f624efd63710caf162aa4b54543e32da6afd58e5
DLBCL_genes.md
| ... | ... | @@ -19,40 +19,40 @@ link-citations: true |
| 19 | 19 | |[ACTG1](ACTG1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|| |
| 20 | 20 | |[ARID1A](ARID1A)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]|| |
| 21 | 21 | |[ATM](ATM)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]|| |
| 22 | -|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
|
| 23 | -|[BCL10](BCL10)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]|| |
|
| 24 | -|[BCL2](BCL2)|Tier 1 GE[@tanakaFrequentIncidenceSomatic1992], FE|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 25 | -|[BCL6](BCL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012]|| |
|
| 26 | -|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|| |
|
| 22 | +|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
|
| 23 | +|[BCL10](BCL10)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@xiaBCL10MutationsDefine2022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]|| |
|
| 24 | +|[BCL2](BCL2)|Tier 1 GE[@tanakaFrequentIncidenceSomatic1992], FE[@balSuperenhancerHypermutationAlters2022]|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 25 | +|[BCL6](BCL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balSuperenhancerHypermutationAlters2022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012]|| |
|
| 26 | +|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|| |
|
| 27 | 27 | |[BIRC6](BIRC6)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@sarkozyMutationalLandscapeGray2021a]|| |
| 28 | 28 | |[BRAF](BRAF)|Tier 1 GE[@tiacciBRAFMutationsHairycell2011a]|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011a)|[@loveGeneticLandscapeMutations2012]|| |
| 29 | -|[BTG1](BTG1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 29 | +|[BTG1](BTG1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@mlynarczykBTG1MutationYields2023b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 30 | 30 | |[BTG2](BTG2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012]|| |
| 31 | 31 | |[BTK](BTK)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)|[@krysiakRecurrentSomaticMutations2017b]|| |
| 32 | -|[CARD11](CARD11)|Tier 1 GE[@lenzOncogenicCARD11Mutations2008], FE, CE|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
|
| 33 | -|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|| |
|
| 34 | -|[CD58](CD58)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schneiderAlterationsCD58Gene2015a]|| |
|
| 32 | +|[CARD11](CARD11)|Tier 1 GE[@lenzOncogenicCARD11Mutations2008], FE[@lenzOncogenicCARD11Mutations2008], CE|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
|
| 33 | +|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|| |
|
| 34 | +|[CD58](CD58)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schneiderAlterationsCD58Gene2015a]|| |
|
| 35 | 35 | |[CD70](CD70)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023b]|| |
| 36 | -|[CD79B](CD79B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
|
| 36 | +|[CD79B](CD79B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@davisChronicActiveBcellreceptor2010]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
|
| 37 | 37 | |[CD83](CD83)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|| |
| 38 | 38 | |[CDKN2A](CDKN2A)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], CE|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]|| |
| 39 | -|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 39 | +|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 40 | 40 | |[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012]|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|| |
| 41 | 41 | |[CXCR5](CXCR5)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 42 | -|[DDX3X](DDX3X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE, CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 43 | -|[DTX1](DTX1)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE, CE|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]|| |
|
| 42 | +|[DDX3X](DDX3X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@gongSequentialInverseDysregulation2021], CE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 43 | +|[DTX1](DTX1)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@demirandaExomeSequencingReveals2014], CE|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]|| |
|
| 44 | 44 | |[DUSP2](DUSP2)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
| 45 | 45 | |[EBF1](EBF1)|Tier 1 GE[@bohleRoleEarlyBcell2013]|[Bohle et al](papers/bohleRoleEarlyBcell2013)|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|| |
| 46 | 46 | |[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b], CE|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@reichelFlowSortingExome2015a]|| |
| 47 | -|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 47 | +|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 48 | 48 | |[ETS1](ETS1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 49 | 49 | |[ETV6](ETV6)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)||| |
| 50 | -|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010a], FE|[Morin et al](papers/morinSomaticMutationsAltering2010a)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 50 | +|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010a], FE[@yapSomaticMutationsEZH22011b]|[Morin et al](papers/morinSomaticMutationsAltering2010a)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 51 | 51 | |[FAS](FAS)|Tier 1 GE[@schollMutationsRegionFAS2007]|[Scholl et al](papers/schollMutationsRegionFAS2007)|[@spinaGeneticsNodalMarginal2016b]|| |
| 52 | 52 | |[FBXO11](FBXO11)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]|| |
| 53 | 53 | |[FBXW7](FBXW7)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 54 | -|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 55 | -|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
|
| 54 | +|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations], CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 55 | +|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
|
| 56 | 56 | |[GNAI2](GNAI2)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019]|| |
| 57 | 57 | |[GRB2](GRB2)|Tier 1 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 58 | 58 | |[GRHPR](GRHPR)|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| ... | ... | @@ -73,7 +73,7 @@ link-citations: true |
| 73 | 73 | |[HNRNPU](HNRNPU)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@paneaWholeGenomeLandscape2019]|| |
| 74 | 74 | |[HVCN1](HVCN1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@krysiakRecurrentSomaticMutations2017b]|| |
| 75 | 75 | |[IKZF3](IKZF3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 76 | -|[IL4R](IL4R)|Tier 1 GE[@dunsCharacterizationDLBCLPMBL2021b], FE|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)|[@viganoSomaticIL4RMutations2018b]|| |
|
| 76 | +|[IL4R](IL4R)|Tier 1 GE[@dunsCharacterizationDLBCLPMBL2021b], FE[@viganoSomaticIL4RMutations2018b]|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)|[@viganoSomaticIL4RMutations2018b]|| |
|
| 77 | 77 | |[IRF4](IRF4)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 78 | 78 | |[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|| |
| 79 | 79 | |[ITPKB](ITPKB)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@reichelFlowSortingExome2015a]|| |
| ... | ... | @@ -87,7 +87,7 @@ link-citations: true |
| 87 | 87 | |[LCOR](LCOR)|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 88 | 88 | |[LRRN3](LRRN3)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021a]|| |
| 89 | 89 | |[LTB](LTB)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@deschGenotypingCirculatingTumor2020]|| |
| 90 | -|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 90 | +|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@yingMEF2BMutationsLead]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 91 | 91 | |[MEF2C](MEF2C)|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 92 | 92 | |[MGA](MGA)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@jalladesExomeSequencingIdentifies2017]|| |
| 93 | 93 | |[MPEG1](MPEG1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||| |
| ... | ... | @@ -116,22 +116,22 @@ link-citations: true |
| 116 | 116 | |[S1PR2](S1PR2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@muppidiLossSignalingGa132014b]|| |
| 117 | 117 | |[SETD1B](SETD1B)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)||| |
| 118 | 118 | |[SF3B1](SF3B1)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@loveGeneticLandscapeMutations2012]|| |
| 119 | -|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 119 | +|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@hartmannHighlyRecurrentMutations2016b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 120 | 120 | |[SIN3A](SIN3A)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
| 121 | -|[SMARCA4](SMARCA4)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]|| |
|
| 121 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@dengSMARCA4HaploinsufficientCell2024]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]|| |
|
| 122 | 122 | |[SOCS1](SOCS1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@wenigerMutationsTumorSuppressor2006a]|| |
| 123 | 123 | |[SPEN](SPEN)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]|| |
| 124 | 124 | |[STAT3](STAT3)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)||| |
| 125 | -|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a]|| |
|
| 125 | +|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@yildizActivatingSTAT6Mutations2015c]|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a]|| |
|
| 126 | 126 | |[TAF1](TAF1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@spinaGeneticsNodalMarginal2016b]|| |
| 127 | 127 | |[TBL1XR1](TBL1XR1)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@rossiCodingGenomeSplenic2012c]|| |
| 128 | 128 | |[TET2](TET2)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)|[@thomasGeneticSubgroupsInform2023]|| |
| 129 | -|[TMEM30A](TMEM30A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE, CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 129 | +|[TMEM30A](TMEM30A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020b], CE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 130 | 130 | |[TMSB4X](TMSB4X)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 131 | 131 | |[TNFAIP3](TNFAIP3)|Tier 1 GE[@compagnoMutationsMultipleGenes2009a]|[Compagno et al](papers/compagnoMutationsMultipleGenes2009a)|[@rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|| |
| 132 | 132 | |[TNFRSF14](TNFRSF14)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]|| |
| 133 | 133 | |[TOX](TOX)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 134 | -|[TP53](TP53)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a], FE|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 134 | +|[TP53](TP53)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a], FE[@rowhTp53DeletionLineage2011]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 135 | 135 | |[UBE2A](UBE2A)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@reichelFlowSortingExome2015a]|| |
| 136 | 136 | |[WEE1](WEE1)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@reichelFlowSortingExome2015a]|| |
| 137 | 137 | |[XPO1](XPO1)|Tier 1 GE[@mareschalWholeExomeSequencing2016]|[Mareschal et al](papers/mareschalWholeExomeSequencing2016)|[@jardinRecurrentMutationsExportin2016a]|| |
| ... | ... | @@ -209,7 +209,7 @@ link-citations: true |
| 209 | 209 | |[HLA-DMA](HLA-DMA)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)||| |
| 210 | 210 | |[HNF1B](HNF1B)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 211 | 211 | |[HNRNPD](HNRNPD)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 212 | -|[HNRNPH1](HNRNPH1)|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020], FE, CE|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
|
| 212 | +|[HNRNPH1](HNRNPH1)|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020], FE[@pararajalingamCodingNoncodingDrivers2020], CE|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
|
| 213 | 213 | |[ID3](ID3)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]|| |
| 214 | 214 | |[IFNGR1](IFNGR1)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS| |
| 215 | 215 | |[IGLL5](IGLL5)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|| |