Entity	Method	Paired samples	Unpaired samples	Cell lines	Example gene	Study
DLBCL	Sanger	0	5	0	BCL2	Tanaka et al. (1992)
BL	Sanger	0	0	9	MYC	Johnston and Carroll (1992)
DLBCL	Sanger	11	28	0	MYC	L. Pasqualucci et al. (2001)
BL	Sanger	0	24	0	TP53	Wilda et al. (2004)
DLBCL	Sanger	134	0	20	PRDM1	Laura Pasqualucci et al. (2006)
DLBCL	Sanger				FAS	Scholl et al. (2007)
DLBCL	Sanger	6	217	21	CARD11	Lenz et al. (2008)
DLBCL	Sanger				NFKBIA	Lake et al. (2009)
DLBCL	Sanger	0	101		TNFAIP3	Compagno et al. (2009)
FL	Sanger	11	251	0	TNFRSF14	Cheung et al. (2010)
DLBCL, FL	RNAseq, WGS	1	31	7	EZH2	Morin et al. (2010)
DLBCL	Sanger	0	382	20	MYD88	Ngo et al. (2011)
DLBCL	RNAseq, WGS	14	103	10	B2M	Morin et al. (2011)
DLBCL	exome	6	92	23	CD36	Laura Pasqualucci, Trifonov, et al. (2011)
DLBCL, FL	exome	7	134	0	CREBBP	Laura Pasqualucci, Dominguez-Sola, et al. (2011)
DLBCL	exome, Sanger				BRAF	Tiacci et al. (2011)
BL	RNAseq, WGS, exome		53		CCND3	Richter et al. (2012)
DLBCL	Sanger				MIR142	Kwanhian et al. (2012)
DLBCL	WGS	40	0	0	CXCR4	Khodabakhshi et al. (2012)
DLBCL	exome	55	0	0	ACTB	Lohr et al. (2012)
BL	exome				ACAD9	Love et al. (2012)
BL	RNAseq				C16orf48	Schmitz et al. (2012)
DLBCL	exome	34	39	21	ARID1A	Zhang et al. (2013)
DLBCL	Sanger	0	0	6	EBF1	Bohle et al. (2013)
DLBCL	WGS	40	0	13	ABI3BP	Morin et al. (2013)
BL	Sanger				ARHGEF1	Muppidi et al. (2014)
BL	RNAseq	0	20	0	CCNF	Abate et al. (2015)
DLBCL	Sanger	24	0	0	STAT6	Yildiz et al. (2015)
DLBCL	Sanger				MAP2K1	Shin et al. (2015)
DLBCL	exome	14	0	0	XPO1	Mareschal et al. (2016)
FL	WGS	5	0	0	ATP6AP1	Okosun et al. (2016)
FL	exome	22	0	0	MAP2K1	Louissaint et al. (2016)
DLBCL	exome	38	0	0	NFKBIE	Morin et al. (2016)
FL	exome	61	69	0	ARID1A	Krysiak et al. (2017)
DLBCL	exome	96	0	0	BTK	Albuquerque et al. (2017)
DLBCL	exome	400	601	0	ANKRD17	Reddy et al. (2017)
DLBCL	exome	137	167	0	CCL4	Chapuy et al. (2018)
DLBCL	WGS	153	0	0	AICDA	Arthur et al. (2018)
DLBCL	exome	48	526	0	CXCR5	Schmitz et al. (2018)
BL	exome	0	74	0	KMT2C	Zhou et al. (2019)
BL	RNAseq, exome	101	0	0	ALPK2	Panea et al. (2019)
BL	WGS	106	0	0	BACH2	Grande et al. (2019)
FL	panel	0	305	0	CTSS	Bararia et al. (2020)
DLBCL	exome, panel	135	0	0	MS4A1	Rushton et al. (2020)
DLBCL	WGS	179	2	0	ACTG1	Hübschmann et al. (2021)
BL	panel	0	298	0	ADAMTS5	Burkhardt et al. (2022)
BL	WGS	193	82	22	CDKN2C	Thomas et al. (2023)
FL	exome, panel	0	370	0	ABL2	Russler-Germain et al. (2023)

Entity	Method	Paired samples	Unpaired samples	Cell lines	Example gene	Study
PMBL	Sanger				GPR126	Weniger et al. (2006)
PMBL	Sanger				STAT6	Ritz et al. (2009)
PMBL	Sanger				TNFAIP3	Schmitz et al. (2009)
MZL	Sanger				BIRC3	Rossi et al. (2011)
MZL	exome				ARID1A	Rossi et al. (2012)
PMBL	Array/Sanger				MAP3K14	Otto et al. (2012)
MZL	Panel				CARD11	Yan et al. (2012)
MZL	Array/Sanger				ATM	Braggio et al. (2012)
MCL	WGS/exome				ABCA3	Beà et al. (2013)
MZL	exome				AMOTL1	Parry et al. (2013)
MCL	exome				ANK2	Zhang et al. (2014)
PMBL	WGS/Sanger				PTPN1	Gunawardana et al. (2014)
PMBL	Sanger				CIITA	Mottok et al. (2015)
PMBL	Sanger				CD58	Schneider et al. (2015)
PMBL	exome				ARIH2	Reichel et al. (2015)
MZL	exome				KLHL6	Ganapathi et al. (2016)
PMBL	Sanger	1	1	(100.0)	XPO1	Jardin et al. (2016)
PMBL	exome/Sanger	1	1	(100.0)	NFKBIE	Mansouri et al. (2016)
MZL	exome/panel	31	8	(25.8)	ABCA13	Spina et al. (2016)
MCL	exome	1	1	(100.0)	CARD11	Wu et al. (2016)
MZL	panel	2	0	(0.0)	CD9B	van den Brand et al. (2017)
MZL	exome	28	2	(7.1)	ARHGAP20	Jallades et al. (2017)
PMBL	exome	10	1	(10.0)	AKAP6	Tiacci et al. (2018)
PMBL	Sanger	1	1	(100.0)	IL4R	Viganò et al. (2018)
PMBL	exome	7	4	(57.1)	ACTB	Wienand et al. (2019)
PMBL	exome	21	6	(28.6)	CISH	Mottok et al. (2019)
MCL	WGS	5	3	(60.0)	BCOR	Nadeu et al. (2020)
MCL	WGS/exome	7	6	(85.7)	B2M	Pararajalingam et al. (2020)
PMBL	panel	10	1	(10.0)	ACTG1	Desch et al. (2020)
PMBL	exome	11	5	(45.5)	ABCA13	Sarkozy et al. (2021)
PMBL	exome	14	6	(42.9)	BIRC3	Duns et al. (2021)
PMBL	exome	7	2	(28.6)	ARID5B	Gomez et al. (2023)

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