Table of Contents
Overview
Relevance tier by entity
test
Test
| Entity | Tier | Description |
|---|---|---|
| 1 | high-confidence DLBCL gene | |
| 1 | high-confidence FL gene | |
| 2 | relevance in PMBL/cHL/GZL not firmly established | |
| 2 | relevance in BL not firmly established |
Warnings
may not exist
Mutation incidence from meta-analysis
sub headings per file here unless there is just one
DLBCL
Cannot include /templates/tables/DLBCL_BCL2.md - does not exist yet
FL
Cannot include /templates/tables/FL_BCL2.md - does not exist yet
BL
Cannot include /templates/tables/BL_BCL2.md - does not exist yet
Mutation pattern and selective pressure estimates
Cannot include /templates/tables/dnds_BCL2.md - does not exist yet
aSHM regions
section will only exist for certain genes
| chr_name | hg19_start | hg19_end | region | regulatory_comment |
|---|---|---|---|---|
| chr6 | 90981034 | 91016134 | TSS | NA |
Hotspots
section will only exist for certain genes
Browse mutations
Protein
View coding variants in ProteinPaint hg19 or hg38
Genome
View all variants in GenomePaint hg19 or hg38
Expression
History
%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
title Publication timing
1992-01-01 : Tanaka : DLBCL
2011-07-27 : Morin : FL
2021-04-01 : Sarkozy : PMBL
2022-07-06 : Burkhardt : BL
References
1.
Bal
E, Kumar R, Hadigol M, Holmes AB, Hilton LK, Loh JW, Dreval K, Wong JCH,
Vlasevska S, Corinaldesi C, Soni RK, Basso K, Morin RD, Khiabanian H,
Pasqualucci L, Dalla-Favera R. Super-enhancer hypermutation alters
oncogene expression in B cell lymphoma. Nature. 2022
Jul;607(7920):808–815. PMCID: PMC9583699
2.
Burkhardt B, Michgehl U, Rohde J, Erdmann T,
Berning P, Reutter K, Rohde M, Borkhardt A, Burmeister T, Dave S,
Tzankov A, Dugas M, Sandmann S, Fend F, Finger J, Mueller S, Gökbuget N,
Haferlach T, Kern W, Hartmann W, Klapper W, Oschlies I, Richter J,
Kontny U, Lutz M, Maecker-Kolhoff B, Ott G, Rosenwald A, Siebert R, von
Stackelberg A, Strahm B, Woessmann W, Zimmermann M, Zapukhlyak M, Grau
M, Lenz G. Clinical relevance of molecular characteristics in
Burkitt lymphoma differs according to age. Nat Commun. 2022
Jul 6;13(1):3881. PMCID: PMC9259584
3.
Sarkozy C, Hung SS, Chavez EA, Duns G, Takata
K, Chong LC, Aoki T, Jiang A, Miyata-Takata T, Telenius A, Slack GW,
Molina TJ, Ben-Neriah S, Farinha P, Dartigues P, Damotte D, Mottok A,
Salles GA, Casasnovas RO, Savage KJ, Laurent C, Scott DW,
Traverse-Glehen A, Steidl C. Mutational landscape of
gray zone lymphoma. Blood. 2021 Apr 1;137(13):1765–1776.
4.
Tanaka S, Louie DC, Kant JA, Reed JC. Frequent incidence of
somatic mutations in translocated BCL2 oncogenes of
non-Hodgkin’s lymphomas. Blood. 1992 Jan
1;79(1):229–237.


