(chapuyMolecularSubtypesDiffuse2018b?)
Summary of novel genes
| Entity | Total | Tier 1 | Tier 2 | Tier 2 Pass | Tier 2 Fail | Fail Rate |
|---|---|---|---|---|---|---|
| DLBCL | 19 | 2 | 17 | 10* | 7 | 41% |
Novel genes reported in this study
Tier 1
| New gene | DLBCL tier |
|---|---|
| HIST1H1B | 1 |
| LTB | 1 |
Tier 2
| Novel Gene | DLBCL tier | Average variant quality | QC outcome |
|---|---|---|---|
| GABRA2 | 2 | TBD | TBD |
| COQ7 | 2 | ★ ★ ★ ☆ ☆ | Pass |
| CRIP1 | 2 | ★ ★ ★ ☆ ☆ | Pass |
| DOCK1 | 2 | ★ ★ ★ ☆ ☆ | Pass |
| NAV1 | 2 | TBD | TBD |
| IL6 | 2 | ★ ★ ★ ☆ ☆ | Pass |
| LYN | 2 | ★ ★ ★ ★ ☆ | Pass |
| PRPS1 | 2 | ★ ★ ★ ★ ☆ | Pass |
| TLR2 | 2 | ★ ★ ★ ★ ☆ | Pass |
| ZNF423 | 2 | ★ ★ ★ ☆ ☆ | Pass |
| FUT5 | 2 | ★ ☆ ☆ ☆ ☆ | Fail |
| RAD9A | 2 | No variants reported | Fail |
| CCL4 | 2 | No variants reported | Fail |
| SMEK1 | 2 | No variants in paired samples | Fail |
| NANOG | 2 | No variants reported | Fail |
| NLRP8 | 2 | ★ ★ ☆ ☆ ☆ | Fail |
| PDE4DIP | 2 | ★ ★ ☆ ☆ ☆ | Fail |
Data Availability
| Repository | Accession |
|---|---|
| dbGAP | phs000450.v1.p1 |
| dbGAP | phs000450.v3.p1 |
Details
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