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papers/fanComprehensiveCharacterizationDriver2020b.md
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| 1 | +--- |
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| 2 | +title: '' |
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| 3 | +bibliography: 'morinlab.bib' |
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| 4 | +--- |
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| 5 | + |
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| 6 | +# @fanComprehensiveCharacterizationDriver2020b |
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| 7 | +## Summary of novel genes |
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| 8 | + |
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| 9 | +|Entity| Tier 1 genes| Tier 2 genes| |
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| 10 | +|:-:|:-:|:-:| |
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| 11 | +|DLBCL|0|0| |
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| 12 | +```mermaid |
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| 13 | +--- |
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| 14 | +config: |
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| 15 | + sankey: |
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| 16 | + showValues: true |
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| 17 | + linkColor: target |
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| 18 | + width: 600 |
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| 19 | + height: 300 |
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| 20 | + nodeAlignment: right |
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| 21 | + prefix: '(' |
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| 22 | + suffix: ' genes)' |
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| 23 | +--- |
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| 24 | +sankey-beta |
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| 25 | +This study, New Tier 1, |
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| 26 | +New Tier 1, Tier 1, |
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| 27 | +This study, New Tier 2, |
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| 28 | +New Tier 2, Tier 2, |
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| 29 | +All other studies, Tier 1, 0 |
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| 30 | +All other studies, Tier 2, 0 |
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| 31 | +``` |
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| 32 | + |
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| 33 | +### Tier 2 |
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| 34 | +|New gene|DLBCL tier| |
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| 35 | +|:-|:-:| |
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| 36 | +|[ABCB1](../ABCB1)|3 | |
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| 37 | +|[AGA](../AGA)|3 | |
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| 38 | +|[APMAP](../APMAP)|3 | |
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| 39 | +|[ATP6V0A1](../ATP6V0A1)|3 | |
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| 40 | +|[BRCA1](../BRCA1)|3 | |
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| 41 | +|[CBX3](../CBX3)|3 | |
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| 42 | +|[CDKN1A](../CDKN1A)|3 | |
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| 43 | +|[CGN](../CGN)|3 | |
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| 44 | +|[CHEK2](../CHEK2)|3 | |
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| 45 | +|[CSNK1A1](../CSNK1A1)|3 | |
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| 46 | +|[CSNK2A1](../CSNK2A1)|3 | |
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| 47 | +|[CYYR1](../CYYR1)|3 | |
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| 48 | +|[DGCR8](../DGCR8)|3 | |
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| 49 | +|[DHX33](../DHX33)|3 | |
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| 50 | +|[DOCK5](../DOCK5)|3 | |
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| 51 | +|[ECT2L](../ECT2L)|3 | |
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| 52 | +|[EGFR](../EGFR)|3 | |
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| 53 | +|[FAIM](../FAIM)|3 | |
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| 54 | +|[FAM161A](../FAM161A)|3 | |
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| 55 | +|[FLNA](../FLNA)|3 | |
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| 56 | +|[FLT1](../FLT1)|3 | |
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| 57 | +|[FN1](../FN1)|3 | |
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| 58 | +|[FZD1](../FZD1)|3 | |
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| 59 | +|[GATA2](../GATA2)|3 | |
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| 60 | +|[GATA3](../GATA3)|3 | |
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| 61 | +|[HFE](../HFE)|3 | |
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| 62 | +|[HLA-DRB1](../HLA-DRB1)|3 | |
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| 63 | +|[IL6ST](../IL6ST)|3 | |
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| 64 | +|[ITGB4](../ITGB4)|3 | |
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| 65 | +|[ITPR1](../ITPR1)|3 | |
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| 66 | +|[KITLG](../KITLG)|3 | |
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| 67 | +|[KLRC4](../KLRC4)|3 | |
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| 68 | +|[LEPR](../LEPR)|3 | |
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| 69 | +|[MAP2K3](../MAP2K3)|3 | |
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| 70 | +|[MCM8](../MCM8)|3 | |
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| 71 | +|[MLH1](../MLH1)|3 | |
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| 72 | +|[MMEL1](../MMEL1)|3 | |
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| 73 | +|[MSN](../MSN)|3 | |
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| 74 | +|[NOTCH3](../NOTCH3)|3 | |
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| 75 | +|[NUP153](../NUP153)|3 | |
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| 76 | +|[PABPC1](../PABPC1)|3 | |
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| 77 | +|[PDGFRB](../PDGFRB)|3 | |
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| 78 | +|[PFN1](../PFN1)|3 | |
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| 79 | +|[PGR](../PGR)|3 | |
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| 80 | +|[PLCB4](../PLCB4)|3 | |
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| 81 | +|[PLCG2](../PLCG2)|3 | |
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| 82 | +|[POLD3](../POLD3)|3 | |
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| 83 | +|[POLQ](../POLQ)|3 | |
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| 84 | +|[PPP2R2B](../PPP2R2B)|3 | |
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| 85 | +|[PTCH1](../PTCH1)|3 | |
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| 86 | +|[RAF1](../RAF1)|3 | |
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| 87 | +|[RAPGEF3](../RAPGEF3)|3 | |
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| 88 | +|[RECQL4](../RECQL4)|3 | |
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| 89 | +|[RET](../RET)|3 | |
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| 90 | +|[RHPN2](../RHPN2)|3 | |
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| 91 | +|[RIF1](../RIF1)|3 | |
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| 92 | +|[RIMS4](../RIMS4)|3 | |
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| 93 | +|[RPTOR](../RPTOR)|3 | |
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| 94 | +|[SLC16A8](../SLC16A8)|3 | |
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| 95 | +|[SMO](../SMO)|3 | |
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| 96 | +|[SOS2](../SOS2)|3 | |
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| 97 | +|[TECRL](../TECRL)|3 | |
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| 98 | +|[TLN1](../TLN1)|3 | |
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| 99 | +|[TLR4](../TLR4)|3 | |
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| 100 | +|[TNPO1](../TNPO1)|3 | |
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| 101 | +|[TPR](../TPR)|3 | |
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| 102 | +|[TYRO3](../TYRO3)|3 | |
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| 103 | +|[UBXN11](../UBXN11)|3 | |
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| 104 | +|[UBXN2B](../UBXN2B)|3 | |
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| 105 | +|[VANGL1](../VANGL1)|3 | |
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| 106 | +|[ZMYM4](../ZMYM4)|3 | |
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| 107 | +|[ZNF814](../ZNF814)|3 | |
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| 108 | + |
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| 109 | + |
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| 110 | +# Details |
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| 111 | + |