e25742f18e19cfddce197e808a5f2e7128ccf005
APOA5.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +[[include:table1_APOA5.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
APP.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +[[include:table1_APP.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ARAP2.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in DLBCL not firmly established[@morinMutationalStructuralAnalysis2013]| |
|
| 16 | +[[include:table1_ARAP2.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ARHGAP20.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]| |
|
| 16 | +[[include:table1_ARHGAP20.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
ARHGEF1.md
| ... | ... | @@ -10,9 +10,7 @@ nocite: | |
| 10 | 10 | |
| 11 | 11 | ## Relevance tier by entity |
| 12 | 12 | |
| 13 | -|Entity|Tier|Description | |
|
| 14 | -|:------:|:----:|--------------------------------------| |
|
| 15 | -| |2 |relevance in BL not firmly established[@muppidiLossSignalingGa132014]| |
|
| 13 | +[[include:table1_ARHGEF1.md]] |
|
| 16 | 14 | |
| 17 | 15 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 18 | 16 |
ARHGEF15.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]| |
|
| 16 | +[[include:table1_ARHGEF15.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
ARHGEF17.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]| |
|
| 16 | +[[include:table1_ARHGEF17.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
ARID1B.md
| ... | ... | @@ -11,10 +11,7 @@ nocite: | |
| 11 | 11 | |
| 12 | 12 | ## Relevance tier by entity |
| 13 | 13 | |
| 14 | -|Entity|Tier|Description | |
|
| 15 | -|:------:|:----:|-----------------------------------------| |
|
| 16 | -| |3 |Retired, Failed QC[@reddyGeneticFunctionalDrivers2017]| |
|
| 17 | -| |2 |relevance in MCL not firmly established | |
|
| 14 | +[[include:table1_ARID1B.md]] |
|
| 18 | 15 | |
| 19 | 16 | ## Warnings |
| 20 | 17 |
ARID5B.md
| ... | ... | @@ -11,10 +11,7 @@ nocite: | |
| 11 | 11 | |
| 12 | 12 | ## Relevance tier by entity |
| 13 | 13 | |
| 14 | -|Entity|Tier|Description | |
|
| 15 | -|:------:|:----:|-----------------------------------------| |
|
| 16 | -||1|high-confidence PMBL/cHL/GZL gene[@gomezUltraDeepSequencingReveals2023]| |
|
| 17 | -| |2 |relevance in DLBCL not firmly established[@reddyGeneticFunctionalDrivers2017;@drevalRevisitingReddyDLBCL2023; @arthurGenomewideDiscoverySomatic2018]| |
|
| 14 | +[[include:table1_ARID5B.md]] |
|
| 18 | 15 | |
| 19 | 16 | ## Warnings |
| 20 | 17 |
ARIH2.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in PMBL/cHL/GZL not firmly established[@reichelFlowSortingExome2015]| |
|
| 16 | +[[include:table1_ARIH2.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
ASXL3.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||2|relevance in DLBCL not firmly established[@albuquerqueEnhancingKnowledgeDiscovery2017]| |
|
| 16 | +[[include:table1_ASXL3.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ATIC.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +[[include:table1_ATIC.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ATM.md
| ... | ... | @@ -15,11 +15,7 @@ Mutations in this gene were first described in MZL by Braggio et al.[@braggioGen |
| 15 | 15 | |
| 16 | 16 | ## Relevance tier by entity |
| 17 | 17 | |
| 18 | -|Entity|Tier|Description | |
|
| 19 | -|:------:|:----:|--------------------------| |
|
| 20 | -||1|high-confidence MZL gene[@braggioGenomicAnalysisMarginal2012]| |
|
| 21 | -| |1 |high-confidence DLBCL gene[@reddyGeneticFunctionalDrivers2017; @arthurGenomewideDiscoverySomatic2018]| |
|
| 22 | -| |1 |high-confidence MCL gene [@beaLandscapeSomaticMutations2013]| |
|
| 18 | +[[include:table1_ATM.md]] |
|
| 23 | 19 | |
| 24 | 20 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 25 | 21 |
ATP1A2.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +[[include:table1_ATP1A2.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ATP2A3.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +[[include:table1_ATP2A3.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ATP2C2.md
| ... | ... | @@ -16,9 +16,7 @@ Due to [minimal support](ATP2C2#representative-mutation) in the original primary |
| 16 | 16 | |
| 17 | 17 | ## Relevance tier by entity |
| 18 | 18 | |
| 19 | -|Entity|Tier|Description | |
|
| 20 | -|:------:|:----:|--------------------------------------| |
|
| 21 | -| |3 |Retired, Failed QC[@loveGeneticLandscapeMutations2012]| |
|
| 19 | +[[include:table1_ATP2C2.md]] |
|
| 22 | 20 | |
| 23 | 21 | ## Warnings |
| 24 | 22 |
ATP6AP1.md
| ... | ... | @@ -10,9 +10,7 @@ nocite: | |
| 10 | 10 | |
| 11 | 11 | ## Relevance tier by entity |
| 12 | 12 | |
| 13 | -|Entity|Tier|Description | |
|
| 14 | -|:------:|:----:|-----------------------| |
|
| 15 | -| |1 |high-confidence FL gene[@okosunRecurrentMTORC1activatingRRAGC2016]| |
|
| 13 | +[[include:table1_ATP6AP1.md]] |
|
| 16 | 14 | |
| 17 | 15 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 18 | 16 |
ATP6V0A1.md
| ... | ... | @@ -13,9 +13,7 @@ nocite: | |
| 13 | 13 | |
| 14 | 14 | ## Relevance tier by entity |
| 15 | 15 | |
| 16 | -|Entity|Tier|Description| |
|
| 17 | -|:------:|:----:|--------------------------------------| |
|
| 18 | -||3|relevance in DLBCL not firmly established[@fanComprehensiveCharacterizationDriver2020]| |
|
| 16 | +[[include:table1_ATP6V0A1.md]] |
|
| 19 | 17 | |
| 20 | 18 | |
| 21 | 19 |
ATP6V1A.md
| ... | ... | @@ -14,9 +14,7 @@ Mutations in this gene were first described in DLBCL in 2021 by Hübschmann et a |
| 14 | 14 | |
| 15 | 15 | ## Relevance tier by entity |
| 16 | 16 | |
| 17 | -|Entity|Tier|Description | |
|
| 18 | -|:------:|:----:|--------------------------------------| |
|
| 19 | -| |2 |relevance in FL not firmly established[@hubschmannMutationalMechanismsShaping2021]| |
|
| 17 | +[[include:table1_ATP6V1A.md]] |
|
| 20 | 18 | |
| 21 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 22 | 20 |