papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md
... ...
@@ -1,44 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @albuquerqueEnhancingKnowledgeDiscovery2017a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|3|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 3
26
-New Tier 1, DLBCL Tier 1, 3
27
-This study, New Tier 2, 0
28
-New Tier 2, DLBCL Tier 2, 0
29
-All other DLBCL studies, DLBCL Tier 1, 125
30
-All other DLBCL studies, DLBCL Tier 2, 198
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[BTK](../BTK)|1 |
39
-|[TET2](../TET2)|1 |
40
-|[TMSB4X](../TMSB4X)|1 |
41
-
42
-
43
-# Details
44
-
papers/jardinRecurrentMutationsExportin2016a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @jardinRecurrentMutationsExportin2016a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, PMBL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, PMBL Tier 2, 0
29
-All other PMBL studies, PMBL Tier 1, 75
30
-All other PMBL studies, PMBL Tier 2, 82
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[XPO1](../XPO1)|1 |
39
-
40
-
41
-# Details
42
-
papers/mottokIntegrativeGenomicAnalysis2019b.md
... ...
@@ -1,66 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @mottokIntegrativeGenomicAnalysis2019b
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|6|15|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 6
26
-New Tier 1, PMBL Tier 1, 6
27
-This study, New Tier 2, 15
28
-New Tier 2, PMBL Tier 2, 15
29
-All other PMBL studies, PMBL Tier 1, 70
30
-All other PMBL studies, PMBL Tier 2, 67
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[CISH](../CISH)|1 |
39
-|[DDX3X](../DDX3X)|1 |
40
-|[EZH2](../EZH2)|1 |
41
-|[IRF8](../IRF8)|1 |
42
-|[JAK1](../JAK1)|1 |
43
-|[MS4A1](../MS4A1)|1 |
44
-
45
-### Tier 2
46
-|New gene|PMBL tier|
47
-|:-|:-:|
48
-|[CXCR5](../CXCR5)|2 |
49
-|[EPHA7](../EPHA7)|2 |
50
-|[GCSAM](../GCSAM)|2 |
51
-|[HIST1H2BC](../HIST1H2BC)|2 |
52
-|[HIST1H4E](../HIST1H4E)|2 |
53
-|[HIST1H4J](../HIST1H4J)|2 |
54
-|[IL13RA1](../IL13RA1)|2 |
55
-|[IL1RAPL2](../IL1RAPL2)|2 |
56
-|[IRF2BP2](../IRF2BP2)|2 |
57
-|[IRF4](../IRF4)|2 |
58
-|[JUNB](../JUNB)|2 |
59
-|[MAGEC2](../MAGEC2)|2 |
60
-|[NFKB2](../NFKB2)|2 |
61
-|[RGS1](../RGS1)|2 |
62
-|[VMP1](../VMP1)|2 |
63
-
64
-
65
-# Details
66
-
papers/spinaGeneticsNodalMarginal2016b.md
... ...
@@ -1,76 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @spinaGeneticsNodalMarginal2016b
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|MZL|8|23|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 8
26
-New Tier 1, MZL Tier 1, 8
27
-This study, New Tier 2, 23
28
-New Tier 2, MZL Tier 2, 23
29
-All other MZL studies, MZL Tier 1, 34
30
-All other MZL studies, MZL Tier 2, 51
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|MZL tier|
37
-|:-|:-:|
38
-|[BCL10](../BCL10)|1 |
39
-|[FAS](../FAS)|1 |
40
-|[FAT1](../FAT1)|1 |
41
-|[ID3](../ID3)|1 |
42
-|[NCOR2](../NCOR2)|1 |
43
-|[NOL9](../NOL9)|1 |
44
-|[PTPRD](../PTPRD)|1 |
45
-|[TNFRSF14](../TNFRSF14)|1 |
46
-
47
-### Tier 2
48
-|New gene|MZL tier|
49
-|:-|:-:|
50
-|[ABCA13](../ABCA13)|2 |
51
-|[ACTG1](../ACTG1)|2 |
52
-|[ADD2](../ADD2)|2 |
53
-|[AMN](../AMN)|2 |
54
-|[AOC2](../AOC2)|2 |
55
-|[C6orf103](../C6orf103)|2 |
56
-|[CDC42BPB](../CDC42BPB)|2 |
57
-|[CDKN2A](../CDKN2A)|2 |
58
-|[CLGN](../CLGN)|2 |
59
-|[CNKSR2](../CNKSR2)|2 |
60
-|[GPR98](../GPR98)|2 |
61
-|[LRP1B](../LRP1B)|2 |
62
-|[PACRG](../PACRG)|2 |
63
-|[PARK2](../PARK2)|2 |
64
-|[PLXNB3](../PLXNB3)|2 |
65
-|[RCOR1](../RCOR1)|2 |
66
-|[RPL1L](../RPL1L)|2 |
67
-|[SAMD5](../SAMD5)|2 |
68
-|[SCG3](../SCG3)|2 |
69
-|[STXBP5](../STXBP5)|2 |
70
-|[TAF1](../TAF1)|2 |
71
-|[TCTN2](../TCTN2)|2 |
72
-|[ZNF9](../ZNF9)|2 |
73
-
74
-
75
-# Details
76
-
papers/yildizActivatingSTAT6Mutations2015c.md
... ...
@@ -1,43 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @yildizActivatingSTAT6Mutations2015c
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-|FL|1|0|
13
-```mermaid
14
----
15
-config:
16
- sankey:
17
- showValues: true
18
- linkColor: target
19
- width: 600
20
- height: 300
21
- nodeAlignment: right
22
- prefix: '('
23
- suffix: ' genes)'
24
----
25
-sankey-beta
26
-This study, New Tier 1, 1
27
-New Tier 1, DLBCL Tier 1, 1
28
-This study, New Tier 2, 0
29
-New Tier 2, DLBCL Tier 2, 0
30
-All other DLBCL studies, DLBCL Tier 1, 127
31
-All other DLBCL studies, DLBCL Tier 2, 198
32
-```
33
-
34
-## Novel genes reported in this study
35
-
36
-### Tier 1
37
-|New gene|DLBCL tier|FL tier|
38
-|:-|:-:|:-:|
39
-|[STAT6](../STAT6)|1 |1 |
40
-
41
-
42
-# Details
43
-