDC)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
76
+|[PRUNE2](PRUNE2)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
77
+|[PTPRD](PTPRD)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
78
+|[RANBP2](RANBP2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
79
+|[RBM38](RBM38)|PMBL Tier 2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019)||
80
+|[RDH12](RDH12)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
81
+|[RELN](RELN)|PMBL Tier 2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
82
+|[RFTN1](RFTN1)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MZL](MZL_genes#tier-2-mzl-genes)|
83
+|[RGS1](RGS1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
84
+|[RHOA](RHOA)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
85
+|[S1PR2](S1PR2)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-2-fl-genes)|
86
+|[SCN9A](SCN9A)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
87
+|[SENP7](SENP7)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
88
+|[SETD5](SETD5)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
89
+|[SETDB1](SETDB1)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
90
+|[SIAH2](SIAH2)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
91
+|[SIN3A](SIN3A)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
92
+|[SMAD3](SMAD3)|PMBL Tier 2|||
93
+|[SMARCA2](SMARCA2)|PMBL Tier 2|||
94
+|[SMARCA4](SMARCA4)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
95
+|[STAT3](STAT3)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes)|
96
+|[STAT5B](STAT5B)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
97
+|[STRAP](STRAP)|PMBL Tier 2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)||
98
+|[TAP1](TAP1)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
99
+|[TBC1D15](TBC1D15)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
100
+|[TBL1XR1](TBL1XR1)|PMBL Tier 2||[BL](BL_genes#tier-2-bl-genes), [DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes), [MZL](MZL_genes#tier-1-mzl-genes)|
101
+|[TCF3](TCF3)|PMBL Tier 2||[BL](BL_genes#tier-1-bl-genes)|
102
+|[TET3](TET3)|PMBL Tier 2|||
103
+|[TICRR](TICRR)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)||
104
+|[TMSB4X](TMSB4X)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-1-dlbcl-genes), [FL](FL_genes#tier-1-fl-genes)|
105
+|[TNFRSF1B](TNFRSF1B)|PMBL Tier 2|||
106
+|[TNIP1](TNIP1)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
107
+|[TRIP11](TRIP11)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-3-dlbcl-genes)|
108
+|[UBR5](UBR5)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes), [MCL](MCL_genes#tier-1-mcl-genes)|
109
+|[UNC5C](UNC5C)|PMBL Tier 2||[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
110
+|[VMP1](VMP1)|PMBL Tier 2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019)||
111
+|[VPS13B](VPS13B)|PMBL Tier 2|||
112
+|[WDR87](WDR87)|PMBL Tier 2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)||
113
+|[ZCCHC11](ZCCHC11)|PMBL Tier 2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018)||
114
+|[ZNF217](ZNF217)|PMBL Tier 2|[Reichel et al](papers/reichelFlowSortingExome2015)|[DLBCL](DLBCL_genes#tier-2-dlbcl-genes)|
pages/PMBL_Tier3.md
... ...
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1
+|Gene|Status| First PMBL study | Other lists |
2
+|:-:|:-:|:-:|:----|
3
+
4
+# References