eedf3e9dc5dd04d36b7b4b3ec1c955bf741221dc
HIST1H2AM.md
| ... | ... | @@ -27,7 +27,7 @@ timeline |
| 27 | 27 | |:------:|:----:|--------------------------------------| |
| 28 | 28 | | |1 |high-confidence DLBCL gene | |
| 29 | 29 | | |1 |high-confidence FL gene [@krysiakRecurrentSomaticMutations2017b]| |
| 30 | -| |2-F |Failed QC| |
|
| 30 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 31 | 31 | |
| 32 | 32 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 33 | 33 |
HIST1H2BK.md
| ... | ... | @@ -9,6 +9,8 @@ link-citations: true |
| 9 | 9 | |
| 10 | 10 | This gene encodes the H2A protein, one of the core proteins comprising nucleosomes. Although relatively common in DLBCL, little is known about the function of these mutations. |
| 11 | 11 | |
| 12 | +<<Warn("The variants reported in this gene in BL failed QC")>> |
|
| 13 | + |
|
| 12 | 14 | ## History |
| 13 | 15 | ```mermaid |
| 14 | 16 | %%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%% |
| ... | ... | @@ -23,7 +25,7 @@ timeline |
| 23 | 25 | |Entity|Tier|Description | |
| 24 | 26 | |:------:|:----:|--------------------------------------| |
| 25 | 27 | ||2|relevance in MZL not firmly established[@rossiCodingGenomeSplenic2012c]| |
| 26 | -| |2-F |Failed QC| |
|
| 28 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 27 | 29 | | |1 |high-confidence DLBCL gene | |
| 28 | 30 | |
| 29 | 31 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| ... | ... | @@ -63,7 +65,7 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H |
| 63 | 65 | |
| 64 | 66 | ## Representative Mutations |
| 65 | 67 | |
| 66 | -### BL<sup>2</sup> |
|
| 68 | +### BL[@paneaWholeGenomeLandscape2019] |
|
| 67 | 69 | |
| 68 | 70 |  |
| 69 | 71 | **Rating** |
HIST1H3H.md
| ... | ... | @@ -21,7 +21,7 @@ timeline |
| 21 | 21 | |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | -| |2-F |Failed QC| |
|
| 24 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 25 | 25 | |
| 26 | 26 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 27 | 27 |
HIST1H3J.md
| ... | ... | @@ -22,7 +22,7 @@ timeline |
| 22 | 22 | |
| 23 | 23 | |Entity|Tier|Description | |
| 24 | 24 | |:------:|:----:|--------------------------------------| |
| 25 | -| |2-F |Failed QC| |
|
| 25 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 26 | 26 | |
| 27 | 27 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 28 | 28 |
KCNK10.md
| ... | ... | @@ -21,7 +21,7 @@ timeline |
| 21 | 21 | |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | -| |2-F |Failed QC| |
|
| 24 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 25 | 25 | |
| 26 | 26 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 27 | 27 |
MTOR.md
| ... | ... | @@ -9,6 +9,9 @@ link-citations: true |
| 9 | 9 | |
| 10 | 10 | Although mutations in MTOR have been reported in DLBCL and some BL, their role in lymphomagenesis has not been thoroughly studied. |
| 11 | 11 | |
| 12 | +<<Warn("The variants reported in this gene in BL failed QC")>> |
|
| 13 | + |
|
| 14 | + |
|
| 12 | 15 | ## History |
| 13 | 16 | ```mermaid |
| 14 | 17 | %%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%% |
PXDNL.md
| ... | ... | @@ -21,7 +21,7 @@ timeline |
| 21 | 21 | |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | -| |2-F |Failed QC| |
|
| 24 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 25 | 25 | |
| 26 | 26 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 27 | 27 |
SNTB2.md
| ... | ... | @@ -21,7 +21,7 @@ timeline |
| 21 | 21 | |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | -| |2-F |Failed QC| |
|
| 24 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 25 | 25 | |
| 26 | 26 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 27 | 27 |
WDR7.md
| ... | ... | @@ -21,7 +21,7 @@ timeline |
| 21 | 21 | |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | -| |2-F |Failed QC| |
|
| 24 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 25 | 25 | |
| 26 | 26 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 27 | 27 |