| Entity | Method | Paired samples | Unpaired samples | Cell lines | Example gene | Study |
|---|---|---|---|---|---|---|
| DLBCL | Sanger | 0 | 5 | 0 | BCL2 | Tanaka et al. (1992) |
| BL | Sanger | 0 | 0 | 9 | MYC | Johnston and Carroll (1992) |
| DLBCL | Sanger | 11 | 28 | 0 | MYC | L. Pasqualucci et al. (2001) |
| BL | Sanger | 0 | 24 | 0 | TP53 | Wilda et al. (2004) |
| DLBCL | Sanger | 134 | 0 | 20 | PRDM1 | Laura Pasqualucci et al. (2006) |
| PMBL | Sanger | GPR126 | Weniger et al. (2006) | |||
| DLBCL | Sanger | FAS | Scholl et al. (2007) | |||
| DLBCL | Sanger | 6 | 217 | 21 | CARD11 | Lenz et al. (2008) |
| DLBCL | Sanger | NFKBIA | Lake et al. (2009) | |||
| DLBCL | Sanger | 0 | 101 | TNFAIP3 | Compagno et al. (2009) | |
| PMBL | Sanger | STAT6 | Ritz et al. (2009) | |||
| PMBL | Sanger | TNFAIP3 | Schmitz et al. (2009) | |||
| FL | Sanger | 11 | 251 | 0 | TNFRSF14 | Cheung et al. (2010) |
| DLBCL/FL | RNA-seq/WGS | 1 | 31 | 7 | EZH2 | Morin et al. (2010) |
| DLBCL | Sanger | 0 | 382 | 20 | MYD88 | Ngo et al. (2011) |
| DLBCL | RNA-seq/WGS | 14 | 103 | 10 | B2M | Morin et al. (2011) |
| DLBCL | exome | 6 | 92 | 23 | CD36 | Laura Pasqualucci, Trifonov, et al. (2011) |
| DLBCL/FL | exome | 7 | 134 | 0 | CREBBP | Laura Pasqualucci, Dominguez-Sola, et al. (2011) |
| DLBCL | exome/Sanger | 1 | 1 (100.0) | BRAF | Tiacci et al. (2011) | |
| MZL | Sanger | 5 | 4 (80.0) | BIRC3 | Rossi et al. (2011) | |
| MZL | exome | 21 | 10 (47.6) | ARID1A | Rossi et al. (2012) | |
| BL | RNA-seq/WGS/exome | 5 | 5 (100.0) | CCND3 | Richter et al. (2012) | |
| DLBCL | Sanger | 1 | 0 (0.0) | MIR142 | Kwanhian et al. (2012) | |
| DLBCL | WGS | 1 | 1 | (100.0) | CXCR4 | Khodabakhshi et al. (2012) |
| PMBL | Array/Sanger | 2 | 2 | (100.0) | MAP3K14 | Otto et al. (2012) |
| DLBCL | exome | 39 | 18 | (46.2) | ACTB | Lohr et al. (2012) |
| MZL | Panel | 2 | 2 | (100.0) | CARD11 | Yan et al. (2012) |
| BL | exome | 60 | 3 | (5.0) | ACAD9 | Love et al. (2012) |
| BL | RNA-seq | 20 | 4 | (20.0) | C16orf48 | Schmitz et al. (2012) |
| MZL | Array/Sanger | 1 | 1 | (100.0) | ATM | Braggio et al. (2012) |
| MCL | WGS/exome | 27 | 11 | (40.7) | ABCA3 | Beà et al. (2013) |
| DLBCL | exome | 16 | 8 | (50.0) | ARID1A | Zhang et al. (2013) |
| DLBCL | Sanger | 1 | 1 | (100.0) | EBF1 | Bohle et al. (2013) |
| DLBCL | WGS | 38 | 9 | (23.7) | ABI3BP | Morin et al. (2013) |
| MZL | exome | 8 | 0 | (0.0) | AMOTL1 | Parry et al. (2013) |
| MCL | exome | 28 | 2 | (7.1) | ANK2 | Zhang et al. (2014) |
| PMBL | WGS/Sanger | 1 | 1 | (100.0) | PTPN1 | Gunawardana et al. (2014) |
| BL | Sanger | 3 | 1 | (33.3) | ARHGEF1 | Muppidi et al. (2014) |
| BL | RNA-seq | 1 | 0 | (0.0) | CCNF | Abate et al. (2015) |
| DLBCL | Sanger | 1 | 1 | (100.0) | STAT6 | Yildiz et al. (2015) |
| PMBL | Sanger | 1 | 1 | (100.0) | CIITA | Mottok et al. (2015) |
| PMBL | Sanger | 1 | 1 | (100.0) | CD58 | Schneider et al. (2015) |
| PMBL | exome | 29 | 11 | (37.9) | ARIH2 | Reichel et al. (2015) |
| DLBCL | Sanger | 1 | 0 | (0.0) | MAP2K1 | Shin et al. (2015) |
| MZL | exome | 1 | 1 | (100.0) | KLHL6 | Ganapathi et al. (2016) |
| DLBCL | exome | 1 | 1 | (100.0) | XPO1 | Mareschal et al. (2016) |
| FL | WGS | 3 | 3 | (100.0) | ATP6AP1 | Okosun et al. (2016) |
| PMBL | Sanger | 1 | 1 | (100.0) | XPO1 | Jardin et al. (2016) |
| PMBL | exome/Sanger | 1 | 1 | (100.0) | NFKBIE | Mansouri et al. (2016) |
| FL | exome | 1 | 1 | (100.0) | MAP2K1 | Louissaint et al. (2016) |
| MZL | exome/panel | 31 | 8 | (25.8) | ABCA13 | Spina et al. (2016) |
| MCL | exome | 1 | 1 | (100.0) | CARD11 | Wu et al. (2016) |
| DLBCL | exome | 2 | 2 | (100.0) | NFKBIE | Morin et al. (2016) |
| MZL | panel | 2 | 0 | (0.0) | CD9B | van den Brand et al. (2017) |
| MZL | exome | 28 | 2 | (7.1) | ARHGAP20 | Jallades et al. (2017) |
| FL | exome | 22 | 17 | (77.3) | ARID1A | Krysiak et al. (2017) |
| DLBCL | exome | 3 | 3 | (100.0) | BTK | Albuquerque et al. (2017) |
| DLBCL | exome | 59 | 6 | (10.2) | ANKRD17 | Reddy et al. (2017) |
| PMBL | exome | 10 | 1 | (10.0) | AKAP6 | Tiacci et al. (2018) |
| DLBCL | exome | 19 | 2 | (10.5) | CCL4 | Chapuy et al. (2018) |
| PMBL | Sanger | 1 | 1 | (100.0) | IL4R | Viganò et al. (2018) |
| DLBCL | WGS | 19 | 7 | (36.8) | AICDA | Arthur et al. (2018) |
| DLBCL | exome | 16 | 7 | (43.8) | CXCR5 | Schmitz et al. (2018) |
| PMBL | exome | 7 | 4 | (57.1) | ACTB | Wienand et al. (2019) |
| BL | exome | 1 | 0 | (0.0) | KMT2C | Zhou et al. (2019) |
| BL | RNA-seq/exome | 39 | 4 | (10.3) | ALPK2 | Panea et al. (2019) |
| BL | WGS | 13 | 9 | (69.2) | BACH2 | Grande et al. (2019) |
| PMBL | exome | 21 | 6 | (28.6) | CISH | Mottok et al. (2019) |
| MCL | WGS | 5 | 3 | (60.0) | BCOR | Nadeu et al. (2020) |
| FL | panel | 1 | 1 | (100.0) | CTSS | Bararia et al. (2020) |
| DLBCL | exome/panel | 1 | 1 | (100.0) | MS4A1 | Rushton et al. (2020) |
| MCL | WGS/exome | 7 | 6 | (85.7) | B2M | Pararajalingam et al. (2020) |
| PMBL | panel | 10 | 1 | (10.0) | ACTG1 | Desch et al. (2020) |
| DLBCL | WGS | 38 | 3 | (7.9) | ACTG1 | Hübschmann et al. (2021) |
| PMBL | exome | 11 | 5 | (45.5) | ABCA13 | Sarkozy et al. (2021) |
| PMBL | exome | 14 | 6 | (42.9) | BIRC3 | Duns et al. (2021) |
| BL | panel | 25 | 0 | (0.0) | ADAMTS5 | Burkhardt et al. (2022) |
| BL | WGS | 6 | 2 | (33.3) | CDKN2C | Thomas et al. (2023) |
| FL | exome | 20 | 1 | (5.0) | ABL2 | Russler-Germain et al. (2023) |
| PMBL | exome | 7 | 2 | (28.6) | ARID5B | Gomez et al. (2023) |
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