Changes in f1b56d6: update

				FL_genes.md
			
          @@ -11,7 +11,7 @@ link-citations: true

           ## Tier 1, high-confidence FL genes

          -### *57 total*

          +### *54 total*

           |Gene|Summary| First FL study | Other entities | QC result |

           |:-:|:--:|:-:|:-|:-|

          @@ -46,10 +46,7 @@ link-citations: true

           |[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]||

           |[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]||

           |[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]||

          -|[HIST1H2BD](HIST1H2BD)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

           |[HIST1H2BG](HIST1H2BG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

          -|[HIST1H3G](HIST1H3G)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

          -|[HIST1H3I](HIST1H3I)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@paneaWholeGenomeLandscape2019]||

           |[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]||

           |[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]||

           |[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]||

          @@ -75,7 +72,7 @@ link-citations: true

           ## Tier 2, low-confidence FL genes

          -### *56 total*

          +### *59 total*

           |Gene|Summary| First FL study | Other entities | QC result |

           |:-:|:--:|:-:|:-|:-|

          @@ -100,8 +97,11 @@ link-citations: true

           |[FZR1](FZR1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|||

           |[GBP7](GBP7)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|||

           |[GRM6](GRM6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|||

          +|[HIST1H2BD](HIST1H2BD)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

           |[HIST1H2BM](HIST1H2BM)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

           |[HIST1H3B](HIST1H3B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]||

          +|[HIST1H3G](HIST1H3G)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|||

          +|[HIST1H3I](HIST1H3I)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@paneaWholeGenomeLandscape2019]||

           |[HLA-B](HLA-B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]||

           |[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]||

           |[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]||

...	...	@@ -11,7 +11,7 @@ link-citations: true
11	11
12	12	## Tier 1, high-confidence FL genes
13	13
14		-### 57 total
	14	+### 54 total
15	15
16	16	\|Gene\|Summary\| First FL study \| Other entities \| QC result \|
17	17	\|:-:\|:--:\|:-:\|:-\|:-\|
...	...	@@ -46,10 +46,7 @@ link-citations: true
46	46	\|[HIST1H2AG](HIST1H2AG)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]\|\|
47	47	\|[HIST1H2AM](HIST1H2AM)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]\|\|
48	48	\|[HIST1H2BC](HIST1H2BC)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]\|\|
49		-\|[HIST1H2BD](HIST1H2BD)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
50	49	\|[HIST1H2BG](HIST1H2BG)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
51		-\|[HIST1H3G](HIST1H3G)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
52		-\|[HIST1H3I](HIST1H3I)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@paneaWholeGenomeLandscape2019]\|\|
53	50	\|[HVCN1](HVCN1)\|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@chapuyMolecularSubtypesDiffuse2018b]\|\|
54	51	\|[IRF4](IRF4)\|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM\|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)\|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]\|\|
55	52	\|[IRF8](IRF8)\|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)\|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]\|\|
...	...	@@ -75,7 +72,7 @@ link-citations: true
75	72
76	73	## Tier 2, low-confidence FL genes
77	74
78		-### 56 total
	75	+### 59 total
79	76
80	77	\|Gene\|Summary\| First FL study \| Other entities \| QC result \|
81	78	\|:-:\|:--:\|:-:\|:-\|:-\|
...	...	@@ -100,8 +97,11 @@ link-citations: true
100	97	\|[FZR1](FZR1)\|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)\|\|\|
101	98	\|[GBP7](GBP7)\|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]\|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)\|\|\|
102	99	\|[GRM6](GRM6)\|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]\|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)\|\|\|
	100	+\|[HIST1H2BD](HIST1H2BD)\|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
103	101	\|[HIST1H2BM](HIST1H2BM)\|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
104	102	\|[HIST1H3B](HIST1H3B)\|Tier 2 GE, aSHM\|\|[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]\|\|
	103	+\|[HIST1H3G](HIST1H3G)\|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|\|\|
	104	+\|[HIST1H3I](HIST1H3I)\|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]\|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)\|[@paneaWholeGenomeLandscape2019]\|\|
105	105	\|[HLA-B](HLA-B)\|Tier 2 GE, aSHM\|\|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]\|\|
106	106	\|[IGLL5](IGLL5)\|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM\|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023b)\|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]\|\|
107	107	\|[ITPKB](ITPKB)\|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM\|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)\|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]\|\|