BL_genes_with_bib.md
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## Tier 2 BL genes
39 39
40
-| Gene | Tier | Relevant references |
41
-|:----------------------:|:----:|:---------------------------------------------------------------------------------------------------------:|
42
-| [ACAD9](ACAD9) | 2 | (Love et al. 2012) |
43
-| [ACE](ACE) | 2 | (Love et al. 2012) |
44
-| [ADAMTS5](ADAMTS5) | 2 | (Burkhardt et al. 2022) |
45
-| [ADNP](ADNP) | 2 | (Burkhardt et al. 2022) |
46
-| [AGO4](AGO4) | 2 | (Burkhardt et al. 2022) |
47
-| [ALPK2](ALPK2) | 2 | (Panea et al. 2019) |
48
-| [ARHGEF1](ARHGEF1) | 2 | (Muppidi et al. 2014) |
49
-| [ATP2C2](ATP2C2) | 2 | (Love et al. 2012) |
50
-| [BACH2](BACH2) | 2 | (Grande et al. 2019) |
51
-| [BCL2](BCL2) | 2 | (Burkhardt et al. 2022; Morin et al. 2011; Tanaka et al. 1992) |
52
-| [BCL6](BCL6) | 2 | (Love et al. 2012; Morin et al. 2011) |
53
-| [BCL7A](BCL7A) | 2 | (Grande et al. 2019; Krysiak et al. 2017; Arthur et al. 2018) |
54
-| [BRAF](BRAF) | 2 | (Love et al. 2012; Tiacci et al. 2011) |
55
-| [BRD4](BRD4) | 2 | (Love et al. 2012) |
56
-| [BTG1](BTG1) | 2 | (Burkhardt et al. 2022; Morin et al. 2011) |
57
-| [BTG2](BTG2) | 2 | (Love et al. 2012; Morin et al. 2011, 2011) |
58
-| [C16orf48](C16orf48) | 2 | (Schmitz et al. 2012) |
59
-| [C6orf27](C6orf27) | 2 | (Love et al. 2012) |
60
-| [CAD](CAD) | 2 | (Love et al. 2012) |
61
-| [CARD11](CARD11) | 2 | (Panea et al. 2019; Morin et al. 2011; Lenz et al. 2008) |
62
-| [CARD4](CARD4) | 2 | (Love et al. 2012) |
63
-| [CCNF](CCNF) | 2 | (Abate et al. 2015) |
64
-| [CCT6B](CCT6B) | 2 | (Love et al. 2012) |
65
-| [CD79A](CD79A) | 2 | (Burkhardt et al. 2022) |
66
-| [CD79B](CD79B) | 2 | (Panea et al. 2019; Morin et al. 2011) |
67
-| [CD83](CD83) | 2 | (Panea et al. 2019; Russler-Germain et al. 2023; Morin et al. 2013) |
68
-| [CDC73](CDC73) | 2 | (Love et al. 2012; Reddy et al. 2017) |
69
-| [CDH17](CDH17) | 2 | (Love et al. 2012) |
70
-| [CDKN2A](CDKN2A) | 2 | (Grande et al. 2019; Morin et al. 2013) |
71
-| [CDKN2C](CDKN2C) | 2 | (Thomas et al. 2023) |
72
-| [CHD4](CHD4) | 2 | (Burkhardt et al. 2022) |
73
-| [COL4A2](COL4A2) | 2 | (Love et al. 2012) |
74
-| [CPXM2](CPXM2) | 2 | (Burkhardt et al. 2022) |
75
-| [CREBBP](CREBBP) | 2 | (Love et al. 2012; Laura Pasqualucci, Dominguez-Sola, et al. 2011, 2011) |
76
-| [CTCF](CTCF) | 2 | (Panea et al. 2019) |
77
-| [CXCR4](CXCR4) | 2 | (Panea et al. 2019; Krysiak et al. 2017; Khodabakhshi et al. 2012) |
78
-| [CYB5D1](CYB5D1) | 2 | (Love et al. 2012) |
79
-| [CYP4F22](CYP4F22) | 2 | (Love et al. 2012) |
80
-| [DHCR7](DHCR7) | 2 | (Schmitz et al. 2012) |
81
-| [DLGAP1](DLGAP1) | 2 | (Love et al. 2012) |
82
-| [DNMT1](DNMT1) | 2 | (Panea et al. 2019) |
83
-| [DTX1](DTX1) | 2 | (Panea et al. 2019; Schmitz et al. 2018) |
84
-| [E2F2](E2F2) | 2 | (Burkhardt et al. 2022) |
85
-| [EBF1](EBF1) | 2 | \[@; Bohle et al. (2013)\] |
86
-| [EDNRB](EDNRB) | 2 | (Burkhardt et al. 2022) |
87
-| [EHD1](EHD1) | 2 | \[@\] |
88
-| [EIF2C4](EIF2C4) | 2 | (Love et al. 2012) |
89
-| [ELP2](ELP2) | 2 | (Schmitz et al. 2012) |
90
-| [EML2](EML2) | 2 | (Love et al. 2012) |
91
-| [ENTPD3](ENTPD3) | 2 | (Love et al. 2012) |
92
-| [EP300](EP300) | 2 | \[@; Laura Pasqualucci, Dominguez-Sola, et al. (2011); Laura Pasqualucci, Dominguez-Sola, et al. (2011)\] |
93
-| [EPHB2](EPHB2) | 2 | (Love et al. 2012) |
94
-| [ERAP1](ERAP1) | 2 | (Burkhardt et al. 2022) |
95
-| [ETS1](ETS1) | 2 | (Panea et al. 2019; Morin et al. 2011) |
96
-| [EXOSC6](EXOSC6) | 2 | (Schmitz et al. 2012) |
97
-| [EZH2](EZH2) | 2 | (Love et al. 2012; Morin et al. 2010, 2010) |
98
-| [FAM129B](FAM129B) | 2 | (Love et al. 2012) |
99
-| [FGFR3](FGFR3) | 2 | (Love et al. 2012) |
100
-| [FLYWCH1](FLYWCH1) | 2 | (Schmitz et al. 2012) |
101
-| [FTCD](FTCD) | 2 | (Love et al. 2012) |
102
-| [FZD3](FZD3) | 2 | (Panea et al. 2019) |
103
-| [GGTLA4](GGTLA4) | 2 | (Love et al. 2012) |
104
-| [GRB2](GRB2) | 2 | (Panea et al. 2019; Laura Pasqualucci, Trifonov, et al. 2011) |
105
-| [GRIK5](GRIK5) | 2 | (Love et al. 2012) |
106
-| [GTSE1](GTSE1) | 2 | (Schmitz et al. 2012) |
107
-| [HIST1H1B](HIST1H1B) | 2 | (Krysiak et al. 2017; Chapuy et al. 2018) |
108
-| [HIST1H1C](HIST1H1C) | 2 | (Panea et al. 2019; Morin et al. 2011, 2011) |
109
-| [HIST1H1D](HIST1H1D) | 2 | (Krysiak et al. 2017; Morin et al. 2013) |
110
-| [HIST1H1E](HIST1H1E) | 2 | (Grande et al. 2019; Krysiak et al. 2017; Morin et al. 2013) |
111
-| [HIST1H2AG](HIST1H2AG) | 2 | (Panea et al. 2019; Krysiak et al. 2017; Morin et al. 2013) |
112
-| [HIST1H2AM](HIST1H2AM) | 2 | (Panea et al. 2019; Krysiak et al. 2017) |
113
-| [HIST1H2BK](HIST1H2BK) | 2 | (Panea et al. 2019) |
114
-| [HIST1H3D](HIST1H3D) | 2 | (Panea et al. 2019) |
115
-| [HIST1H3H](HIST1H3H) | 2 | (Panea et al. 2019) |
116
-| [HIST1H3I](HIST1H3I) | 2 | (Panea et al. 2019; Krysiak et al. 2017) |
117
-| [HIST1H3J](HIST1H3J) | 2 | (Panea et al. 2019) |
118
-| [HIST1H4J](HIST1H4J) | 2 | (Panea et al. 2019) |
119
-| [HLA-A](HLA-A) | 2 | \[@\] |
120
-| [HLA-B](HLA-B) | 2 | \[@\] |
121
-| [HLA-DMB](HLA-DMB) | 2 | \[@\] |
122
-| [HLA-DQB1](HLA-DQB1) | 2 | (Burkhardt et al. 2022) |
123
-| [ICK](ICK) | 2 | (Love et al. 2012) |
124
-| [IGLL5](IGLL5) | 2 | (Panea et al. 2019; Russler-Germain et al. 2023) |
125
-| [IKZF3](IKZF3) | 2 | (Panea et al. 2019; Morin et al. 2013) |
126
-| [IRF8](IRF8) | 2 | (Panea et al. 2019; Morin et al. 2011, 2011) |
127
-| [ITPR3](ITPR3) | 2 | (Love et al. 2012) |
128
-| [KANK2](KANK2) | 2 | (Schmitz et al. 2012) |
129
-| [KCNK10](KCNK10) | 2 | (Panea et al. 2019) |
130
-| [KIFC3](KIFC3) | 2 | (Love et al. 2012) |
131
-| [KLHL26](KLHL26) | 2 | (Burkhardt et al. 2022) |
132
-| [KLHL6](KLHL6) | 2 | \[@; Morin et al. (2011); Morin et al. (2011)\] |
133
-| [KMT2C](KMT2C) | 2 | (Zhou et al. 2019; Zhang et al. 2013) |
134
-| [LCOR](LCOR) | 2 | \[@; Arthur et al. (2018)\] |
135
-| [LTB](LTB) | 2 | \[@; Chapuy et al. (2018)\] |
136
-| [MAP3K6](MAP3K6) | 2 | (Love et al. 2012) |
137
-| [MCL1](MCL1) | 2 | (Panea et al. 2019; Reddy et al. 2017) |
138
-| [MEF2B](MEF2B) | 2 | \[@; Morin et al. (2011); Morin et al. (2011)\] |
139
-| [MIR142](MIR142) | 2 | (Grande et al. 2019; Kwanhian et al. 2012) |
140
-| [MKI67](MKI67) | 2 | (Schmitz et al. 2012; Russler-Germain et al. 2023) |
141
-| [MME](MME) | 2 | (Panea et al. 2019) |
142
-| [MTOR](MTOR) | 2 | (Panea et al. 2019; Zhang et al. 2013) |
143
-| [MYH10](MYH10) | 2 | (Love et al. 2012) |
144
-| [MYO18A](MYO18A) | 2 | (Schmitz et al. 2012) |
145
-| [NBEAL1](NBEAL1) | 2 | (Love et al. 2012) |
146
-| [NCOR2](NCOR2) | 2 | (Schmitz et al. 2012) |
147
-| [NOA1](NOA1) | 2 | (Burkhardt et al. 2022) |
148
-| [NOTCH1](NOTCH1) | 2 | (Love et al. 2012; Laura Pasqualucci, Trifonov, et al. 2011) |
149
-| [NOTCH2](NOTCH2) | 2 | (Panea et al. 2019; Trøen et al. 2008) |
150
-| [NRXN2](NRXN2) | 2 | (Love et al. 2012) |
151
-| [P2RY2](P2RY2) | 2 | (Love et al. 2012) |
152
-| [PABPC4L](PABPC4L) | 2 | (Panea et al. 2019) |
153
-| [PC](PC) | 2 | (Love et al. 2012) |
154
-| [PCBP1](PCBP1) | 2 | (Schmitz et al. 2012) |
155
-| [PCDHA11](PCDHA11) | 2 | (Panea et al. 2019) |
156
-| [PDCD11](PDCD11) | 2 | (Schmitz et al. 2012) |
157
-| [PDZRN3](PDZRN3) | 2 | (Panea et al. 2019) |
158
-| [PIK3R1](PIK3R1) | 2 | (Panea et al. 2019; Zhang et al. 2013) |
159
-| [PIM1](PIM1) | 2 | (Burkhardt et al. 2022; L. Pasqualucci et al. 2001) |
160
-| [PLCG2](PLCG2) | 2 | (Panea et al. 2019) |
161
-| [PMAIP1](PMAIP1) | 2 | \[@\] |
162
-| [POLRMT](POLRMT) | 2 | (Love et al. 2012) |
163
-| [POR](POR) | 2 | (Love et al. 2012) |
164
-| [PPP6R2](PPP6R2) | 2 | (Burkhardt et al. 2022) |
165
-| [PRDM1](PRDM1) | 2 | \[@; (**pasqualucciInactivationPRDM1BLIMP12006?**)\] |
166
-| [PREX1](PREX1) | 2 | (Burkhardt et al. 2022) |
167
-| [PRKCD](PRKCD) | 2 | \[@\] |
168
-| [PRSS22](PRSS22) | 2 | (Love et al. 2012) |
169
-| [PTPRN](PTPRN) | 2 | (Love et al. 2012) |
170
-| [PXDNL](PXDNL) | 2 | (Panea et al. 2019) |
171
-| [RAC2](RAC2) | 2 | (Panea et al. 2019; Hübschmann et al. 2021) |
172
-| [RANBP6](RANBP6) | 2 | (Love et al. 2012) |
173
-| [RBP3](RBP3) | 2 | (Love et al. 2012) |
174
-| [RET](RET) | 2 | (Love et al. 2012) |
175
-| [REV3L](REV3L) | 2 | (Burkhardt et al. 2022) |
176
-| [RNF144B](RNF144B) | 2 | (Panea et al. 2019) |
177
-| [RPL10](RPL10) | 2 | (Burkhardt et al. 2022) |
178
-| [RPL22](RPL22) | 2 | \[@\] |
179
-| [S1PR2](S1PR2) | 2 | (Muppidi et al. 2014; Morin et al. 2011) |
180
-| [SAL3](SAL3) | 2 | (Burkhardt et al. 2022) |
181
-| [SALL3](SALL3) | 2 | (Love et al. 2012) |
182
-| [SAPS2](SAPS2) | 2 | (Love et al. 2012) |
183
-| [SBF1](SBF1) | 2 | (Love et al. 2012) |
184
-| [SEPT10](SEPT10) | 2 | \[@\] |
185
-| [SF3B1](SF3B1) | 2 | (Love et al. 2012) |
186
-| [SHANK1](SHANK1) | 2 | (Love et al. 2012) |
187
-| [SLC29A2](SLC29A2) | 2 | (Love et al. 2012) |
188
-| [SNTB2](SNTB2) | 2 | (Panea et al. 2019) |
189
-| [SP3](SP3) | 2 | (Panea et al. 2019) |
190
-| [SYNCRIP](SYNCRIP) | 2 | (Panea et al. 2019) |
191
-| [SYNGAP1](SYNGAP1) | 2 | (Love et al. 2012) |
192
-| [TBC1D9B](TBC1D9B) | 2 | (Love et al. 2012) |
193
-| [TET2](TET2) | 2 | (Panea et al. 2019; Albuquerque et al. 2017) |
194
-| [TIGD6](TIGD6) | 2 | (Love et al. 2012) |
195
-| [TOP2A](TOP2A) | 2 | (Schmitz et al. 2012) |
196
-| [TPST2](TPST2) | 2 | (Love et al. 2012) |
197
-| [TTN](TTN) | 2 | (Burkhardt et al. 2022) |
198
-| [VWA7](VWA7) | 2 | (Burkhardt et al. 2022) |
199
-| [WDR7](WDR7) | 2 | (Panea et al. 2019) |
200
-| [WDR90](WDR90) | 2 | (Schmitz et al. 2012) |
201
-| [WHAMM](WHAMM) | 2 | (Schmitz et al. 2012) |
202
-| [WNK2](WNK2) | 2 | (Panea et al. 2019) |
203
-| [YY1AP1](YY1AP1) | 2 | (Schmitz et al. 2012) |
204
-| [ZAN](ZAN) | 2 | (Burkhardt et al. 2022) |
205
-| [ZBTB7A](ZBTB7A) | 2 | (Burkhardt et al. 2022; Reddy et al. 2017) |
206
-| [ZFP36L1](ZFP36L1) | 2 | (Panea et al. 2019; Morin et al. 2011) |
207
-| [ZNF229](ZNF229) | 2 | (Love et al. 2012) |
208
-| [ZNF85](ZNF85) | 2 | (Burkhardt et al. 2022) |
40
+| Gene | Tier | Relevant references |
41
+|:----------------------:|:----:|:-------------------------------------------------------------------------:|
42
+| [ACAD9](ACAD9) | 2 | (Love et al. 2012) |
43
+| [ACE](ACE) | 2 | (Love et al. 2012) |
44
+| [ADAMTS5](ADAMTS5) | 2 | (Burkhardt et al. 2022) |
45
+| [ADNP](ADNP) | 2 | (Burkhardt et al. 2022) |
46
+| [AGO4](AGO4) | 2 | (Burkhardt et al. 2022) |
47
+| [ALPK2](ALPK2) | 2 | (Panea et al. 2019) |
48
+| [ARHGEF1](ARHGEF1) | 2 | (Muppidi et al. 2014) |
49
+| [ATP2C2](ATP2C2) | 2 | (Love et al. 2012) |
50
+| [BACH2](BACH2) | 2 | (Grande et al. 2019) |
51
+| [BCL2](BCL2) | 2 | (Burkhardt et al. 2022; Morin et al. 2011; Tanaka et al. 1992) |
52
+| [BCL6](BCL6) | 2 | (Love et al. 2012; Morin et al. 2011) |
53
+| [BCL7A](BCL7A) | 2 | (Grande et al. 2019; Krysiak et al. 2017; Arthur et al. 2018) |
54
+| [BRAF](BRAF) | 2 | (Love et al. 2012; Tiacci et al. 2011) |
55
+| [BRD4](BRD4) | 2 | (Love et al. 2012) |
56
+| [BTG1](BTG1) | 2 | (Burkhardt et al. 2022; Morin et al. 2011) |
57
+| [BTG2](BTG2) | 2 | (Love et al. 2012; Morin et al. 2011, 2011) |
58
+| [C16orf48](C16orf48) | 2 | (Schmitz et al. 2012) |
59
+| [C6orf27](C6orf27) | 2 | (Love et al. 2012) |
60
+| [CAD](CAD) | 2 | (Love et al. 2012) |
61
+| [CARD11](CARD11) | 2 | (Panea et al. 2019; Morin et al. 2011; Lenz et al. 2008) |
62
+| [CARD4](CARD4) | 2 | (Love et al. 2012) |
63
+| [CCNF](CCNF) | 2 | (Abate et al. 2015) |
64
+| [CCT6B](CCT6B) | 2 | (Love et al. 2012) |
65
+| [CD79A](CD79A) | 2 | (Burkhardt et al. 2022) |
66
+| [CD79B](CD79B) | 2 | (Panea et al. 2019; Morin et al. 2011) |
67
+| [CD83](CD83) | 2 | (Panea et al. 2019; Russler-Germain et al. 2023; Morin et al. 2013) |
68
+| [CDC73](CDC73) | 2 | (Love et al. 2012; Reddy et al. 2017) |
69
+| [CDH17](CDH17) | 2 | (Love et al. 2012) |
70
+| [CDKN2A](CDKN2A) | 2 | (Grande et al. 2019; Morin et al. 2013) |
71
+| [CDKN2C](CDKN2C) | 2 | (Thomas et al. 2023) |
72
+| [CHD4](CHD4) | 2 | (Burkhardt et al. 2022) |
73
+| [COL4A2](COL4A2) | 2 | (Love et al. 2012) |
74
+| [CPXM2](CPXM2) | 2 | (Burkhardt et al. 2022) |
75
+| [CREBBP](CREBBP) | 2 | (Love et al. 2012; Laura Pasqualucci, Dominguez-Sola, et al. 2011, 2011) |
76
+| [CTCF](CTCF) | 2 | (Panea et al. 2019) |
77
+| [CXCR4](CXCR4) | 2 | (Panea et al. 2019; Krysiak et al. 2017; Khodabakhshi et al. 2012) |
78
+| [CYB5D1](CYB5D1) | 2 | (Love et al. 2012) |
79
+| [CYP4F22](CYP4F22) | 2 | (Love et al. 2012) |
80
+| [DHCR7](DHCR7) | 2 | (Schmitz et al. 2012) |
81
+| [DLGAP1](DLGAP1) | 2 | (Love et al. 2012) |
82
+| [DNMT1](DNMT1) | 2 | (Panea et al. 2019) |
83
+| [DTX1](DTX1) | 2 | (Panea et al. 2019; Schmitz et al. 2018) |
84
+| [E2F2](E2F2) | 2 | (Burkhardt et al. 2022) |
85
+| [EBF1](EBF1) | 2 | (Thomas et al. 2023; Bohle et al. 2013) |
86
+| [EDNRB](EDNRB) | 2 | (Burkhardt et al. 2022) |
87
+| [EHD1](EHD1) | 2 | (Thomas et al. 2023) |
88
+| [EIF2C4](EIF2C4) | 2 | (Love et al. 2012) |
89
+| [ELP2](ELP2) | 2 | (Schmitz et al. 2012) |
90
+| [EML2](EML2) | 2 | (Love et al. 2012) |
91
+| [ENTPD3](ENTPD3) | 2 | (Love et al. 2012) |
92
+| [EP300](EP300) | 2 | (Panea et al. 2019; Laura Pasqualucci, Dominguez-Sola, et al. 2011, 2011) |
93
+| [EPHB2](EPHB2) | 2 | (Love et al. 2012) |
94
+| [ERAP1](ERAP1) | 2 | (Burkhardt et al. 2022) |
95
+| [ETS1](ETS1) | 2 | (Panea et al. 2019; Morin et al. 2011) |
96
+| [EXOSC6](EXOSC6) | 2 | (Schmitz et al. 2012) |
97
+| [EZH2](EZH2) | 2 | (Love et al. 2012; Morin et al. 2010, 2010) |
98
+| [FAM129B](FAM129B) | 2 | (Love et al. 2012) |
99
+| [FGFR3](FGFR3) | 2 | (Love et al. 2012) |
100
+| [FLYWCH1](FLYWCH1) | 2 | (Schmitz et al. 2012) |
101
+| [FTCD](FTCD) | 2 | (Love et al. 2012) |
102
+| [FZD3](FZD3) | 2 | (Panea et al. 2019) |
103
+| [GGTLA4](GGTLA4) | 2 | (Love et al. 2012) |
104
+| [GRB2](GRB2) | 2 | (Panea et al. 2019; Laura Pasqualucci, Trifonov, et al. 2011) |
105
+| [GRIK5](GRIK5) | 2 | (Love et al. 2012) |
106
+| [GTSE1](GTSE1) | 2 | (Schmitz et al. 2012) |
107
+| [HIST1H1C](HIST1H1C) | 2 | (Panea et al. 2019; Morin et al. 2011, 2011) |
108
+| [HIST1H1E](HIST1H1E) | 2 | (Grande et al. 2019; Krysiak et al. 2017; Morin et al. 2013) |
109
+| [HIST1H2AG](HIST1H2AG) | 2 | (Panea et al. 2019; Krysiak et al. 2017; Morin et al. 2013) |
110
+| [HIST1H2AM](HIST1H2AM) | 2 | (Panea et al. 2019; Krysiak et al. 2017) |
111
+| [HIST1H2BK](HIST1H2BK) | 2 | (Panea et al. 2019) |
112
+| [HIST1H3D](HIST1H3D) | 2 | (Panea et al. 2019) |
113
+| [HIST1H3H](HIST1H3H) | 2 | (Panea et al. 2019) |
114
+| [HIST1H3I](HIST1H3I) | 2 | (Panea et al. 2019; Krysiak et al. 2017) |
115
+| [HIST1H3J](HIST1H3J) | 2 | (Panea et al. 2019) |
116
+| [HIST1H4J](HIST1H4J) | 2 | (Panea et al. 2019) |
117
+| [HLA-A](HLA-A) | 2 | \[@\] |
118
+| [HLA-B](HLA-B) | 2 | \[@\] |
119
+| [HLA-DMB](HLA-DMB) | 2 | \[@\] |
120
+| [HLA-DQB1](HLA-DQB1) | 2 | (Burkhardt et al. 2022) |
121
+| [ICK](ICK) | 2 | (Love et al. 2012) |
122
+| [IGLL5](IGLL5) | 2 | (Panea et al. 2019; Russler-Germain et al. 2023) |
123
+| [IKZF3](IKZF3) | 2 | (Panea et al. 2019; Morin et al. 2013) |
124
+| [IRF8](IRF8) | 2 | (Panea et al. 2019; Morin et al. 2011, 2011) |
125
+| [ITPR3](ITPR3) | 2 | (Love et al. 2012) |
126
+| [KANK2](KANK2) | 2 | (Schmitz et al. 2012) |
127
+| [KCNK10](KCNK10) | 2 | (Panea et al. 2019) |
128
+| [KIFC3](KIFC3) | 2 | (Love et al. 2012) |
129
+| [KLHL26](KLHL26) | 2 | (Burkhardt et al. 2022) |
130
+| [KLHL6](KLHL6) | 2 | (Panea et al. 2019; Morin et al. 2011, 2011) |
131
+| [KMT2C](KMT2C) | 2 | (Zhou et al. 2019; Zhang et al. 2013) |
132
+| [LTB](LTB) | 2 | (Panea et al. 2019; Chapuy et al. 2018) |
133
+| [MAP3K6](MAP3K6) | 2 | (Love et al. 2012) |
134
+| [MCL1](MCL1) | 2 | (Panea et al. 2019; Reddy et al. 2017) |
135
+| [MIR142](MIR142) | 2 | (Grande et al. 2019; Kwanhian et al. 2012) |
136
+| [MKI67](MKI67) | 2 | (Schmitz et al. 2012; Russler-Germain et al. 2023) |
137
+| [MME](MME) | 2 | (Panea et al. 2019) |
138
+| [MTOR](MTOR) | 2 | (Panea et al. 2019; Zhang et al. 2013) |
139
+| [MYH10](MYH10) | 2 | (Love et al. 2012) |
140
+| [MYO18A](MYO18A) | 2 | (Schmitz et al. 2012) |
141
+| [NBEAL1](NBEAL1) | 2 | (Love et al. 2012) |
142
+| [NCOR2](NCOR2) | 2 | (Schmitz et al. 2012) |
143
+| [NOA1](NOA1) | 2 | (Burkhardt et al. 2022) |
144
+| [NOTCH1](NOTCH1) | 2 | (Love et al. 2012; Laura Pasqualucci, Trifonov, et al. 2011) |
145
+| [NOTCH2](NOTCH2) | 2 | (Panea et al. 2019; Trøen et al. 2008) |
146
+| [NRXN2](NRXN2) | 2 | (Love et al. 2012) |
147
+| [P2RY2](P2RY2) | 2 | (Love et al. 2012) |
148
+| [PABPC4L](PABPC4L) | 2 | (Panea et al. 2019) |
149
+| [PC](PC) | 2 | (Love et al. 2012) |
150
+| [PCBP1](PCBP1) | 2 | (Schmitz et al. 2012) |
151
+| [PCDHA11](PCDHA11) | 2 | (Panea et al. 2019) |
152
+| [PDCD11](PDCD11) | 2 | (Schmitz et al. 2012) |
153
+| [PDZRN3](PDZRN3) | 2 | (Panea et al. 2019) |
154
+| [PIK3R1](PIK3R1) | 2 | (Panea et al. 2019; Zhang et al. 2013) |
155
+| [PIM1](PIM1) | 2 | (Burkhardt et al. 2022; L. Pasqualucci et al. 2001) |
156
+| [PLCG2](PLCG2) | 2 | (Panea et al. 2019) |
157
+| [POLRMT](POLRMT) | 2 | (Love et al. 2012) |
158
+| [POR](POR) | 2 | (Love et al. 2012) |
159
+| [PPP6R2](PPP6R2) | 2 | (Burkhardt et al. 2022) |
160
+| [PREX1](PREX1) | 2 | (Burkhardt et al. 2022) |
161
+| [PRSS22](PRSS22) | 2 | (Love et al. 2012) |
162
+| [PTPRN](PTPRN) | 2 | (Love et al. 2012) |
163
+| [PXDNL](PXDNL) | 2 | (Panea et al. 2019) |
164
+| [RAC2](RAC2) | 2 | (Panea et al. 2019; Hübschmann et al. 2021) |
165
+| [RANBP6](RANBP6) | 2 | (Love et al. 2012) |
166
+| [RBP3](RBP3) | 2 | (Love et al. 2012) |
167
+| [RET](RET) | 2 | (Love et al. 2012) |
168
+| [REV3L](REV3L) | 2 | (Burkhardt et al. 2022) |
169
+| [RNF144B](RNF144B) | 2 | (Panea et al. 2019) |
170
+| [RPL10](RPL10) | 2 | (Burkhardt et al. 2022) |
171
+| [S1PR2](S1PR2) | 2 | (Muppidi et al. 2014; Morin et al. 2011) |
172
+| [SAL3](SAL3) | 2 | (Burkhardt et al. 2022) |
173
+| [SALL3](SALL3) | 2 | (Love et al. 2012) |
174
+| [SAPS2](SAPS2) | 2 | (Love et al. 2012) |
175
+| [SBF1](SBF1) | 2 | (Love et al. 2012) |
176
+| [SF3B1](SF3B1) | 2 | (Love et al. 2012) |
177
+| [SHANK1](SHANK1) | 2 | (Love et al. 2012) |
178
+| [SLC29A2](SLC29A2) | 2 | (Love et al. 2012) |
179
+| [SNTB2](SNTB2) | 2 | (Panea et al. 2019) |
180
+| [SP3](SP3) | 2 | (Panea et al. 2019) |
181
+| [SYNCRIP](SYNCRIP) | 2 | (Panea et al. 2019) |
182
+| [SYNGAP1](SYNGAP1) | 2 | (Love et al. 2012) |
183
+| [TBC1D9B](TBC1D9B) | 2 | (Love et al. 2012) |
184
+| [TET2](TET2) | 2 | (Panea et al. 2019; Albuquerque et al. 2017) |
185
+| [TIGD6](TIGD6) | 2 | (Love et al. 2012) |
186
+| [TOP2A](TOP2A) | 2 | (Schmitz et al. 2012) |
187
+| [TPST2](TPST2) | 2 | (Love et al. 2012) |
188
+| [TTN](TTN) | 2 | (Burkhardt et al. 2022) |
189
+| [VWA7](VWA7) | 2 | (Burkhardt et al. 2022) |
190
+| [WDR7](WDR7) | 2 | (Panea et al. 2019) |
191
+| [WDR90](WDR90) | 2 | (Schmitz et al. 2012) |
192
+| [WHAMM](WHAMM) | 2 | (Schmitz et al. 2012) |
193
+| [WNK2](WNK2) | 2 | (Panea et al. 2019) |
194
+| [YY1AP1](YY1AP1) | 2 | (Schmitz et al. 2012) |
195
+| [ZAN](ZAN) | 2 | (Burkhardt et al. 2022) |
196
+| [ZBTB7A](ZBTB7A) | 2 | (Burkhardt et al. 2022; Reddy et al. 2017) |
197
+| [ZFP36L1](ZFP36L1) | 2 | (Panea et al. 2019; Morin et al. 2011) |
198
+| [ZNF229](ZNF229) | 2 | (Love et al. 2012) |
199
+| [ZNF85](ZNF85) | 2 | (Burkhardt et al. 2022) |
209 200
210 201
# References
211 202
DLBCL_genes_with_bib.md
... ...
@@ -41,9 +41,9 @@
41 41
| [DDX3X](DDX3X) | 1 | (Schmitz et al. 2018, 2012) |
42 42
| [DTX1](DTX1) | 1 | (Schmitz et al. 2018; Panea et al. 2019) |
43 43
| [DUSP2](DUSP2) | 1 | (Morin et al. 2013) |
44
-| [EBF1](EBF1) | 1 | \[Bohle et al. (2013); @\] |
44
+| [EBF1](EBF1) | 1 | (Bohle et al. 2013; Thomas et al. 2023) |
45 45
| [EEF1A1](EEF1A1) | 1 | (Hübschmann et al. 2021) |
46
-| [EP300](EP300) | 1 | \[Laura Pasqualucci, Dominguez-Sola, et al. (2011); @\] |
46
+| [EP300](EP300) | 1 | (Laura Pasqualucci, Dominguez-Sola, et al. 2011; Panea et al. 2019) |
47 47
| [ETS1](ETS1) | 1 | (Morin et al. 2011; Panea et al. 2019) |
48 48
| [ETV6](ETV6) | 1 | (Arthur et al. 2018) |
49 49
| [EZH2](EZH2) | 1 | (Morin et al. 2010; Love et al. 2012) |
... ...
@@ -85,15 +85,15 @@
85 85
| [JUNB](JUNB) | 1 | (Reddy et al. 2017) |
86 86
| [KLF2](KLF2) | 1 | (Laura Pasqualucci, Trifonov, et al. 2011) |
87 87
| [KLHL14](KLHL14) | 1 | (Zhang et al. 2013) |
88
-| [KLHL6](KLHL6) | 1 | \[Morin et al. (2011); @\] |
88
+| [KLHL6](KLHL6) | 1 | (Morin et al. 2011; Panea et al. 2019) |
89 89
| [KMT2C](KMT2C) | 1 | (Zhang et al. 2013; Zhou et al. 2019) |
90 90
| [KMT2D](KMT2D) | 1 | (Morin et al. 2011; Grande et al. 2019) |
91 91
| [KRAS](KRAS) | 1 | (Lohr et al. 2012) |
92
-| [LCOR](LCOR) | 1 | \[Arthur et al. (2018); @\] |
93
-| [LTB](LTB) | 1 | \[Chapuy et al. (2018); @\] |
92
+| [LCOR](LCOR) | 1 | (Arthur et al. 2018) |
93
+| [LTB](LTB) | 1 | (Chapuy et al. 2018; Panea et al. 2019) |
94 94
| [LYN](LYN) | 1 | (Chapuy et al. 2018) |
95 95
| [MCL1](MCL1) | 1 | (Reddy et al. 2017; Panea et al. 2019) |
96
-| [MEF2B](MEF2B) | 1 | \[Morin et al. (2011); @\] |
96
+| [MEF2B](MEF2B) | 1 | (Morin et al. 2011) |
97 97
| [MEF2C](MEF2C) | 1 | (Arthur et al. 2018) |
98 98
| [MGA](MGA) | 1 | (Zhang et al. 2013) |
99 99
| [MPEG1](MPEG1) | 1 | (Morin et al. 2013) |
... ...
@@ -118,7 +118,7 @@
118 118
| [PIM2](PIM2) | 1 | (Arthur et al. 2018) |
119 119
| [POU2AF1](POU2AF1) | 1 | (Krysiak et al. 2017) |
120 120
| [POU2F2](POU2F2) | 1 | (Zhang et al. 2013; Krysiak et al. 2017) |
121
-| [PRDM1](PRDM1) | 1 | \[(**pasqualucciInactivationPRDM1BLIMP12006?**); @\] |
121
+| [PRDM1](PRDM1) | 1 | (Laura Pasqualucci et al. 2006) |
122 122
| [PRKDC](PRKDC) | 1 | (Schmitz et al. 2018; Hübschmann et al. 2021) |
123 123
| [PTEN](PTEN) | 1 | (Love et al. 2012) |
124 124
| [PTPRD](PTPRD) | 1 | |
... ...
@@ -659,6 +659,16 @@ Splenic Marginal Zone Lymphoma.” *PloS One* 8 (12): e83244.
659 659
660 660
</div>
661 661
662
+<div id="ref-pasqualucciInactivationPRDM1BLIMP12006a" class="csl-entry">
663
+
664
+Pasqualucci, Laura, Mara Compagno, Jane Houldsworth, Stefano Monti,
665
+Adina Grunn, Subhadra V Nandula, Jon C Aster, Vundavally V Murty,
666
+Margaret A Shipp, and Riccardo Dalla-Favera. 2006. “Inactivation of the
667
+PRDM1/BLIMP1 Gene in Diffuse Large B Cell Lymphoma.” *J Exp Med* 203
668
+(2): 311–17.
669
+
670
+</div>
671
+
662 672
<div id="ref-pasqualucciInactivatingMutationsAcetyltransferase2011a"
663 673
class="csl-entry">
664 674
FL_genes_with_bib.md
... ...
@@ -24,9 +24,9 @@
24 24
| [CREBBP](CREBBP) | 1 | (Laura Pasqualucci, Dominguez-Sola, et al. 2011; Love et al. 2012) |
25 25
| [CTSS](CTSS) | 1 | (Bararia et al. 2020) |
26 26
| [DTX1](DTX1) | 1 | (Schmitz et al. 2018; Panea et al. 2019) |
27
-| [EBF1](EBF1) | 1 | \[Bohle et al. (2013); @\] |
27
+| [EBF1](EBF1) | 1 | (Bohle et al. 2013; Thomas et al. 2023) |
28 28
| [EEF1A1](EEF1A1) | 1 | (Hübschmann et al. 2021) |
29
-| [EP300](EP300) | 1 | \[Laura Pasqualucci, Dominguez-Sola, et al. (2011); @\] |
29
+| [EP300](EP300) | 1 | (Laura Pasqualucci, Dominguez-Sola, et al. 2011; Panea et al. 2019) |
30 30
| [EZH2](EZH2) | 1 | (Morin et al. 2010; Love et al. 2012) |
31 31
| [FAS](FAS) | 1 | (Scholl et al. 2007) |
32 32
| [FOXO1](FOXO1) | 1 | (Morin et al. 2011; Schmitz et al. 2012) |
... ...
@@ -49,11 +49,11 @@
49 49
| [IRF8](IRF8) | 1 | (Morin et al. 2011; Panea et al. 2019) |
50 50
| [ITPKB](ITPKB) | 1 | (Schmitz et al. 2018) |
51 51
| [KLF2](KLF2) | 1 | (Laura Pasqualucci, Trifonov, et al. 2011) |
52
-| [KLHL6](KLHL6) | 1 | \[Morin et al. (2011); @\] |
52
+| [KLHL6](KLHL6) | 1 | (Morin et al. 2011; Panea et al. 2019) |
53 53
| [KMT2D](KMT2D) | 1 | (Morin et al. 2011; Grande et al. 2019) |
54
-| [LTB](LTB) | 1 | \[Chapuy et al. (2018); @\] |
54
+| [LTB](LTB) | 1 | (Chapuy et al. 2018; Panea et al. 2019) |
55 55
| [MAP2K1](MAP2K1) | 1 | (Louissaint et al. 2016; Shin et al. 2015) |
56
-| [MEF2B](MEF2B) | 1 | \[Morin et al. (2011); @\] |
56
+| [MEF2B](MEF2B) | 1 | (Morin et al. 2011) |
57 57
| [MEF2C](MEF2C) | 1 | (Arthur et al. 2018) |
58 58
| [PCLO](PCLO) | 1 | (Lohr et al. 2012) |
59 59
| [PIM1](PIM1) | 1 | (L. Pasqualucci et al. 2001; Burkhardt et al. 2022) |
... ...
@@ -520,6 +520,16 @@ Non-Hodgkin’s Lymphomas.” *Blood* 79 (1): 229–37.
520 520
521 521
</div>
522 522
523
+<div id="ref-thomasGeneticSubgroupsInform2023" class="csl-entry">
524
+
525
+Thomas, Nicole, Kostiantyn Dreval, Daniela S. Gerhard, Laura K. Hilton,
526
+Jeremy S. Abramson, Richard F. Ambinder, Stefan Barta, et al. 2023.
527
+“Genetic Subgroups Inform on Pathobiology in Adult and Pediatric Burkitt
528
+Lymphoma.” *Blood* 141 (8): 904–16.
529
+<https://doi.org/10.1182/blood.2022016534>.
530
+
531
+</div>
532
+
523 533
<div id="ref-wildaInactivationARFMDM2p53Pathway2004" class="csl-entry">
524 534
525 535
Wilda, M., J. Bruch, L. Harder, D. Rawer, A. Reiter, A. Borkhardt, and