APOA5.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]|
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+[[include:table1_APOA5.md]]
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APP.md
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@@ -13,9 +13,7 @@ nocite: |
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]|
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+[[include:table1_APP.md]]
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ARAP2.md
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@@ -13,9 +13,7 @@ nocite: |
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier2.png)|2|relevance in DLBCL not firmly established[@morinMutationalStructuralAnalysis2013]|
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+[[include:table1_ARAP2.md]]
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ARHGAP20.md
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@@ -13,9 +13,7 @@ nocite: |
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![MZL](images/icons/MZL_tier2.png)|2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]|
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+[[include:table1_ARHGAP20.md]]
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
ARHGEF1.md
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|--------------------------------------|
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-|![BL](images/icons/BL_tier2.png) |2 |relevance in BL not firmly established[@muppidiLossSignalingGa132014]|
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+[[include:table1_ARHGEF1.md]]
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
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ARHGEF15.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![MZL](images/icons/MZL_tier2.png)|2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]|
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+[[include:table1_ARHGEF15.md]]
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
ARHGEF17.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![MZL](images/icons/MZL_tier2.png)|2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]|
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+[[include:table1_ARHGEF17.md]]
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
ARID1B.md
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@@ -11,10 +11,7 @@ nocite: |
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|-----------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier2.png) |3 |Retired, Failed QC[@reddyGeneticFunctionalDrivers2017]|
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-|![MCL](images/icons/MCL_tier2.png) |2 |relevance in MCL not firmly established |
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+[[include:table1_ARID1B.md]]
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## Warnings
20 17
ARID5B.md
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|-----------------------------------------|
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-|![PMBL](images/icons/PMBL_tier1.png)|1|high-confidence PMBL/cHL/GZL gene[@gomezUltraDeepSequencingReveals2023]|
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-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established[@reddyGeneticFunctionalDrivers2017;@drevalRevisitingReddyDLBCL2023; @arthurGenomewideDiscoverySomatic2018]|
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+[[include:table1_ARID5B.md]]
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## Warnings
20 17
ARIH2.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established[@reichelFlowSortingExome2015]|
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+[[include:table1_ARIH2.md]]
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
ASXL3.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier2.png)|2|relevance in DLBCL not firmly established[@albuquerqueEnhancingKnowledgeDiscovery2017]|
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+[[include:table1_ASXL3.md]]
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ATIC.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]|
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ATM.md
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@@ -15,11 +15,7 @@ Mutations in this gene were first described in MZL by Braggio et al.[@braggioGen
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|--------------------------|
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-|![MZL](images/icons/MZL_tier1.png)|1|high-confidence MZL gene[@braggioGenomicAnalysisMarginal2012]|
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-|![DLBCL](images/icons/DLBCL_tier1.png) |1 |high-confidence DLBCL gene[@reddyGeneticFunctionalDrivers2017; @arthurGenomewideDiscoverySomatic2018]|
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-|![MCL](images/icons/MCL_tier1.png) |1 |high-confidence MCL gene [@beaLandscapeSomaticMutations2013]|
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
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ATP1A2.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]|
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+[[include:table1_ATP1A2.md]]
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ATP2A3.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@zhangGeneticHeterogeneityDiffuse2013]|
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ATP2C2.md
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@@ -16,9 +16,7 @@ Due to [minimal support](ATP2C2#representative-mutation) in the original primary
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|--------------------------------------|
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-|![BL](images/icons/BL_tier2.png) |3 |Retired, Failed QC[@loveGeneticLandscapeMutations2012]|
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+[[include:table1_ATP2C2.md]]
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## Warnings
24 22
ATP6AP1.md
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|-----------------------|
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-|![FL](images/icons/FL_tier1.png) |1 |high-confidence FL gene[@okosunRecurrentMTORC1activatingRRAGC2016]|
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
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ATP6V0A1.md
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## Relevance tier by entity
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-|Entity|Tier|Description|
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-|:------:|:----:|--------------------------------------|
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-|![DLBCL](images/icons/DLBCL_tier3.png)|3|relevance in DLBCL not firmly established[@fanComprehensiveCharacterizationDriver2020]|
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ATP6V1A.md
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@@ -14,9 +14,7 @@ Mutations in this gene were first described in DLBCL in 2021 by Hübschmann et a
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## Relevance tier by entity
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-|Entity|Tier|Description |
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-|:------:|:----:|--------------------------------------|
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-|![FL](images/icons/FL_tier2.png) |2 |relevance in FL not firmly established[@hubschmannMutationalMechanismsShaping2021]|
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## Mutation incidence in large patient cohorts (GAMBL reanalysis)
22 20