e6c8bb659f1e85a3bcfde0fcdcadd3d65a47c99e
BACH2.md
| ... | ... | @@ -29,6 +29,8 @@ timeline |
| 29 | 29 | |BL |Thomas cohort |0.40 | |
| 30 | 30 | |BL |Panea cohort |5.00 | |
| 31 | 31 | |
| 32 | +[[include:DLBCL_BACH2.md]] |
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| 33 | + |
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| 32 | 34 | ## Mutation pattern and selective pressure estimates |
| 33 | 35 | |
| 34 | 36 | |Entity|aSHM|Significant selection|dN/dS (missense)|dN/dS (nonsense)| |
DLBCL_BACH2.md
| ... | ... | @@ -0,0 +1,54 @@ |
| 1 | +<table class="table" style="margin-left: auto; margin-right: auto;"> |
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| 2 | + <thead> |
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| 3 | + <tr> |
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| 4 | + <th style="text-align:left;"> pathology </th> |
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| 5 | + <th style="text-align:left;"> Samples </th> |
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| 6 | + <th style="text-align:right;"> Incidence </th> |
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| 7 | + <th style="text-align:left;"> CI </th> |
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| 8 | + </tr> |
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| 9 | + </thead> |
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| 10 | +<tbody> |
|
| 11 | + <tr> |
|
| 12 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
|
| 13 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL without Reddy </td> |
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| 14 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 241, 234, 255) !important;">0.0090</span> </td> |
|
| 15 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0034,0.0146] </td> |
|
| 16 | + </tr> |
|
| 17 | + <tr> |
|
| 18 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
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| 19 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL with Reddy </td> |
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| 20 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 241, 234, 255) !important;">0.0096</span> </td> |
|
| 21 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0049,0.0144] </td> |
|
| 22 | + </tr> |
|
| 23 | + <tr> |
|
| 24 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 243, 237, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
|
| 25 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 243, 237, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BC </td> |
|
| 26 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 243, 237, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 243, 237, 255) !important;">0.0045</span> </td> |
|
| 27 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 243, 237, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0.0133] </td> |
|
| 28 | + </tr> |
|
| 29 | + <tr> |
|
| 30 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
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| 31 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Dana-Farber </td> |
|
| 32 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 241, 234, 255) !important;">0.0099</span> </td> |
|
| 33 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 241, 234, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0.021] </td> |
|
| 34 | + </tr> |
|
| 35 | + <tr> |
|
| 36 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 239, 232, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
|
| 37 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 239, 232, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> NCI </td> |
|
| 38 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 239, 232, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 239, 232, 255) !important;">0.0128</span> </td> |
|
| 39 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 239, 232, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0026,0.0229] </td> |
|
| 40 | + </tr> |
|
| 41 | + <tr> |
|
| 42 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 240, 233, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
|
| 43 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 240, 233, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Reddy </td> |
|
| 44 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 240, 233, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 240, 233, 255) !important;">0.0112</span> </td> |
|
| 45 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 240, 233, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0023,0.0202] </td> |
|
| 46 | + </tr> |
|
| 47 | + <tr> |
|
| 48 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 235, 226, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td> |
|
| 49 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 235, 226, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL_ICGC </td> |
|
| 50 | + <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 235, 226, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 235, 226, 255) !important;">0.0235</span> </td> |
|
| 51 | + <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 235, 226, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0,0.0558] </td> |
|
| 52 | + </tr> |
|
| 53 | +</tbody> |
|
| 54 | +</table> |
|
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